Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_N11
(784 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q37372|NU5M_ACACA NADH-ubiquinone oxidoreductase chain 5... 34 0.52
sp|P34852|NU4M_ANOGA NADH-ubiquinone oxidoreductase chain 4... 33 0.67
sp|Q9TKZ2|CEMA_NEPOL Chloroplast envelope membrane protein 32 1.5
sp|Q66K08|CILP1_MOUSE Cartilage intermediate layer protein ... 31 4.4
sp|O19112|CILP1_PIG Cartilage intermediate layer protein 1 ... 31 4.4
sp|Q8HEC1|NU2M_CAEBR NADH-ubiquinone oxidoreductase chain 2... 31 4.4
sp|Q8YAS7|OTCC_LISMO Ornithine carbamoyltransferase, catabo... 30 7.4
sp|Q725C8|OTCC_LISMF Ornithine carbamoyltransferase, catabo... 30 7.4
sp|P33511|NU4M_ANOQU NADH-ubiquinone oxidoreductase chain 4... 30 7.4
sp|Q89AT8|NUOJ_BUCBP NADH-quinone oxidoreductase chain J (N... 30 7.4
>sp|Q37372|NU5M_ACACA NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
5)
Length = 675
Score = 33.9 bits (76), Expect = 0.52
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Frame = -3
Query: 368 IVTYSPI*YQSFQIINKFKF-FIYL*NIKFYFSLFSSLHSPNFLLMINF----CKYSIYF 204
++ S I + SFQ + + F+ L + F+ L SSL P+F NF C S+
Sbjct: 605 LINKSSIIFSSFQTGFLYNYIFVVLLGLMFFIKLTSSLFFPSFNSFFNFGLFICLLSLII 664
Query: 203 FLNFSYKLNKI 171
FL+F K I
Sbjct: 665 FLSFGNKKQNI 675
>sp|P34852|NU4M_ANOGA NADH-ubiquinone oxidoreductase chain 4 (NADH dehydrogenase subunit
4)
Length = 447
Score = 33.5 bits (75), Expect = 0.67
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Frame = -3
Query: 311 FFIYL*NIKFYFSLFSSLHSPN---FLLMINFCKYSIYFFLNFSYKLNKIFFPFLVKLFR 141
F+ L ++ +F L+S N F L++N Y F NF+ + F FLVK+
Sbjct: 145 FYTLLASLPLLIGIFYILNSKNTLSFTLLLN------YSFSNFNLLYLSLVFAFLVKM-P 197
Query: 140 VY*LDLWTPETLFHYIIATNQIV-GIYIQLRGF*LFIFW*INQV 12
++ + LW P+ ++ + I+ GI ++L G+ L + + Q+
Sbjct: 198 MFLVHLWLPKAHVEAPVSGSMILAGILLKLGGYGLLRMFSLLQI 241
>sp|Q9TKZ2|CEMA_NEPOL Chloroplast envelope membrane protein
Length = 392
Score = 32.3 bits (72), Expect = 1.5
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = -1
Query: 724 FPNRRKIIPV*FMFLKTLNFYLDSTFFIYIFGFLN*INTNTFFYLH 587
FP +K I FMF+ T LD+ F +IF +LN I+ +T H
Sbjct: 346 FPESKKFI---FMFVATFPVLLDTVFKYWIFRYLNHISPSTVAVYH 388
>sp|Q66K08|CILP1_MOUSE Cartilage intermediate layer protein 1 precursor (CILP-1) [Contains:
Cartilage intermediate layer protein 1 C1; Cartilage
intermediate layer protein 1 C2]
Length = 1184
Score = 30.8 bits (68), Expect = 4.4
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -1
Query: 391 GKCQFAQLSSLIHQFNINHFKLLINSNFS 305
G C A ++S++H++ +NH L +N++ S
Sbjct: 1031 GSCHRASVNSMLHEYLVNHLPLAVNNDTS 1059
>sp|O19112|CILP1_PIG Cartilage intermediate layer protein 1 (CILP-1) [Contains:
Cartilage intermediate layer protein 1 C2]
Length = 599
Score = 30.8 bits (68), Expect = 4.4
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -1
Query: 391 GKCQFAQLSSLIHQFNINHFKLLINSNFS 305
G C A ++S++H++ +NH L +N++ S
Sbjct: 447 GSCHRASVNSMLHEYLVNHLPLAVNNDTS 475
>sp|Q8HEC1|NU2M_CAEBR NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
2)
Length = 282
Score = 30.8 bits (68), Expect = 4.4
Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 8/117 (6%)
Frame = -3
Query: 344 YQSFQIINKFKFFIYL*NIKFYFSLFSSLHS--PNFLLMI----NFCKYSIYFFLNFSYK 183
Y++ II+ + F ++ + +FS+F++L+ FLLMI F K S Y F+N+
Sbjct: 145 YKNLLIISSTESFNWI-VLGLFFSMFNTLYLFVYYFLLMILLISKFSKSSSYNFVNWETA 203
Query: 182 LNKIFFPFLVKLF-RVY*L-DLWTPETLFHYIIATNQIVGIYIQLRGF*LFIFW*IN 18
L + PF V F +++ L +++ ++ F ++ + + + F FW IN
Sbjct: 204 LVFLNIPFSVSFFVKIFSLSEIFKFDSFFTLLLLFSMFLSVL-------AFSFWLIN 253
>sp|Q8YAS7|OTCC_LISMO Ornithine carbamoyltransferase, catabolic (OTCase)
Length = 341
Score = 30.0 bits (66), Expect = 7.4
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = -2
Query: 450 IAKQKKHQQIIDILNSAAYPVSANLLNYRH 361
+A+ ++HQ ++++ N+AA PV + +Y H
Sbjct: 103 MARVERHQTVVELANTAAIPVINGMSDYNH 132
>sp|Q725C8|OTCC_LISMF Ornithine carbamoyltransferase, catabolic (OTCase)
Length = 341
Score = 30.0 bits (66), Expect = 7.4
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = -2
Query: 450 IAKQKKHQQIIDILNSAAYPVSANLLNYRH 361
+A+ ++HQ ++++ N+AA PV + +Y H
Sbjct: 103 MARVERHQTVVELANTAAIPVINGMSDYNH 132
>sp|P33511|NU4M_ANOQU NADH-ubiquinone oxidoreductase chain 4 (NADH dehydrogenase subunit
4)
Length = 448
Score = 30.0 bits (66), Expect = 7.4
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Frame = -3
Query: 311 FFIYL*NIKFYFSLFSSLHSPNFLLMINFCKYSIYFFLNFSYKLNKIFFPFLVKLFRVY* 132
F+ L ++ +F L NF+ ++F Y F + + + F FLVK+ ++
Sbjct: 145 FYTLLASLPLLIGIFYIL---NFMDTLSFTLLLNYMFTDMNLLYLSLIFAFLVKM-PMFL 200
Query: 131 LDLWTPETLFHYIIATNQIV-GIYIQLRGF*LFIFW*INQV 12
+ LW P+ ++ + I+ GI ++L G+ L + + QV
Sbjct: 201 VHLWLPKAHVEAPVSGSMILAGILLKLGGYGLLRMFSLLQV 241
>sp|Q89AT8|NUOJ_BUCBP NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J)
(NDH-1, chain J)
Length = 164
Score = 30.0 bits (66), Expect = 7.4
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 10/67 (14%)
Frame = -3
Query: 245 FLLMINFCKYSIY----------FFLNFSYKLNKIFFPFLVKLFRVY*LDLWTPETLFHY 96
F++M NF K ++Y +++NF + L + FPF L +Y E +F+
Sbjct: 70 FIMMFNFKKSTLYAEKIFDKNNYYYINFLFLLCILIFPFFFILSYLY------KEKIFYM 123
Query: 95 IIATNQI 75
+++T +
Sbjct: 124 VVSTKLV 130
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,254,553
Number of Sequences: 369166
Number of extensions: 1408347
Number of successful extensions: 3371
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3371
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7357347200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)