Planaria EST Database


DrC_01836

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01836
         (601 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7VRI1|NUSB_BLOFL  N utilization substance protein B homo...    32   1.6  
sp|P27625|RPC1_PLAFA  DNA-directed RNA polymerase III larges...    31   2.7  
sp|Q10369|YDBJ_SCHPO  Hypothetical protein C22E12.19 in chro...    30   3.6  
sp|O96935|AMP1_PLAFQ  M1-family aminopeptidase (Pfa-M1)            30   6.1  
sp|Q08832|GBRB3_DROME  Gamma-aminobutyric-acid receptor beta...    30   6.1  
sp|P43056|YLI2_MYCHO  Hypothetical 31.2 kDa protein in licA ...    29   7.9  
>sp|Q7VRI1|NUSB_BLOFL N utilization substance protein B homolog (Protein nusB)
          Length = 138

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -1

Query: 565 MYNWDLSANKYNI*TNNYISVTENEKEHTELKIQIY*NFIHTITEL 428
           +Y W LS N Y + +N  I +   +  +    + +Y   IHTI EL
Sbjct: 17  LYAWQLSKNDYTMISNYVIKIQNIQNFNISYFLTLYIGVIHTIKEL 62
>sp|P27625|RPC1_PLAFA DNA-directed RNA polymerase III largest subunit
          Length = 2339

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 17/70 (24%), Positives = 29/70 (41%)
 Frame = +3

Query: 117  YSRNRALTPPAAHFRTYRNKTNRHTNSLIPNNPSINRVSRQKCDTNNTDIDSNDLKLNNV 296
            Y       P   H     N  N + N    NN   NR      D+N  +I++ND  +N++
Sbjct: 1052 YKNKIPYLPHVQHQNKTSNMNNIYNNMNNINNNDSNRSIIYNNDSNMNNINNNDSNMNSI 1111

Query: 297  QSKSLECDNL 326
             + +   +N+
Sbjct: 1112 HNNNSNMNNI 1121

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
 Frame = +3

Query: 171  NKTNRHTNSLIPNNPSINRVSRQKCDTNNTDIDSNDLKLNNVQS-----KSLECDNLVLE 335
            N  + + NS+  NN ++N +     D+N + I +ND  +N++ +      S+  +N  + 
Sbjct: 1102 NNNDSNMNSIHNNNSNMNNIHNN--DSNRSIIHNNDSNMNSIHNNDSNMNSIHNNNSNMN 1159

Query: 336  NIIDN 350
            NI +N
Sbjct: 1160 NIHNN 1164
>sp|Q10369|YDBJ_SCHPO Hypothetical protein C22E12.19 in chromosome I
          Length = 661

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
 Frame = +3

Query: 138 TPPAAHFRTYRNKTNRHTNSLIPNNPSINRVSRQKCDTNN--TDIDSNDLKLNNVQSKSL 311
           TP  A         +R+T  L+P+ P +  ++ +  DTN   T   +N  KL ++  +S 
Sbjct: 5   TPEVAEHPDVLRNMSRYTLGLLPSEPPVGDMNNEDSDTNTSITQSPTNSEKLTDILQESQ 64

Query: 312 ECDNL---VLENI 341
           +   L    L+NI
Sbjct: 65  DTKALQEKYLQNI 77
>sp|O96935|AMP1_PLAFQ M1-family aminopeptidase (Pfa-M1)
          Length = 1085

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 562 YNWDLSANKYNI*TNNYISVTENEKEHTELKIQI 461
           YN+D    +Y+I  N Y    EN+KE   L I I
Sbjct: 658 YNYDAEKKQYSIHVNQYTKPDENQKEKKPLFIPI 691
>sp|Q08832|GBRB3_DROME Gamma-aminobutyric-acid receptor beta-like subunit precursor
           (GABA(A) receptor)
          Length = 496

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
 Frame = -1

Query: 304 LDCTLLSFKSFESISV-----LFVSHFWRDTRLMLGLFG 203
           +D T+ SF +   +++     ++++ +WRD RL   +FG
Sbjct: 68  MDLTIASFDAISEVNMDYTITMYLNQYWRDERLAFNIFG 106
>sp|P43056|YLI2_MYCHO Hypothetical 31.2 kDa protein in licA 3'region (ORF268)
          Length = 268

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +3

Query: 162 TYRNKTNRHTNSLIPNNPSINRVSRQKCDTNNTDIDSNDL--KLNNVQSKS 308
           TY NK N  TN+ +  N  IN     K   +N  I   DL    N + SKS
Sbjct: 118 TYSNKINIRTNTNLLKNTKINETKVTKITNSNQTIFKLDLIQLWNEINSKS 168
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,615,864
Number of Sequences: 369166
Number of extensions: 1051820
Number of successful extensions: 2642
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2633
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4602033670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)