Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_N23
(361 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8XK02|THIG_CLOPE Thiazole biosynthesis protein thiG 30 2.2
sp|Q26710|AOX_TRYBB Alternative oxidase, mitochondrial prec... 28 4.9
sp|O87873|DCH_THAAR Cyclohexa-1,5-dienecarbonyl-CoA hydrata... 28 4.9
sp|P27425|TRFE_HORSE Serotransferrin precursor (Transferrin... 28 6.4
sp|O94617|UAP1_SCHPO Probable UDP-N-acetylglucosamine pyrop... 28 6.4
sp|O88345|PDK4_SPETR [Pyruvate dehydrogenase [lipoamide]] k... 28 6.4
>sp|Q8XK02|THIG_CLOPE Thiazole biosynthesis protein thiG
Length = 254
Score = 29.6 bits (65), Expect = 2.2
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -3
Query: 299 KSSKVLAVGGFVYLSYKCGVWSDNYSSRTSFNTLRHSIMSKSCDIIPNRANEIKEV 132
K++KVLA GF+ L Y C D Y+ R ++M I NR + KE+
Sbjct: 115 KATKVLADEGFIVLPYMC---PDIYAGRRLIEAGAAAVMPLGAPIGSNRGLKTKEL 167
>sp|Q26710|AOX_TRYBB Alternative oxidase, mitochondrial precursor
Length = 329
Score = 28.5 bits (62), Expect = 4.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 149 NEIKEVAKAYWNGGVNSTFDYII 81
N++ EVA+ YWN N+TF +I
Sbjct: 237 NDVPEVARVYWNLSKNATFRDLI 259
>sp|O87873|DCH_THAAR Cyclohexa-1,5-dienecarbonyl-CoA hydratase
(Cyclohexa-1,5-diene-1-carboxyl-CoA hydratase)
(Dienoyl-CoA hydratase)
Length = 258
Score = 28.5 bits (62), Expect = 4.9
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -3
Query: 239 WSDNYSSRTSFNTLRHSIMSKSCDIIPNRANEIKEVAKAY 120
W D + +R S ++LR ++ + CD +P ++ V Y
Sbjct: 191 WFDEHIARLSASSLRFAVRAARCDSVPRIKQKLDTVEALY 230
>sp|P27425|TRFE_HORSE Serotransferrin precursor (Transferrin) (Siderophilin)
(Beta-1-metal binding globulin)
Length = 706
Score = 28.1 bits (61), Expect = 6.4
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Frame = -3
Query: 302 GKSSKVLAVGGFVYLSYKCG---VWSDNYSSRT 213
G++ + GGF+Y++ KCG V ++NY +R+
Sbjct: 405 GEADAMSLDGGFIYIAGKCGLVPVLAENYETRS 437
>sp|O94617|UAP1_SCHPO Probable UDP-N-acetylglucosamine pyrophosphorylase
Length = 475
Score = 28.1 bits (61), Expect = 6.4
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = -3
Query: 218 RTSFNTLRHSIMSKSCDIIPNRANEIKEVAKAYW--NGGVNSTFDYIIRSPEFAQQG 54
RTSF+ L++S S + D N+I + K++ NGG+ S D SPE + QG
Sbjct: 403 RTSFSPLKNSSKSPN-DNHETCVNDILSLGKSWILKNGGILSPSDCTYVSPECSLQG 458
>sp|O88345|PDK4_SPETR [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4,
mitochondrial precursor (Pyruvate dehydrogenase kinase
isoform 4)
Length = 412
Score = 28.1 bits (61), Expect = 6.4
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Frame = -3
Query: 236 SDNYSSRTSFNTLRHSI------MSKSCDIIPNRANEIKEV--AKAYWNGGVNSTFDYII 81
SDN RTSF+ LR + + K D++P+R V K+++ + ++
Sbjct: 45 SDNACERTSFSFLRQELPVRLANILKEIDVLPDRLTNTSSVQLVKSWYIQSLMELVEFHE 104
Query: 80 RSPE 69
+SPE
Sbjct: 105 KSPE 108
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,970,021
Number of Sequences: 369166
Number of extensions: 593959
Number of successful extensions: 1345
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1345
length of database: 68,354,980
effective HSP length: 87
effective length of database: 52,283,035
effective search space used: 1673057120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)