Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_N07
(690 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O00233|PSD9_HUMAN 26S proteasome non-ATPase regulatory s... 95 2e-19
sp|Q9CR00|PSD9_MOUSE 26S proteasome non-ATPase regulatory s... 93 8e-19
sp|Q9WTV5|PSD9_RAT 26S proteasome non-ATPase regulatory sub... 91 3e-18
sp|Q10920|PSD9_CAEEL Probable 26S proteasome non-ATPase reg... 72 2e-12
sp|P40555|PSD9_YEAST Probable 26S proteasome regulatory sub... 48 3e-05
sp|Q8YQ64|Y3971_ANASP Hypothetical zinc metalloprotease All... 40 0.004
sp|Q9A710|MMPA_CAUCR Metalloprotease mmpA (membrane metallo... 37 0.064
sp|Q98MC1|Y638_RHILO Hypothetical zinc metalloprotease mll0638 35 0.14
sp|Q00702|UL20_PRVN3 UL20 membrane protein homolog 34 0.32
sp|O61967|LAP1_CAEEL Lap1 protein (Lethal protein 413) 34 0.42
>sp|O00233|PSD9_HUMAN 26S proteasome non-ATPase regulatory subunit 9 (26S proteasome
regulatory subunit p27)
Length = 223
Score = 95.1 bits (235), Expect = 2e-19
Identities = 55/178 (30%), Positives = 93/178 (52%), Gaps = 3/178 (1%)
Frame = +3
Query: 105 QGVGVTRPLTDLEGFPLNNVDLFAIREARFRHNCLQNDLTAVMLEIESKLHEIHSLNVGL 284
+G+G+ PL D EG+P ++VDL+ +R AR CLQND AVM ++E LH++H+ +
Sbjct: 48 KGIGMNEPLVDCEGYPRSDVDLYQVRTARHNIICLQNDHKAVMKQVEEALHQLHARD--- 104
Query: 285 ESSRAIDNAGENLSPEGRNDGSAAFIARHPPFARVDRVDASSVAFSCGLREGDELLQIDH 464
+ +A D A + R G + FA+V+ + S A GL+ DE+++
Sbjct: 105 KEKQARDMAEAHKEAMSRKLGQSESQGPPRAFAKVNSISPGSPASIAGLQVDDEIVEFGS 164
Query: 465 ITKETFSGLQAVMELFRSRANKTVLVCVKRGNKRVHLTIVP---PSQGPIGCLLVPLQ 629
+ + F L + + + K + V V R ++ L +VP +G +GC ++PLQ
Sbjct: 165 VNTQNFQSLHNIGSVVQHSEGKPLNVTVIRRGEKHQLRLVPTRWAGKGLLGCNIIPLQ 222
>sp|Q9CR00|PSD9_MOUSE 26S proteasome non-ATPase regulatory subunit 9 (26S proteasome
regulatory subunit p27)
Length = 222
Score = 92.8 bits (229), Expect = 8e-19
Identities = 57/183 (31%), Positives = 96/183 (52%), Gaps = 8/183 (4%)
Frame = +3
Query: 105 QGVGVTRPLTDLEGFPLNNVDLFAIREARFRHNCLQNDLTAVMLEIESKLHEIHSLNVGL 284
+G+G+ PL D EG+P +VDL+ +R AR CLQND A+M ++E LH++H+ +
Sbjct: 48 KGIGMNEPLVDCEGYPRADVDLYQVRTARHNIICLQNDHKALMKQVEEALHQLHARD--- 104
Query: 285 ESSRAIDNAGENLSPEGRNDGSAAFIARHPP-----FARVDRVDASSVAFSCGLREGDEL 449
+ +A D A E R + +A + P FARV+ + S A GL+ DE+
Sbjct: 105 KEKQARDMA------EAREEAMNRRLASNSPVLPQAFARVNSISPGSPASIAGLQVDDEI 158
Query: 450 LQIDHITKETFSGLQAVMELFRSRANKTVLVCVKRGNKRVHLTIVP---PSQGPIGCLLV 620
++ + + F +Q V + + K + V V R ++ L ++P +G +GC ++
Sbjct: 159 VEFGSVNTQNFQSVQNVGTVVQHSEGKPLNVTVIRRGEKHQLRLIPTRWAGKGLLGCNII 218
Query: 621 PLQ 629
PLQ
Sbjct: 219 PLQ 221
>sp|Q9WTV5|PSD9_RAT 26S proteasome non-ATPase regulatory subunit 9 (26S proteasome
regulatory subunit p27) (Transactivating protein
Bridge-1)
Length = 222
Score = 90.9 bits (224), Expect = 3e-18
Identities = 55/178 (30%), Positives = 92/178 (51%), Gaps = 3/178 (1%)
Frame = +3
Query: 105 QGVGVTRPLTDLEGFPLNNVDLFAIREARFRHNCLQNDLTAVMLEIESKLHEIHSLNVGL 284
+G+G+ PL D EG+P +VDL+ +R AR CLQND A+M ++E LH++H+ +
Sbjct: 48 KGIGMNEPLVDCEGYPRADVDLYQVRTARHNIICLQNDHKALMKQVEEALHQLHARDKEK 107
Query: 285 ESSRAIDNAGENLSPEGRNDGSAAFIARHPPFARVDRVDASSVAFSCGLREGDELLQIDH 464
++ + E ++ +D A A FARV+ + S A GL+ DE+++
Sbjct: 108 QARDMAEAREEAMNRRLASDSPALPKA----FARVNSISPGSPASIAGLQVDDEIVEFGS 163
Query: 465 ITKETFSGLQAVMELFRSRANKTVLVCVKRGNKRVHLTIVP---PSQGPIGCLLVPLQ 629
+ + F LQ V + + K + V V R ++ L + P +G +GC + PLQ
Sbjct: 164 VNTQNFQSLQNVGTVVQHSEGKPLNVMVIRRGEKHQLRLTPTRWAGKGLLGCNITPLQ 221
>sp|Q10920|PSD9_CAEEL Probable 26S proteasome non-ATPase regulatory subunit 9
Length = 197
Score = 71.6 bits (174), Expect = 2e-12
Identities = 49/174 (28%), Positives = 81/174 (46%), Gaps = 7/174 (4%)
Frame = +3
Query: 126 PLTDLEGFPLNNVDLFAIREARFRHNCLQNDLTA----VMLEIESKLHEIHSLNVGLESS 293
PL D EG+PLN +D++A+R AR CL+ND A +++E+E++ E+ E
Sbjct: 38 PLLDAEGYPLNTIDVYAVRHARHDLICLRNDRAALTEKIVVEMENENKEVSGQTATSEEK 97
Query: 294 RAIDNAGENLSPEGRNDGSAAFIARHPPFARVDRVDASSVAFSCGLREGDELLQIDHITK 473
+ E PF ++ V S A G R+ D ++Q ++
Sbjct: 98 PVHRTSNE-------------------PFVKISSVVELSPADIGGFRKDDLIIQYGNLHH 138
Query: 474 ETFSGLQAVMELFRSRANKTVLVCVKRGNKRVHLTIVP---PSQGPIGCLLVPL 626
F+ +Q V ++ + +K + V V R N+ V L I P G +GC +VP+
Sbjct: 139 GNFNDMQEVAQITKQSEDKIIRVTVIRENRPVRLEICPKKWSGPGLLGCNIVPI 192
>sp|P40555|PSD9_YEAST Probable 26S proteasome regulatory subunit p27 (Proteasome
non-ATPase subunit 2)
Length = 220
Score = 47.8 bits (112), Expect = 3e-05
Identities = 38/180 (21%), Positives = 80/180 (44%), Gaps = 4/180 (2%)
Frame = +3
Query: 99 DSQGVGVTRPLTDLEGFPLNNVDLFAIREARFRHNCLQNDLTAVMLEIESKLHEIHSLNV 278
+ QG+G+ L +G+P ++VD+ + R N L+NDL ++ L++ H N+
Sbjct: 53 EQQGIGMDSALVTPDGYPRSDVDVLQVTMIRKNVNMLKNDLNHLLQRSHVLLNQ-HFDNM 111
Query: 279 GLESSRAIDNAGENLSPEGRNDGSAAFIARHPPFARVDRVDASSVAFSCGLREGDELLQI 458
++S++ + R + I PFA + V S + ++ D+L+ I
Sbjct: 112 NVKSNQ-----------DARRNNDDQAIQYTIPFAFISEVVPGSPSDKADIKVDDKLISI 160
Query: 459 DHITKETFSGLQAVMELFRSRANKTVLVCVKRGNKRVHLTIVPP----SQGPIGCLLVPL 626
++ S LQ + + ++ + V + R + + ++ P +G +GC + L
Sbjct: 161 GNVHAANHSKLQNIQMVVMKNEDRPLPVLLLREGQILKTSLTPSRNWNGRGLLGCRIQEL 220
>sp|Q8YQ64|Y3971_ANASP Hypothetical zinc metalloprotease All3971
Length = 364
Score = 40.4 bits (93), Expect = 0.004
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 6/81 (7%)
Frame = +3
Query: 399 DASSVAFSCGLREGDELLQIDHITKETFSGLQ---AVMELFRSRANKTVLVCVKRGNKRV 569
+ S+VA + GL+ GD +L + KE + LQ A+ ++ ++ K++ + V RG++R+
Sbjct: 135 EVSAVATNAGLKPGDVILSANQ--KEFGTSLQEIEALRDIIKNSPGKSIQLTVARGDERL 192
Query: 570 HLTIVP---PSQGPIGCLLVP 623
+ ++P P+ G IG L P
Sbjct: 193 SVNVIPEAKPAGGSIGIGLAP 213
>sp|Q9A710|MMPA_CAUCR Metalloprotease mmpA (membrane metalloprotease A)
Length = 398
Score = 36.6 bits (83), Expect = 0.064
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = +3
Query: 387 VDRVDASSVAFSCGLREGDELLQIDHITKETFSGLQAVMELFRSRANKTVLVCVKRGNKR 566
V V A + A + G + GD +L+ D+ +F +Q + L RAN + V+R +
Sbjct: 150 VGEVVAGTPAAAAGFKPGDVILKADNRQIRSFQDIQGYVAL---RANMPIDFAVERDGRT 206
Query: 567 VHLTIVP 587
VHLT P
Sbjct: 207 VHLTATP 213
>sp|Q98MC1|Y638_RHILO Hypothetical zinc metalloprotease mll0638
Length = 367
Score = 35.4 bits (80), Expect = 0.14
Identities = 22/67 (32%), Positives = 30/67 (44%)
Frame = +3
Query: 387 VDRVDASSVAFSCGLREGDELLQIDHITKETFSGLQAVMELFRSRANKTVLVCVKRGNKR 566
V V A S A G++ GD + +D ETF +Q L RA T+ + R K
Sbjct: 141 VAEVTADSPAAKAGIQPGDRFVSVDGSKVETFGDVQ---RLVSGRAGDTITFVMLRDGKE 197
Query: 567 VHLTIVP 587
V +T P
Sbjct: 198 VTVTATP 204
>sp|Q00702|UL20_PRVN3 UL20 membrane protein homolog
Length = 161
Score = 34.3 bits (77), Expect = 0.32
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 2/113 (1%)
Frame = +3
Query: 282 LESSRAIDNAGENLSPEGRNDG--SAAFIARHPPFARVDRVDASSVAFSCGLREGDELLQ 455
+E + A +A + G ND S+AF+ PP R S +A + LR L+
Sbjct: 1 MEDAAADVDAAADAKLTGENDALLSSAFVGARPPRPRFSSHVVSLLALALALRPACCLVL 60
Query: 456 IDHITKETFSGLQAVMELFRSRANKTVLVCVKRGNKRVHLTIVPPSQGPIGCL 614
H ++ T + L + + A VLV R R + + P Q +G L
Sbjct: 61 ALHGSRATLAALLTALAFYARAAVCAVLVA--RNVARDRMPLSPAQQAALGLL 111
>sp|O61967|LAP1_CAEEL Lap1 protein (Lethal protein 413)
Length = 699
Score = 33.9 bits (76), Expect = 0.42
Identities = 24/71 (33%), Positives = 34/71 (47%)
Frame = +3
Query: 387 VDRVDASSVAFSCGLREGDELLQIDHITKETFSGLQAVMELFRSRANKTVLVCVKRGNKR 566
V +V S A+ CGLREGD+L++ + + S A ME + R LV ++R
Sbjct: 603 VTKVTPGSAAYRCGLREGDKLIRANDVNMINASQDNA-MEAIKKR-ETVELVVLRRSPSP 660
Query: 567 VHLTIVPPSQG 599
V T P G
Sbjct: 661 VSRTSEPSLNG 671
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,105,054
Number of Sequences: 369166
Number of extensions: 1571551
Number of successful extensions: 4204
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4200
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5927776870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)