Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_N20
(216 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q20318|LIN49_CAEEL Protein lin-49 (Abnormal cell lineage... 28 5.0
sp|Q04235|YMA5_YEAST Hypothetical 52.7 kDa protein in PDR4-... 28 8.5
>sp|Q20318|LIN49_CAEEL Protein lin-49 (Abnormal cell lineage protein 49)
Length = 1042
Score = 28.5 bits (62), Expect = 5.0
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Frame = +2
Query: 119 TTTGLFKEYGVERYLHILIYI----THYMSVILMIN 214
+TTG FK+ +R++H+L I TH+ + I M N
Sbjct: 257 STTGAFKQVDQKRWVHVLCVIWVDETHFGNTIFMEN 292
>sp|Q04235|YMA5_YEAST Hypothetical 52.7 kDa protein in PDR4-GLO1 intergenic region
Length = 462
Score = 27.7 bits (60), Expect = 8.5
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -1
Query: 159 YLSTPYSLNNPVVVFKSTIKKSFNIEIWK 73
+L Y++ PVV+F ++ +SFN IW+
Sbjct: 115 HLPLKYTIYPPVVLFNNSTVRSFNHPIWQ 143
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,813,296
Number of Sequences: 369166
Number of extensions: 368270
Number of successful extensions: 1089
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 68,354,980
effective HSP length: 43
effective length of database: 60,411,375
effective search space used: 1691518500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)