Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_P07
(601 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7VRI1|NUSB_BLOFL N utilization substance protein B homo... 32 1.6
sp|P27625|RPC1_PLAFA DNA-directed RNA polymerase III larges... 31 2.7
sp|Q10369|YDBJ_SCHPO Hypothetical protein C22E12.19 in chro... 30 3.6
sp|O96935|AMP1_PLAFQ M1-family aminopeptidase (Pfa-M1) 30 6.1
sp|Q08832|GBRB3_DROME Gamma-aminobutyric-acid receptor beta... 30 6.1
sp|P43056|YLI2_MYCHO Hypothetical 31.2 kDa protein in licA ... 29 7.9
>sp|Q7VRI1|NUSB_BLOFL N utilization substance protein B homolog (Protein nusB)
Length = 138
Score = 31.6 bits (70), Expect = 1.6
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -1
Query: 565 MYNWDLSANKYNI*TNNYISVTENEKEHTELKIQIY*NFIHTITEL 428
+Y W LS N Y + +N I + + + + +Y IHTI EL
Sbjct: 17 LYAWQLSKNDYTMISNYVIKIQNIQNFNISYFLTLYIGVIHTIKEL 62
>sp|P27625|RPC1_PLAFA DNA-directed RNA polymerase III largest subunit
Length = 2339
Score = 30.8 bits (68), Expect = 2.7
Identities = 17/70 (24%), Positives = 29/70 (41%)
Frame = +3
Query: 117 YSRNRALTPPAAHFRTYRNKTNRHTNSLIPNNPSINRVSRQKCDTNNTDIDSNDLKLNNV 296
Y P H N N + N NN NR D+N +I++ND +N++
Sbjct: 1052 YKNKIPYLPHVQHQNKTSNMNNIYNNMNNINNNDSNRSIIYNNDSNMNNINNNDSNMNSI 1111
Query: 297 QSKSLECDNL 326
+ + +N+
Sbjct: 1112 HNNNSNMNNI 1121
Score = 29.3 bits (64), Expect = 7.9
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Frame = +3
Query: 171 NKTNRHTNSLIPNNPSINRVSRQKCDTNNTDIDSNDLKLNNVQS-----KSLECDNLVLE 335
N + + NS+ NN ++N + D+N + I +ND +N++ + S+ +N +
Sbjct: 1102 NNNDSNMNSIHNNNSNMNNIHNN--DSNRSIIHNNDSNMNSIHNNDSNMNSIHNNNSNMN 1159
Query: 336 NIIDN 350
NI +N
Sbjct: 1160 NIHNN 1164
>sp|Q10369|YDBJ_SCHPO Hypothetical protein C22E12.19 in chromosome I
Length = 661
Score = 30.4 bits (67), Expect = 3.6
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Frame = +3
Query: 138 TPPAAHFRTYRNKTNRHTNSLIPNNPSINRVSRQKCDTNN--TDIDSNDLKLNNVQSKSL 311
TP A +R+T L+P+ P + ++ + DTN T +N KL ++ +S
Sbjct: 5 TPEVAEHPDVLRNMSRYTLGLLPSEPPVGDMNNEDSDTNTSITQSPTNSEKLTDILQESQ 64
Query: 312 ECDNL---VLENI 341
+ L L+NI
Sbjct: 65 DTKALQEKYLQNI 77
>sp|O96935|AMP1_PLAFQ M1-family aminopeptidase (Pfa-M1)
Length = 1085
Score = 29.6 bits (65), Expect = 6.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 562 YNWDLSANKYNI*TNNYISVTENEKEHTELKIQI 461
YN+D +Y+I N Y EN+KE L I I
Sbjct: 658 YNYDAEKKQYSIHVNQYTKPDENQKEKKPLFIPI 691
>sp|Q08832|GBRB3_DROME Gamma-aminobutyric-acid receptor beta-like subunit precursor
(GABA(A) receptor)
Length = 496
Score = 29.6 bits (65), Expect = 6.1
Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Frame = -1
Query: 304 LDCTLLSFKSFESISV-----LFVSHFWRDTRLMLGLFG 203
+D T+ SF + +++ ++++ +WRD RL +FG
Sbjct: 68 MDLTIASFDAISEVNMDYTITMYLNQYWRDERLAFNIFG 106
>sp|P43056|YLI2_MYCHO Hypothetical 31.2 kDa protein in licA 3'region (ORF268)
Length = 268
Score = 29.3 bits (64), Expect = 7.9
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +3
Query: 162 TYRNKTNRHTNSLIPNNPSINRVSRQKCDTNNTDIDSNDL--KLNNVQSKS 308
TY NK N TN+ + N IN K +N I DL N + SKS
Sbjct: 118 TYSNKINIRTNTNLLKNTKINETKVTKITNSNQTIFKLDLIQLWNEINSKS 168
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,615,864
Number of Sequences: 369166
Number of extensions: 1051820
Number of successful extensions: 2642
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2633
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4602033670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)