Planaria EST Database


DrC_01822

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01822
         (268 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9BGZ0|VP13A_MACFA  Vacuolar protein sorting 13A (Chorein...    55   5e-08
sp|Q96RL7|VP13A_HUMAN  Vacuolar protein sorting 13A (Chorein...    52   3e-07
sp|P87319|YOS1_SCHPO  Hypothetical protein C21C3.01c in chro...    30   2.3  
>sp|Q9BGZ0|VP13A_MACFA Vacuolar protein sorting 13A (Chorein) (Chorea-acanthocytosis
           protein homolog)
          Length = 619

 Score = 55.1 bits (131), Expect = 5e-08
 Identities = 30/89 (33%), Positives = 41/89 (46%)
 Frame = +1

Query: 1   YQRKRREQLAKRPENLGVGLAQGGKGLIXXXXXXXXXXXXKPIDGAKKEGIEXXXXXXXX 180
           YQ+KRRE + K+P     G+ +GGKGL+            KPI GA+KEG          
Sbjct: 467 YQQKRREAMNKQPAGFREGITRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGK 526

Query: 181 XXXXXXXXXXXXXXDFASSSFEGIRRVAD 267
                         D ASS+F+GI+R  +
Sbjct: 527 GLVGAVARPTGGIIDMASSTFQGIKRATE 555
>sp|Q96RL7|VP13A_HUMAN Vacuolar protein sorting 13A (Chorein) (Chorea-acanthocytosis
            protein)
          Length = 3174

 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 29/89 (32%), Positives = 40/89 (44%)
 Frame = +1

Query: 1    YQRKRREQLAKRPENLGVGLAQGGKGLIXXXXXXXXXXXXKPIDGAKKEGIEXXXXXXXX 180
            YQ+KRRE + K+P     G+ +GGKGL+            KPI GA+K G          
Sbjct: 2941 YQQKRREAMNKQPAGFREGITRGGKGLVSGFVSGITGIVTKPIKGAQKGGAAGFFKGVGK 3000

Query: 181  XXXXXXXXXXXXXXDFASSSFEGIRRVAD 267
                          D ASS+F+GI+R  +
Sbjct: 3001 GLVGAVARPTGGIIDMASSTFQGIKRATE 3029
>sp|P87319|YOS1_SCHPO Hypothetical protein C21C3.01c in chromosome II
          Length = 3011

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 20/83 (24%), Positives = 30/83 (36%)
 Frame = +1

Query: 7    RKRREQLAKRPENLGVGLAQGGKGLIXXXXXXXXXXXXKPIDGAKKEGIEXXXXXXXXXX 186
            R+R  ++  RP ++  G+  G   L             +PI GA++ G+           
Sbjct: 2841 RRRAARIRNRPVHILYGVTAGAASLYTGVRSGVRGLALQPIIGARRNGLPGLVKGLGKGL 2900

Query: 187  XXXXXXXXXXXXDFASSSFEGIR 255
                        DFASS  EG R
Sbjct: 2901 VGFTTKPLVGLFDFASSISEGAR 2923
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.314    0.138    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,947,017
Number of Sequences: 369166
Number of extensions: 227213
Number of successful extensions: 292
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 68,354,980
effective HSP length: 58
effective length of database: 57,640,350
effective search space used: 1729210500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)