Planaria EST Database


DrC_01828

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01828
         (784 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q37372|NU5M_ACACA  NADH-ubiquinone oxidoreductase chain 5...    34   0.52 
sp|P34852|NU4M_ANOGA  NADH-ubiquinone oxidoreductase chain 4...    33   0.67 
sp|Q9TKZ2|CEMA_NEPOL  Chloroplast envelope membrane protein        32   1.5  
sp|Q66K08|CILP1_MOUSE  Cartilage intermediate layer protein ...    31   4.4  
sp|O19112|CILP1_PIG  Cartilage intermediate layer protein 1 ...    31   4.4  
sp|Q8HEC1|NU2M_CAEBR  NADH-ubiquinone oxidoreductase chain 2...    31   4.4  
sp|Q8YAS7|OTCC_LISMO  Ornithine carbamoyltransferase, catabo...    30   7.4  
sp|Q725C8|OTCC_LISMF  Ornithine carbamoyltransferase, catabo...    30   7.4  
sp|P33511|NU4M_ANOQU  NADH-ubiquinone oxidoreductase chain 4...    30   7.4  
sp|Q89AT8|NUOJ_BUCBP  NADH-quinone oxidoreductase chain J (N...    30   7.4  
>sp|Q37372|NU5M_ACACA NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
           5)
          Length = 675

 Score = 33.9 bits (76), Expect = 0.52
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
 Frame = -3

Query: 368 IVTYSPI*YQSFQIINKFKF-FIYL*NIKFYFSLFSSLHSPNFLLMINF----CKYSIYF 204
           ++  S I + SFQ    + + F+ L  + F+  L SSL  P+F    NF    C  S+  
Sbjct: 605 LINKSSIIFSSFQTGFLYNYIFVVLLGLMFFIKLTSSLFFPSFNSFFNFGLFICLLSLII 664

Query: 203 FLNFSYKLNKI 171
           FL+F  K   I
Sbjct: 665 FLSFGNKKQNI 675
>sp|P34852|NU4M_ANOGA NADH-ubiquinone oxidoreductase chain 4 (NADH dehydrogenase subunit
           4)
          Length = 447

 Score = 33.5 bits (75), Expect = 0.67
 Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
 Frame = -3

Query: 311 FFIYL*NIKFYFSLFSSLHSPN---FLLMINFCKYSIYFFLNFSYKLNKIFFPFLVKLFR 141
           F+  L ++     +F  L+S N   F L++N      Y F NF+     + F FLVK+  
Sbjct: 145 FYTLLASLPLLIGIFYILNSKNTLSFTLLLN------YSFSNFNLLYLSLVFAFLVKM-P 197

Query: 140 VY*LDLWTPETLFHYIIATNQIV-GIYIQLRGF*LFIFW*INQV 12
           ++ + LW P+      ++ + I+ GI ++L G+ L   + + Q+
Sbjct: 198 MFLVHLWLPKAHVEAPVSGSMILAGILLKLGGYGLLRMFSLLQI 241
>sp|Q9TKZ2|CEMA_NEPOL Chloroplast envelope membrane protein
          Length = 392

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = -1

Query: 724 FPNRRKIIPV*FMFLKTLNFYLDSTFFIYIFGFLN*INTNTFFYLH 587
           FP  +K I   FMF+ T    LD+ F  +IF +LN I+ +T    H
Sbjct: 346 FPESKKFI---FMFVATFPVLLDTVFKYWIFRYLNHISPSTVAVYH 388
>sp|Q66K08|CILP1_MOUSE Cartilage intermediate layer protein 1 precursor (CILP-1) [Contains:
            Cartilage intermediate layer protein 1 C1; Cartilage
            intermediate layer protein 1 C2]
          Length = 1184

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -1

Query: 391  GKCQFAQLSSLIHQFNINHFKLLINSNFS 305
            G C  A ++S++H++ +NH  L +N++ S
Sbjct: 1031 GSCHRASVNSMLHEYLVNHLPLAVNNDTS 1059
>sp|O19112|CILP1_PIG Cartilage intermediate layer protein 1 (CILP-1) [Contains:
           Cartilage intermediate layer protein 1 C2]
          Length = 599

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -1

Query: 391 GKCQFAQLSSLIHQFNINHFKLLINSNFS 305
           G C  A ++S++H++ +NH  L +N++ S
Sbjct: 447 GSCHRASVNSMLHEYLVNHLPLAVNNDTS 475
>sp|Q8HEC1|NU2M_CAEBR NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
           2)
          Length = 282

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 8/117 (6%)
 Frame = -3

Query: 344 YQSFQIINKFKFFIYL*NIKFYFSLFSSLHS--PNFLLMI----NFCKYSIYFFLNFSYK 183
           Y++  II+  + F ++  +  +FS+F++L+     FLLMI     F K S Y F+N+   
Sbjct: 145 YKNLLIISSTESFNWI-VLGLFFSMFNTLYLFVYYFLLMILLISKFSKSSSYNFVNWETA 203

Query: 182 LNKIFFPFLVKLF-RVY*L-DLWTPETLFHYIIATNQIVGIYIQLRGF*LFIFW*IN 18
           L  +  PF V  F +++ L +++  ++ F  ++  +  + +         F FW IN
Sbjct: 204 LVFLNIPFSVSFFVKIFSLSEIFKFDSFFTLLLLFSMFLSVL-------AFSFWLIN 253
>sp|Q8YAS7|OTCC_LISMO Ornithine carbamoyltransferase, catabolic (OTCase)
          Length = 341

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = -2

Query: 450 IAKQKKHQQIIDILNSAAYPVSANLLNYRH 361
           +A+ ++HQ ++++ N+AA PV   + +Y H
Sbjct: 103 MARVERHQTVVELANTAAIPVINGMSDYNH 132
>sp|Q725C8|OTCC_LISMF Ornithine carbamoyltransferase, catabolic (OTCase)
          Length = 341

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = -2

Query: 450 IAKQKKHQQIIDILNSAAYPVSANLLNYRH 361
           +A+ ++HQ ++++ N+AA PV   + +Y H
Sbjct: 103 MARVERHQTVVELANTAAIPVINGMSDYNH 132
>sp|P33511|NU4M_ANOQU NADH-ubiquinone oxidoreductase chain 4 (NADH dehydrogenase subunit
           4)
          Length = 448

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
 Frame = -3

Query: 311 FFIYL*NIKFYFSLFSSLHSPNFLLMINFCKYSIYFFLNFSYKLNKIFFPFLVKLFRVY* 132
           F+  L ++     +F  L   NF+  ++F     Y F + +     + F FLVK+  ++ 
Sbjct: 145 FYTLLASLPLLIGIFYIL---NFMDTLSFTLLLNYMFTDMNLLYLSLIFAFLVKM-PMFL 200

Query: 131 LDLWTPETLFHYIIATNQIV-GIYIQLRGF*LFIFW*INQV 12
           + LW P+      ++ + I+ GI ++L G+ L   + + QV
Sbjct: 201 VHLWLPKAHVEAPVSGSMILAGILLKLGGYGLLRMFSLLQV 241
>sp|Q89AT8|NUOJ_BUCBP NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J)
           (NDH-1, chain J)
          Length = 164

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 10/67 (14%)
 Frame = -3

Query: 245 FLLMINFCKYSIY----------FFLNFSYKLNKIFFPFLVKLFRVY*LDLWTPETLFHY 96
           F++M NF K ++Y          +++NF + L  + FPF   L  +Y       E +F+ 
Sbjct: 70  FIMMFNFKKSTLYAEKIFDKNNYYYINFLFLLCILIFPFFFILSYLY------KEKIFYM 123

Query: 95  IIATNQI 75
           +++T  +
Sbjct: 124 VVSTKLV 130
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,254,553
Number of Sequences: 369166
Number of extensions: 1408347
Number of successful extensions: 3371
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3371
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7357347200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)