Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_P21
(524 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P13233|CN37_RAT 2',3'-cyclic-nucleotide 3'-phosphodieste... 74 2e-13
sp|P16330|CN37_MOUSE 2',3'-cyclic-nucleotide 3'-phosphodies... 70 2e-12
sp|P09543|CN37_HUMAN 2',3'-cyclic-nucleotide 3'-phosphodies... 70 4e-12
sp|P06623|CN37_BOVIN 2',3'-cyclic-nucleotide 3'-phosphodies... 67 2e-11
sp|P12625|PHB_ALCFA Poly(3-hydroxybutyrate) depolymerase pr... 32 0.93
sp|P97324|G6PD2_MOUSE Glucose-6-phosphate 1-dehydrogenase 2... 30 2.7
sp|Q12230|LSP1_YEAST Sphingolipid long chain base-responsiv... 30 4.6
sp|P05370|G6PD_RAT Glucose-6-phosphate 1-dehydrogenase (G6PD) 29 6.0
sp|P11413|G6PD_HUMAN Glucose-6-phosphate 1-dehydrogenase (G... 29 6.0
sp|O55044|G6PD_CRIGR Glucose-6-phosphate 1-dehydrogenase (G... 29 6.0
>sp|P13233|CN37_RAT 2',3'-cyclic-nucleotide 3'-phosphodiesterase (CNP) (CNPase)
Length = 420
Score = 73.9 bits (180), Expect = 2e-13
Identities = 48/150 (32%), Positives = 73/150 (48%), Gaps = 7/150 (4%)
Frame = +3
Query: 81 IPLYFGWFLNDTDSDNILLFANDTLELMISITEIRLGLAAACELPEFVSKD------DLI 242
+PLYFGWFL S+ + LE E+ A EL F+S D DL+
Sbjct: 185 LPLYFGWFLTKKSSETLRKAGQVFLE------ELGNHKAFKKELRHFISGDEPKEKLDLV 238
Query: 243 DHWRMKTER-LHVTTKFCGYGTVSDAEAYLKSGAVQESLGQLFPIHVKGFLLTPRTFSSH 419
++ + LH TTKFC YG + AE Y + V+ S G+ F + + +TP+T +
Sbjct: 239 SYFGKRPPGVLHCTTKFCDYGKATGAEEYAQQDVVRRSYGKAFKLSISALFVTPKTAGAQ 298
Query: 420 IQLAGPKQIQLWAGDDQEDVSSANKQYGSK 509
+ L +++QLW D + SS + GS+
Sbjct: 299 VVL-NEQELQLWPSDLDKPSSSESLPPGSR 327
>sp|P16330|CN37_MOUSE 2',3'-cyclic-nucleotide 3'-phosphodiesterase (CNP) (CNPase)
Length = 420
Score = 70.5 bits (171), Expect = 2e-12
Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 7/150 (4%)
Frame = +3
Query: 81 IPLYFGWFLNDTDSDNILLFANDTLELMISITEIRLGLAAACELPEFVSKDD------LI 242
+PLYFGWFL S+ + LE E+ A EL F+S D+ L+
Sbjct: 185 LPLYFGWFLTKKSSETLRKAGQVFLE------ELGNHKAFKKELRHFISGDEPKEKLELV 238
Query: 243 DHWRMKTER-LHVTTKFCGYGTVSDAEAYLKSGAVQESLGQLFPIHVKGFLLTPRTFSSH 419
++ + LH TTKFC YG + AE Y + V+ S G+ F + + +TP+T +
Sbjct: 239 SYFGKRPPGVLHCTTKFCDYGKAAGAEEYAQQEVVKRSYGKAFKLSISALFVTPKTAGAQ 298
Query: 420 IQLAGPKQIQLWAGDDQEDVSSANKQYGSK 509
+ L +++QLW D + +S GS+
Sbjct: 299 VVLT-DQELQLWPSDLDKPSASEGLPPGSR 327
>sp|P09543|CN37_HUMAN 2',3'-cyclic-nucleotide 3'-phosphodiesterase (CNP) (CNPase)
Length = 421
Score = 69.7 bits (169), Expect = 4e-12
Identities = 46/150 (30%), Positives = 73/150 (48%), Gaps = 7/150 (4%)
Frame = +3
Query: 81 IPLYFGWFLNDTDSDNILLFANDTLELMISITEIRLGLAAACELPEFVSKD------DLI 242
+PLYFGWFL S+ + LE E+ A EL +FV D DL+
Sbjct: 186 LPLYFGWFLTKKSSETLRKAGQVFLE------ELGNHKAFKKELRQFVPGDEpreKMDLV 239
Query: 243 DHWRMKTER-LHVTTKFCGYGTVSDAEAYLKSGAVQESLGQLFPIHVKGFLLTPRTFSSH 419
++ + LH TTKFC YG AE Y + +++S + F + + +TP+T +
Sbjct: 240 TYFGKRPPGVLHCTTKFCDYGKAPGAEEYAQQDVLKKSYSKAFTLTISALFVTPKTTGAR 299
Query: 420 IQLAGPKQIQLWAGDDQEDVSSANKQYGSK 509
++L+ +Q+QLW D + + N GS+
Sbjct: 300 VELS-EQQLQLWPSDVDKLSPTDNLPRGSR 328
>sp|P06623|CN37_BOVIN 2',3'-cyclic-nucleotide 3'-phosphodiesterase (CNP) (CNPase)
Length = 400
Score = 67.4 bits (163), Expect = 2e-11
Identities = 47/150 (31%), Positives = 72/150 (48%), Gaps = 7/150 (4%)
Frame = +3
Query: 81 IPLYFGWFLNDTDSDNILLFANDTLELMISITEIRLGLAAACELPEFVSKDD------LI 242
+PLYFGWFL S + LE E+ A EL FVS D+ L+
Sbjct: 165 LPLYFGWFLTKKSSAALWKTGQTFLE------ELGNHKAFKKELRHFVSGDEpreKIELV 218
Query: 243 DHWRMKTER-LHVTTKFCGYGTVSDAEAYLKSGAVQESLGQLFPIHVKGFLLTPRTFSSH 419
++ + LH TTKFC YG + AE Y + V++S + F + + +TP+T +
Sbjct: 219 TYFGKRPPGVLHCTTKFCDYGKAAGAEEYAQQDVVKKSYCKAFTLTISALFVTPKTTGAR 278
Query: 420 IQLAGPKQIQLWAGDDQEDVSSANKQYGSK 509
++L+ +Q+ LW D + S N GS+
Sbjct: 279 VELS-EQQLALWPNDVDKLSPSDNLPRGSR 307
>sp|P12625|PHB_ALCFA Poly(3-hydroxybutyrate) depolymerase precursor (PHB depolymerase)
Length = 488
Score = 32.0 bits (71), Expect = 0.93
Identities = 15/52 (28%), Positives = 30/52 (57%)
Frame = -2
Query: 271 NLSVFILQ*SIRSSLETNSGSSQAAANPNRISVILIINSRVSLANNRILSLS 116
N VF++ ++++L SG+ QA + P ++V ++ VSL+ N + + S
Sbjct: 320 NYPVFVMDYWVKNNLRAGSGTGQAGSAPTGLAVTATTSTSVSLSWNAVANAS 371
>sp|P97324|G6PD2_MOUSE Glucose-6-phosphate 1-dehydrogenase 2 (G6PD)
Length = 513
Score = 30.4 bits (67), Expect = 2.7
Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Frame = +3
Query: 12 HEKSTKSEPIWEIEKSINEFEPAIPLYFGWFLNDTDSDNILLFAND--TLELMISITEIR 185
H+K ++E + ++ + + + G F N +S+ L + N ++L + +
Sbjct: 382 HQKCKRNELVIRMQPNEAVYTTMMTKKPGMFFNPEESELDLTYGNKYKNVKLPGAYERLI 441
Query: 186 LGLAAACELPEFVSKDDLIDHWRMKTERLH 275
L + C++ FV D+L + WR+ T LH
Sbjct: 442 LDVFCGCQM-HFVRTDELREGWRIFTPLLH 470
>sp|Q12230|LSP1_YEAST Sphingolipid long chain base-responsive protein LSP1
Length = 341
Score = 29.6 bits (65), Expect = 4.6
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Frame = +3
Query: 279 TTKFCGYGTVSDAEAYLKSGA------VQESLGQLFPIHVKGFLLTPRTFSSHIQLAGPK 440
+TK +G S A ++ K+ A + L QL KG L +S + A K
Sbjct: 27 STKSKFFGKASIASSFRKNAAGNFGPELARKLSQLVKTE-KGVLRAMEVVASERREAA-K 84
Query: 441 QIQLWAGDDQEDVSSANKQYG 503
Q+ LW D+ +DVS + G
Sbjct: 85 QLSLWGADNDDDVSDVTDKLG 105
>sp|P05370|G6PD_RAT Glucose-6-phosphate 1-dehydrogenase (G6PD)
Length = 515
Score = 29.3 bits (64), Expect = 6.0
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Frame = +3
Query: 12 HEKSTKSEPIWEIEKSINEFEPAIPLYFGWFLNDTDSDNILLFANDTLELMISITEIRLG 191
H++ ++E + ++ + + + G F N +S+ L + N + + RL
Sbjct: 382 HQQCKRNELVIRVQPNEAVYTKMMTKKPGMFFNPEESELDLTYGNRYKNVKLPDAYERLI 441
Query: 192 LAAAC-ELPEFVSKDDLIDHWRMKTERLH 275
L C FV D+L + WR+ T LH
Sbjct: 442 LDVFCGSQMHFVRSDELREAWRIFTPLLH 470
>sp|P11413|G6PD_HUMAN Glucose-6-phosphate 1-dehydrogenase (G6PD)
Length = 515
Score = 29.3 bits (64), Expect = 6.0
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Frame = +3
Query: 12 HEKSTKSEPIWEIEKSINEFEPAIPLYFGWFLNDTDSDNILLFANDTLELMISITEIRLG 191
H++ ++E + ++ + + + G F N +S+ L + N + + RL
Sbjct: 382 HQQCKRNELVIRVQPNEAVYTKMMTKKPGMFFNPEESELDLTYGNRYKNVKLPDAYERLI 441
Query: 192 LAAAC-ELPEFVSKDDLIDHWRMKTERLH 275
L C FV D+L + WR+ T LH
Sbjct: 442 LDVFCGSQMHFVRSDELREAWRIFTPLLH 470
>sp|O55044|G6PD_CRIGR Glucose-6-phosphate 1-dehydrogenase (G6PD)
Length = 515
Score = 29.3 bits (64), Expect = 6.0
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Frame = +3
Query: 12 HEKSTKSEPIWEIEKSINEFEPAIPLYFGWFLNDTDSDNILLFANDTLELMISITEIRLG 191
H++ ++E + ++ + + + G F N +S+ L + N + + RL
Sbjct: 382 HQQCKRNELVIRVQPNEAVYTKMMTKKPGMFFNPEESELDLTYGNRYKNVKLPDAYERLI 441
Query: 192 LAAAC-ELPEFVSKDDLIDHWRMKTERLH 275
L C FV D+L + WR+ T LH
Sbjct: 442 LDVFCGSQMHFVRSDELREAWRIFTPLLH 470
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,825,532
Number of Sequences: 369166
Number of extensions: 1212961
Number of successful extensions: 2892
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2888
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3502236525
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)