Planaria EST Database


DrC_01830

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01830
         (216 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q20318|LIN49_CAEEL  Protein lin-49 (Abnormal cell lineage...    28   5.0  
sp|Q04235|YMA5_YEAST  Hypothetical 52.7 kDa protein in PDR4-...    28   8.5  
>sp|Q20318|LIN49_CAEEL Protein lin-49 (Abnormal cell lineage protein 49)
          Length = 1042

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
 Frame = +2

Query: 119 TTTGLFKEYGVERYLHILIYI----THYMSVILMIN 214
           +TTG FK+   +R++H+L  I    TH+ + I M N
Sbjct: 257 STTGAFKQVDQKRWVHVLCVIWVDETHFGNTIFMEN 292
>sp|Q04235|YMA5_YEAST Hypothetical 52.7 kDa protein in PDR4-GLO1 intergenic region
          Length = 462

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 159 YLSTPYSLNNPVVVFKSTIKKSFNIEIWK 73
           +L   Y++  PVV+F ++  +SFN  IW+
Sbjct: 115 HLPLKYTIYPPVVLFNNSTVRSFNHPIWQ 143
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,813,296
Number of Sequences: 369166
Number of extensions: 368270
Number of successful extensions: 1089
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 68,354,980
effective HSP length: 43
effective length of database: 60,411,375
effective search space used: 1691518500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)