Planaria EST Database


DrC_01832

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01832
         (361 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8XK02|THIG_CLOPE  Thiazole biosynthesis protein thiG           30   2.2  
sp|Q26710|AOX_TRYBB  Alternative oxidase, mitochondrial prec...    28   4.9  
sp|O87873|DCH_THAAR  Cyclohexa-1,5-dienecarbonyl-CoA hydrata...    28   4.9  
sp|P27425|TRFE_HORSE  Serotransferrin precursor (Transferrin...    28   6.4  
sp|O94617|UAP1_SCHPO  Probable UDP-N-acetylglucosamine pyrop...    28   6.4  
sp|O88345|PDK4_SPETR  [Pyruvate dehydrogenase [lipoamide]] k...    28   6.4  
>sp|Q8XK02|THIG_CLOPE Thiazole biosynthesis protein thiG
          Length = 254

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = -3

Query: 299 KSSKVLAVGGFVYLSYKCGVWSDNYSSRTSFNTLRHSIMSKSCDIIPNRANEIKEV 132
           K++KVLA  GF+ L Y C    D Y+ R        ++M     I  NR  + KE+
Sbjct: 115 KATKVLADEGFIVLPYMC---PDIYAGRRLIEAGAAAVMPLGAPIGSNRGLKTKEL 167
>sp|Q26710|AOX_TRYBB Alternative oxidase, mitochondrial precursor
          Length = 329

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 149 NEIKEVAKAYWNGGVNSTFDYII 81
           N++ EVA+ YWN   N+TF  +I
Sbjct: 237 NDVPEVARVYWNLSKNATFRDLI 259
>sp|O87873|DCH_THAAR Cyclohexa-1,5-dienecarbonyl-CoA hydratase
           (Cyclohexa-1,5-diene-1-carboxyl-CoA hydratase)
           (Dienoyl-CoA hydratase)
          Length = 258

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -3

Query: 239 WSDNYSSRTSFNTLRHSIMSKSCDIIPNRANEIKEVAKAY 120
           W D + +R S ++LR ++ +  CD +P    ++  V   Y
Sbjct: 191 WFDEHIARLSASSLRFAVRAARCDSVPRIKQKLDTVEALY 230
>sp|P27425|TRFE_HORSE Serotransferrin precursor (Transferrin) (Siderophilin)
           (Beta-1-metal binding globulin)
          Length = 706

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
 Frame = -3

Query: 302 GKSSKVLAVGGFVYLSYKCG---VWSDNYSSRT 213
           G++  +   GGF+Y++ KCG   V ++NY +R+
Sbjct: 405 GEADAMSLDGGFIYIAGKCGLVPVLAENYETRS 437
>sp|O94617|UAP1_SCHPO Probable UDP-N-acetylglucosamine pyrophosphorylase
          Length = 475

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -3

Query: 218 RTSFNTLRHSIMSKSCDIIPNRANEIKEVAKAYW--NGGVNSTFDYIIRSPEFAQQG 54
           RTSF+ L++S  S + D      N+I  + K++   NGG+ S  D    SPE + QG
Sbjct: 403 RTSFSPLKNSSKSPN-DNHETCVNDILSLGKSWILKNGGILSPSDCTYVSPECSLQG 458
>sp|O88345|PDK4_SPETR [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4,
           mitochondrial precursor (Pyruvate dehydrogenase kinase
           isoform 4)
          Length = 412

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
 Frame = -3

Query: 236 SDNYSSRTSFNTLRHSI------MSKSCDIIPNRANEIKEV--AKAYWNGGVNSTFDYII 81
           SDN   RTSF+ LR  +      + K  D++P+R      V   K+++   +    ++  
Sbjct: 45  SDNACERTSFSFLRQELPVRLANILKEIDVLPDRLTNTSSVQLVKSWYIQSLMELVEFHE 104

Query: 80  RSPE 69
           +SPE
Sbjct: 105 KSPE 108
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,970,021
Number of Sequences: 369166
Number of extensions: 593959
Number of successful extensions: 1345
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1345
length of database: 68,354,980
effective HSP length: 87
effective length of database: 52,283,035
effective search space used: 1673057120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)