Planaria EST Database


DrC_01826

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01826
         (690 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O00233|PSD9_HUMAN  26S proteasome non-ATPase regulatory s...    95   2e-19
sp|Q9CR00|PSD9_MOUSE  26S proteasome non-ATPase regulatory s...    93   8e-19
sp|Q9WTV5|PSD9_RAT  26S proteasome non-ATPase regulatory sub...    91   3e-18
sp|Q10920|PSD9_CAEEL  Probable 26S proteasome non-ATPase reg...    72   2e-12
sp|P40555|PSD9_YEAST  Probable 26S proteasome regulatory sub...    48   3e-05
sp|Q8YQ64|Y3971_ANASP  Hypothetical zinc metalloprotease All...    40   0.004
sp|Q9A710|MMPA_CAUCR  Metalloprotease mmpA (membrane metallo...    37   0.064
sp|Q98MC1|Y638_RHILO  Hypothetical zinc metalloprotease mll0638    35   0.14 
sp|Q00702|UL20_PRVN3  UL20 membrane protein homolog                34   0.32 
sp|O61967|LAP1_CAEEL  Lap1 protein (Lethal protein 413)            34   0.42 
>sp|O00233|PSD9_HUMAN 26S proteasome non-ATPase regulatory subunit 9 (26S proteasome
           regulatory subunit p27)
          Length = 223

 Score = 95.1 bits (235), Expect = 2e-19
 Identities = 55/178 (30%), Positives = 93/178 (52%), Gaps = 3/178 (1%)
 Frame = +3

Query: 105 QGVGVTRPLTDLEGFPLNNVDLFAIREARFRHNCLQNDLTAVMLEIESKLHEIHSLNVGL 284
           +G+G+  PL D EG+P ++VDL+ +R AR    CLQND  AVM ++E  LH++H+ +   
Sbjct: 48  KGIGMNEPLVDCEGYPRSDVDLYQVRTARHNIICLQNDHKAVMKQVEEALHQLHARD--- 104

Query: 285 ESSRAIDNAGENLSPEGRNDGSAAFIARHPPFARVDRVDASSVAFSCGLREGDELLQIDH 464
           +  +A D A  +     R  G +        FA+V+ +   S A   GL+  DE+++   
Sbjct: 105 KEKQARDMAEAHKEAMSRKLGQSESQGPPRAFAKVNSISPGSPASIAGLQVDDEIVEFGS 164

Query: 465 ITKETFSGLQAVMELFRSRANKTVLVCVKRGNKRVHLTIVP---PSQGPIGCLLVPLQ 629
           +  + F  L  +  + +    K + V V R  ++  L +VP     +G +GC ++PLQ
Sbjct: 165 VNTQNFQSLHNIGSVVQHSEGKPLNVTVIRRGEKHQLRLVPTRWAGKGLLGCNIIPLQ 222
>sp|Q9CR00|PSD9_MOUSE 26S proteasome non-ATPase regulatory subunit 9 (26S proteasome
           regulatory subunit p27)
          Length = 222

 Score = 92.8 bits (229), Expect = 8e-19
 Identities = 57/183 (31%), Positives = 96/183 (52%), Gaps = 8/183 (4%)
 Frame = +3

Query: 105 QGVGVTRPLTDLEGFPLNNVDLFAIREARFRHNCLQNDLTAVMLEIESKLHEIHSLNVGL 284
           +G+G+  PL D EG+P  +VDL+ +R AR    CLQND  A+M ++E  LH++H+ +   
Sbjct: 48  KGIGMNEPLVDCEGYPRADVDLYQVRTARHNIICLQNDHKALMKQVEEALHQLHARD--- 104

Query: 285 ESSRAIDNAGENLSPEGRNDGSAAFIARHPP-----FARVDRVDASSVAFSCGLREGDEL 449
           +  +A D A      E R +     +A + P     FARV+ +   S A   GL+  DE+
Sbjct: 105 KEKQARDMA------EAREEAMNRRLASNSPVLPQAFARVNSISPGSPASIAGLQVDDEI 158

Query: 450 LQIDHITKETFSGLQAVMELFRSRANKTVLVCVKRGNKRVHLTIVP---PSQGPIGCLLV 620
           ++   +  + F  +Q V  + +    K + V V R  ++  L ++P     +G +GC ++
Sbjct: 159 VEFGSVNTQNFQSVQNVGTVVQHSEGKPLNVTVIRRGEKHQLRLIPTRWAGKGLLGCNII 218

Query: 621 PLQ 629
           PLQ
Sbjct: 219 PLQ 221
>sp|Q9WTV5|PSD9_RAT 26S proteasome non-ATPase regulatory subunit 9 (26S proteasome
           regulatory subunit p27) (Transactivating protein
           Bridge-1)
          Length = 222

 Score = 90.9 bits (224), Expect = 3e-18
 Identities = 55/178 (30%), Positives = 92/178 (51%), Gaps = 3/178 (1%)
 Frame = +3

Query: 105 QGVGVTRPLTDLEGFPLNNVDLFAIREARFRHNCLQNDLTAVMLEIESKLHEIHSLNVGL 284
           +G+G+  PL D EG+P  +VDL+ +R AR    CLQND  A+M ++E  LH++H+ +   
Sbjct: 48  KGIGMNEPLVDCEGYPRADVDLYQVRTARHNIICLQNDHKALMKQVEEALHQLHARDKEK 107

Query: 285 ESSRAIDNAGENLSPEGRNDGSAAFIARHPPFARVDRVDASSVAFSCGLREGDELLQIDH 464
           ++    +   E ++    +D  A   A    FARV+ +   S A   GL+  DE+++   
Sbjct: 108 QARDMAEAREEAMNRRLASDSPALPKA----FARVNSISPGSPASIAGLQVDDEIVEFGS 163

Query: 465 ITKETFSGLQAVMELFRSRANKTVLVCVKRGNKRVHLTIVP---PSQGPIGCLLVPLQ 629
           +  + F  LQ V  + +    K + V V R  ++  L + P     +G +GC + PLQ
Sbjct: 164 VNTQNFQSLQNVGTVVQHSEGKPLNVMVIRRGEKHQLRLTPTRWAGKGLLGCNITPLQ 221
>sp|Q10920|PSD9_CAEEL Probable 26S proteasome non-ATPase regulatory subunit 9
          Length = 197

 Score = 71.6 bits (174), Expect = 2e-12
 Identities = 49/174 (28%), Positives = 81/174 (46%), Gaps = 7/174 (4%)
 Frame = +3

Query: 126 PLTDLEGFPLNNVDLFAIREARFRHNCLQNDLTA----VMLEIESKLHEIHSLNVGLESS 293
           PL D EG+PLN +D++A+R AR    CL+ND  A    +++E+E++  E+       E  
Sbjct: 38  PLLDAEGYPLNTIDVYAVRHARHDLICLRNDRAALTEKIVVEMENENKEVSGQTATSEEK 97

Query: 294 RAIDNAGENLSPEGRNDGSAAFIARHPPFARVDRVDASSVAFSCGLREGDELLQIDHITK 473
                + E                   PF ++  V   S A   G R+ D ++Q  ++  
Sbjct: 98  PVHRTSNE-------------------PFVKISSVVELSPADIGGFRKDDLIIQYGNLHH 138

Query: 474 ETFSGLQAVMELFRSRANKTVLVCVKRGNKRVHLTIVP---PSQGPIGCLLVPL 626
             F+ +Q V ++ +   +K + V V R N+ V L I P      G +GC +VP+
Sbjct: 139 GNFNDMQEVAQITKQSEDKIIRVTVIRENRPVRLEICPKKWSGPGLLGCNIVPI 192
>sp|P40555|PSD9_YEAST Probable 26S proteasome regulatory subunit p27 (Proteasome
           non-ATPase subunit 2)
          Length = 220

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 38/180 (21%), Positives = 80/180 (44%), Gaps = 4/180 (2%)
 Frame = +3

Query: 99  DSQGVGVTRPLTDLEGFPLNNVDLFAIREARFRHNCLQNDLTAVMLEIESKLHEIHSLNV 278
           + QG+G+   L   +G+P ++VD+  +   R   N L+NDL  ++      L++ H  N+
Sbjct: 53  EQQGIGMDSALVTPDGYPRSDVDVLQVTMIRKNVNMLKNDLNHLLQRSHVLLNQ-HFDNM 111

Query: 279 GLESSRAIDNAGENLSPEGRNDGSAAFIARHPPFARVDRVDASSVAFSCGLREGDELLQI 458
            ++S++           + R +     I    PFA +  V   S +    ++  D+L+ I
Sbjct: 112 NVKSNQ-----------DARRNNDDQAIQYTIPFAFISEVVPGSPSDKADIKVDDKLISI 160

Query: 459 DHITKETFSGLQAVMELFRSRANKTVLVCVKRGNKRVHLTIVPP----SQGPIGCLLVPL 626
            ++     S LQ +  +     ++ + V + R  + +  ++ P      +G +GC +  L
Sbjct: 161 GNVHAANHSKLQNIQMVVMKNEDRPLPVLLLREGQILKTSLTPSRNWNGRGLLGCRIQEL 220
>sp|Q8YQ64|Y3971_ANASP Hypothetical zinc metalloprotease All3971
          Length = 364

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 6/81 (7%)
 Frame = +3

Query: 399 DASSVAFSCGLREGDELLQIDHITKETFSGLQ---AVMELFRSRANKTVLVCVKRGNKRV 569
           + S+VA + GL+ GD +L  +   KE  + LQ   A+ ++ ++   K++ + V RG++R+
Sbjct: 135 EVSAVATNAGLKPGDVILSANQ--KEFGTSLQEIEALRDIIKNSPGKSIQLTVARGDERL 192

Query: 570 HLTIVP---PSQGPIGCLLVP 623
            + ++P   P+ G IG  L P
Sbjct: 193 SVNVIPEAKPAGGSIGIGLAP 213
>sp|Q9A710|MMPA_CAUCR Metalloprotease mmpA (membrane metalloprotease A)
          Length = 398

 Score = 36.6 bits (83), Expect = 0.064
 Identities = 22/67 (32%), Positives = 34/67 (50%)
 Frame = +3

Query: 387 VDRVDASSVAFSCGLREGDELLQIDHITKETFSGLQAVMELFRSRANKTVLVCVKRGNKR 566
           V  V A + A + G + GD +L+ D+    +F  +Q  + L   RAN  +   V+R  + 
Sbjct: 150 VGEVVAGTPAAAAGFKPGDVILKADNRQIRSFQDIQGYVAL---RANMPIDFAVERDGRT 206

Query: 567 VHLTIVP 587
           VHLT  P
Sbjct: 207 VHLTATP 213
>sp|Q98MC1|Y638_RHILO Hypothetical zinc metalloprotease mll0638
          Length = 367

 Score = 35.4 bits (80), Expect = 0.14
 Identities = 22/67 (32%), Positives = 30/67 (44%)
 Frame = +3

Query: 387 VDRVDASSVAFSCGLREGDELLQIDHITKETFSGLQAVMELFRSRANKTVLVCVKRGNKR 566
           V  V A S A   G++ GD  + +D    ETF  +Q    L   RA  T+   + R  K 
Sbjct: 141 VAEVTADSPAAKAGIQPGDRFVSVDGSKVETFGDVQ---RLVSGRAGDTITFVMLRDGKE 197

Query: 567 VHLTIVP 587
           V +T  P
Sbjct: 198 VTVTATP 204
>sp|Q00702|UL20_PRVN3 UL20 membrane protein homolog
          Length = 161

 Score = 34.3 bits (77), Expect = 0.32
 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 2/113 (1%)
 Frame = +3

Query: 282 LESSRAIDNAGENLSPEGRNDG--SAAFIARHPPFARVDRVDASSVAFSCGLREGDELLQ 455
           +E + A  +A  +    G ND   S+AF+   PP  R      S +A +  LR    L+ 
Sbjct: 1   MEDAAADVDAAADAKLTGENDALLSSAFVGARPPRPRFSSHVVSLLALALALRPACCLVL 60

Query: 456 IDHITKETFSGLQAVMELFRSRANKTVLVCVKRGNKRVHLTIVPPSQGPIGCL 614
             H ++ T + L   +  +   A   VLV   R   R  + + P  Q  +G L
Sbjct: 61  ALHGSRATLAALLTALAFYARAAVCAVLVA--RNVARDRMPLSPAQQAALGLL 111
>sp|O61967|LAP1_CAEEL Lap1 protein (Lethal protein 413)
          Length = 699

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 24/71 (33%), Positives = 34/71 (47%)
 Frame = +3

Query: 387 VDRVDASSVAFSCGLREGDELLQIDHITKETFSGLQAVMELFRSRANKTVLVCVKRGNKR 566
           V +V   S A+ CGLREGD+L++ + +     S   A ME  + R     LV ++R    
Sbjct: 603 VTKVTPGSAAYRCGLREGDKLIRANDVNMINASQDNA-MEAIKKR-ETVELVVLRRSPSP 660

Query: 567 VHLTIVPPSQG 599
           V  T  P   G
Sbjct: 661 VSRTSEPSLNG 671
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,105,054
Number of Sequences: 369166
Number of extensions: 1571551
Number of successful extensions: 4204
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4200
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5927776870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)