Planaria EST Database


DrC_01833

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01833
         (862 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P57784|RU2A_MOUSE  U2 small nuclear ribonucleoprotein A' ...   164   2e-40
sp|Q4R8Y8|RU2A_MACFA  U2 small nuclear ribonucleoprotein A' ...   164   4e-40
sp|P43333|RU2A_ARATH  U2 small nuclear ribonucleoprotein A' ...   147   3e-35
sp|Q9V4Q8|RU2A_DROME  Probable U2 small nuclear ribonucleopr...   137   4e-32
sp|Q9BLB6|RU2A_CAEEL  Probable U2 small nuclear ribonucleopr...   135   1e-31
sp|Q9USX8|RU2A_SCHPO  U2 small nuclear ribonucleoprotein A' ...   116   7e-26
sp|Q08963|RU2A_YEAST  U2 small nuclear ribonucleoprotein A' ...    57   5e-08
sp|Q9D3R3|CEP72_MOUSE  Centrosomal protein of 72 kDa (Cep72 ...    50   1e-05
sp|Q755D2|RU2A_ASHGO  U2 small nuclear ribonucleoprotein A' ...    47   5e-05
sp|Q9P209|CEP72_HUMAN  Centrosomal protein of 72 kDa (Cep72 ...    43   0.001
>sp|P57784|RU2A_MOUSE U2 small nuclear ribonucleoprotein A' (U2 snRNP-A')
          Length = 255

 Score =  164 bits (416), Expect = 2e-40
 Identities = 90/220 (40%), Positives = 130/220 (59%), Gaps = 5/220 (2%)
 Frame = +1

Query: 1   KISLIENLGTTLDQFDALDFTDNEIHRFDGFPFLKRLKSINFTNNKIVKIAKDLNNFIPX 180
           KI +IENLG TLDQFDA+DF+DNEI + DGFP L+RLK++   NN+I +I + L+  +P 
Sbjct: 30  KIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPC 89

Query: 181 XXXXXXXXXXXQELKEIDNLACFKDLEFLALLKNPIATQSNYRLYVIHKLPQVRILDFSR 360
                       EL ++D LA  K L +L++L+NP+  + +YRLYVI+K+PQVR+LDF +
Sbjct: 90  LTELILTNNSLVELGDLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149

Query: 361 VKDKERKQAAYLFAGKAGDSTGKQKTIIVNGKPKPSEIENIPVVHEQMEIDPSK--PVLK 534
           VK KER++A  +F GK G    K                   +       +P    P  K
Sbjct: 150 VKLKERQEAEKMFKGKRGAQLAKD------------------IARRSKTFNPGAGLPTDK 191

Query: 535 K---PTISDMQALKAAIQNATSMEEVDRLNYILNSGKFAG 645
           K   P+  D++A+K AI NA+++ EV+RL  +L SG+  G
Sbjct: 192 KKGGPSAGDVEAIKNAIANASTLAEVERLKGLLQSGQIPG 231
>sp|Q4R8Y8|RU2A_MACFA U2 small nuclear ribonucleoprotein A' (U2 snRNP-A')
 sp|P09661|RU2A_HUMAN U2 small nuclear ribonucleoprotein A' (U2 snRNP-A')
          Length = 255

 Score =  164 bits (414), Expect = 4e-40
 Identities = 90/220 (40%), Positives = 130/220 (59%), Gaps = 5/220 (2%)
 Frame = +1

Query: 1   KISLIENLGTTLDQFDALDFTDNEIHRFDGFPFLKRLKSINFTNNKIVKIAKDLNNFIPX 180
           KI +IENLG TLDQFDA+DF+DNEI + DGFP L+RLK++   NN+I +I + L+  +P 
Sbjct: 30  KIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPC 89

Query: 181 XXXXXXXXXXXQELKEIDNLACFKDLEFLALLKNPIATQSNYRLYVIHKLPQVRILDFSR 360
                       EL ++D LA  K L +L++L+NP+  + +YRLYVI+K+PQVR+LDF +
Sbjct: 90  LTELILTNNSLVELGDLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149

Query: 361 VKDKERKQAAYLFAGKAGDSTGKQKTIIVNGKPKPSEIENIPVVHEQMEIDPSK--PVLK 534
           VK KER++A  +F GK G    K                   +       +P    P  K
Sbjct: 150 VKLKERQEAEKMFKGKRGAQLAKD------------------IARRSKTFNPGAGLPTDK 191

Query: 535 K---PTISDMQALKAAIQNATSMEEVDRLNYILNSGKFAG 645
           K   P+  D++A+K AI NA+++ EV+RL  +L SG+  G
Sbjct: 192 KKGGPSPGDVEAIKNAIANASTLAEVERLKGLLQSGQIPG 231
>sp|P43333|RU2A_ARATH U2 small nuclear ribonucleoprotein A' (U2 snRNP-A')
          Length = 249

 Score =  147 bits (372), Expect = 3e-35
 Identities = 84/212 (39%), Positives = 120/212 (56%)
 Frame = +1

Query: 1   KISLIENLGTTLDQFDALDFTDNEIHRFDGFPFLKRLKSINFTNNKIVKIAKDLNNFIPX 180
           KI +IENLG T DQFD +D +DNEI + + FP+L RL ++   NN+I +I  +L  F+P 
Sbjct: 30  KIPVIENLGATEDQFDTIDLSDNEIVKLENFPYLNRLGTLLINNNRITRINPNLGEFLPK 89

Query: 181 XXXXXXXXXXXQELKEIDNLACFKDLEFLALLKNPIATQSNYRLYVIHKLPQVRILDFSR 360
                        L EID LA    L++L+LL N I  ++NYRLYVIHKL  +R+LDF +
Sbjct: 90  LHSLVLTNNRLVNLVEIDPLASIPKLQYLSLLDNNITKKANYRLYVIHKLKSLRVLDFIK 149

Query: 361 VKDKERKQAAYLFAGKAGDSTGKQKTIIVNGKPKPSEIENIPVVHEQMEIDPSKPVLKKP 540
           +K KER +AA LF+ K  +   K        K    E++ +    E    +P  P +  P
Sbjct: 150 IKAKERAEAASLFSSKEAEEEVK--------KVSREEVKKVSETAE----NPETPKVVAP 197

Query: 541 TISDMQALKAAIQNATSMEEVDRLNYILNSGK 636
           T   + A+KAAI N+ ++EE+ RL   L  G+
Sbjct: 198 TAEQILAIKAAIINSQTIEEIARLEQALKFGQ 229
>sp|Q9V4Q8|RU2A_DROME Probable U2 small nuclear ribonucleoprotein A' (U2 snRNP-A')
          Length = 265

 Score =  137 bits (345), Expect = 4e-32
 Identities = 81/213 (38%), Positives = 121/213 (56%), Gaps = 1/213 (0%)
 Frame = +1

Query: 1   KISLIENLGTTLDQFDALDFTDNEIHRFDGFPFLKRLKSINFTNNKIVKIAKDLNNFIPX 180
           KI  IENLG TLDQFD +D +DN++ + D  P L RLK +   NN+I++I++ L   +P 
Sbjct: 30  KIPQIENLGATLDQFDTIDLSDNDLRKLDNLPHLPRLKCLLLNNNRILRISEGLEEAVPN 89

Query: 181 XXXXXXXXXXXQELKEIDNLACFKDLEFLALLKNPIATQSNYRLYVIHKLPQVRILDFSR 360
                      QEL +++ L  F  LE + LL NP++T+ NYR Y+ +K PQ+R+LDF +
Sbjct: 90  LGSIILTGNNLQELSDLEPLVGFTKLETICLLINPVSTKPNYREYMAYKFPQLRLLDFRK 149

Query: 361 VKDKERKQAAYLFAGKAGDSTGKQKTIIVNGKPKPSEIENIPVVHEQMEIDPSK-PVLKK 537
           +K K+R+ A   F  K G    K+    ++ K K S    I       +   S+   L  
Sbjct: 150 IKQKDRQAAQEFFRTKQGKDVLKE----ISRKSKMSAAAAIAAEAGNGKGRGSEGGRLAN 205

Query: 538 PTISDMQALKAAIQNATSMEEVDRLNYILNSGK 636
           P   DMQ ++ AI+ A+S+ EV+RL+ IL SG+
Sbjct: 206 P--QDMQRIREAIKRASSLAEVERLSQILQSGQ 236
>sp|Q9BLB6|RU2A_CAEEL Probable U2 small nuclear ribonucleoprotein A' (U2 snRNP-A')
          Length = 253

 Score =  135 bits (341), Expect = 1e-31
 Identities = 84/214 (39%), Positives = 119/214 (55%), Gaps = 2/214 (0%)
 Frame = +1

Query: 1   KISLIENLGTTLDQFDALDFTDNEIHRFDGFPFLKRLKSINFTNNKIVKIAKDLNNFIPX 180
           KI +IEN+G T DQFD +D TDN+I + D FP   RL ++   NN+I  IA D+   +P 
Sbjct: 30  KIPVIENMGVTRDQFDVIDLTDNDIRKLDNFPTFSRLNTLYLHNNRINYIAPDIATKLPN 89

Query: 181 XXXXXXXXXXXQELKEIDNLACFKDLEFLALLKNPIATQSNYRLYVIHKLPQVRILDFSR 360
                       EL +I+ LA  K LE++  + NPI  + NYR+Y+I+KLP VR++DF+R
Sbjct: 90  LKTLALTNNNICELGDIEPLAECKKLEYVTFIGNPITHKDNYRMYMIYKLPTVRVIDFNR 149

Query: 361 VKDKERKQAAYLFAGKAGDST--GKQKTIIVNGKPKPSEIENIPVVHEQMEIDPSKPVLK 534
           V+  ER+ A  +F GK+G       QK++       PSEIE           + S     
Sbjct: 150 VRLTEREAAKKMFKGKSGKKARDAIQKSVHTE---DPSEIE---------PNENSSGGGA 197

Query: 535 KPTISDMQALKAAIQNATSMEEVDRLNYILNSGK 636
           + T  D + +K AI+NA S+ EV+ L  IL SGK
Sbjct: 198 RLTDEDREKIKEAIKNAKSLSEVNYLQSILASGK 231
>sp|Q9USX8|RU2A_SCHPO U2 small nuclear ribonucleoprotein A' (U2 snRNP-A')
          Length = 239

 Score =  116 bits (291), Expect = 7e-26
 Identities = 72/214 (33%), Positives = 120/214 (56%), Gaps = 2/214 (0%)
 Frame = +1

Query: 1   KISLIENLGTTLDQFDALDFTDNEIHRFDGFPFLKRLKSINFTNNKIVKIAKDLNNFIPX 180
           +I +IENLG   D  DA+DFTDN+I     FP +KRL+++   NN+I  IA D+   +P 
Sbjct: 29  QIPIIENLGVLRDVHDAIDFTDNDIRYLGNFPRMKRLQTLLCGNNRITAIAPDIGKVLPN 88

Query: 181 XXXXXXXXXXXQELKEIDNLACFKDLEFLALLKNPIATQSNYRLYVIHKLPQVRILDFSR 360
                      QE+ ++D LA    L  L+ + NP+A +  YRLY+I ++P + ILDF R
Sbjct: 89  LKTLSLAQNHLQEIADLDPLASCPQLTNLSCIDNPVAQKQYYRLYLIWRIPSLHILDFER 148

Query: 361 VKDKERKQAAYLFAGKAGDSTGKQKTIIVNGKPKPSEIENIPVVHEQMEIDPSKPVLKKP 540
           V+  ER +A  +F G+  + T +  + I+  K +  ++  +   H     + + P+    
Sbjct: 149 VRRNERLRAEEVF-GQIQNPT-EIASSIMGVKSRVFDLAALVQSHP----EANSPITTGY 202

Query: 541 TIS--DMQALKAAIQNATSMEEVDRLNYILNSGK 636
           T++  + + +K AI+NA+S+ E++RL  +L  GK
Sbjct: 203 TLTPEEREKIKEAIKNASSIAEINRLEAMLLEGK 236
>sp|Q08963|RU2A_YEAST U2 small nuclear ribonucleoprotein A' (U2 snRNP-A') (Looks
           exceptionally like U2A protein 1)
          Length = 238

 Score = 57.4 bits (137), Expect = 5e-08
 Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
 Frame = +1

Query: 250 KDLEFLALLKNPIATQSNYRLYVIHKLPQVRILDFSRVKDKERKQAAYLFAGKAGDSTGK 429
           + L+ L L+ N +   +NYR +V+  +P +  LDF  V  +ERK A        GD+ G 
Sbjct: 122 RTLKNLTLIGNQVCHLANYREHVLRLVPHLETLDFQNVTAEERKSAMSFPRQADGDTLGP 181

Query: 430 QKTIIVN--GKPKPSEIENIPVVHEQMEIDPSKPVLKKPTISDMQALKAAIQNATSMEEV 603
             T I +   + K  EI N+              V+ K T+     LK  +  ATS+EE+
Sbjct: 182 VNTAIRDNGSRDKTMEIMNL--------------VVSKMTVERRNELKKQLAEATSLEEI 227

Query: 604 DRLNYILNSG 633
            RL  +L+ G
Sbjct: 228 ARLEKLLSGG 237
>sp|Q9D3R3|CEP72_MOUSE Centrosomal protein of 72 kDa (Cep72 protein)
          Length = 646

 Score = 49.7 bits (117), Expect = 1e-05
 Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 2/155 (1%)
 Frame = +1

Query: 1   KISLIENLGTTLDQFDALDFTDNEIHRFDGFPFLKRLKSINFTNNKIVKIAKDLNNFIPX 180
           KI+ + N    L    +LD + N +   +G  +L  L+S+N   N I  +A         
Sbjct: 41  KITHLGNSLMHLTALKSLDLSRNSLVSLEGIQYLVSLESLNLYYNCISSLA--------- 91

Query: 181 XXXXXXXXXXXQELKEIDNLACFKDLEFLALLKNPIA-TQSNYRLYVIHKLPQVRILDFS 357
                       E+  +  L   +D++F     NP+   +S+YRL+V+H LP++R LD  
Sbjct: 92  ------------EVFRLHTLLELQDVDFRL---NPVVKNESDYRLFVVHMLPKLRQLDDR 136

Query: 358 RVKDKERKQAAYLFAGKAG-DSTGKQKTIIVNGKP 459
            V++ ERK +   FA +   +S     T +  G+P
Sbjct: 137 PVRESERKASQLHFAPEDSLNSKENFSTTLTVGRP 171
>sp|Q755D2|RU2A_ASHGO U2 small nuclear ribonucleoprotein A' (U2 snRNP-A')
          Length = 237

 Score = 47.4 bits (111), Expect = 5e-05
 Identities = 43/200 (21%), Positives = 87/200 (43%), Gaps = 1/200 (0%)
 Frame = +1

Query: 37  DQFDALDFTDNEIHRFDGFPFLKRLKSINFTNNKIVKI-AKDLNNFIPXXXXXXXXXXXX 213
           ++ + +DFT+NE+           + ++  + N++ ++ A  L  ++             
Sbjct: 52  ERTNIVDFTNNELEELPPLGHNDTVHTLLLSRNRLGRLDASRLPRYLVNLNLAMNRFEKF 111

Query: 214 QELKEIDNLACFKDLEFLALLKNPIATQSNYRLYVIHKLPQVRILDFSRVKDKERKQAAY 393
           ++L+ + +    K L+ L L  N I  +  YR  VI   PQ+ +LD  RV+  ER+ A  
Sbjct: 112 EQLQGLRSAP--KTLKNLNLRGNVICHKEQYRETVIALCPQLAVLDGERVRQAERQAAPQ 169

Query: 394 LFAGKAGDSTGKQKTIIVNGKPKPSEIENIPVVHEQMEIDPSKPVLKKPTISDMQALKAA 573
                       +KT      P+P  ++       + E+     V+ K     ++ +K  
Sbjct: 170 -----------NEKTDTPTEGPQPVALQ----ATSEKELQLMDHVVNKMDKDTLEDIKQQ 214

Query: 574 IQNATSMEEVDRLNYILNSG 633
           +  AT++ E++RL  +L+ G
Sbjct: 215 LAKATTLAEIERLEKLLSGG 234
>sp|Q9P209|CEP72_HUMAN Centrosomal protein of 72 kDa (Cep72 protein)
          Length = 647

 Score = 43.1 bits (100), Expect = 0.001
 Identities = 38/155 (24%), Positives = 66/155 (42%), Gaps = 2/155 (1%)
 Frame = +1

Query: 1   KISLIENLGTTLDQFDALDFTDNEIHRFDGFPFLKRLKSINFTNNKIVKIAKDLNNFIPX 180
           KI+ + +   +L    +LD + N +   +G  +L  L+S+N   N I  +A         
Sbjct: 42  KITHLGHSLMSLTGLKSLDLSRNSLVSLEGIQYLTALESLNLYYNCISSLA--------- 92

Query: 181 XXXXXXXXXXXQELKEIDNLACFKDLEFLALLKNPIA-TQSNYRLYVIHKLPQVRILDFS 357
                          E+  L    +L  +    NP+   + +YRL+V+H LP+++ LD  
Sbjct: 93  ---------------EVFRLHALTELVDVDFRLNPVVKVEPDYRLFVVHLLPKLQQLDDR 137

Query: 358 RVKDKERKQAAYLFAGKAG-DSTGKQKTIIVNGKP 459
            V+  ERK +   FA +   DS       +  G+P
Sbjct: 138 PVRASERKASRLHFASEDSLDSKESVPASLKEGRP 172
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,821,168
Number of Sequences: 369166
Number of extensions: 1783583
Number of successful extensions: 5441
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5438
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8534739105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)