Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_M20
(268 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9BGZ0|VP13A_MACFA Vacuolar protein sorting 13A (Chorein... 55 5e-08
sp|Q96RL7|VP13A_HUMAN Vacuolar protein sorting 13A (Chorein... 52 3e-07
sp|P87319|YOS1_SCHPO Hypothetical protein C21C3.01c in chro... 30 2.3
>sp|Q9BGZ0|VP13A_MACFA Vacuolar protein sorting 13A (Chorein) (Chorea-acanthocytosis
protein homolog)
Length = 619
Score = 55.1 bits (131), Expect = 5e-08
Identities = 30/89 (33%), Positives = 41/89 (46%)
Frame = +1
Query: 1 YQRKRREQLAKRPENLGVGLAQGGKGLIXXXXXXXXXXXXKPIDGAKKEGIEXXXXXXXX 180
YQ+KRRE + K+P G+ +GGKGL+ KPI GA+KEG
Sbjct: 467 YQQKRREAMNKQPAGFREGITRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGK 526
Query: 181 XXXXXXXXXXXXXXDFASSSFEGIRRVAD 267
D ASS+F+GI+R +
Sbjct: 527 GLVGAVARPTGGIIDMASSTFQGIKRATE 555
>sp|Q96RL7|VP13A_HUMAN Vacuolar protein sorting 13A (Chorein) (Chorea-acanthocytosis
protein)
Length = 3174
Score = 52.4 bits (124), Expect = 3e-07
Identities = 29/89 (32%), Positives = 40/89 (44%)
Frame = +1
Query: 1 YQRKRREQLAKRPENLGVGLAQGGKGLIXXXXXXXXXXXXKPIDGAKKEGIEXXXXXXXX 180
YQ+KRRE + K+P G+ +GGKGL+ KPI GA+K G
Sbjct: 2941 YQQKRREAMNKQPAGFREGITRGGKGLVSGFVSGITGIVTKPIKGAQKGGAAGFFKGVGK 3000
Query: 181 XXXXXXXXXXXXXXDFASSSFEGIRRVAD 267
D ASS+F+GI+R +
Sbjct: 3001 GLVGAVARPTGGIIDMASSTFQGIKRATE 3029
>sp|P87319|YOS1_SCHPO Hypothetical protein C21C3.01c in chromosome II
Length = 3011
Score = 29.6 bits (65), Expect = 2.3
Identities = 20/83 (24%), Positives = 30/83 (36%)
Frame = +1
Query: 7 RKRREQLAKRPENLGVGLAQGGKGLIXXXXXXXXXXXXKPIDGAKKEGIEXXXXXXXXXX 186
R+R ++ RP ++ G+ G L +PI GA++ G+
Sbjct: 2841 RRRAARIRNRPVHILYGVTAGAASLYTGVRSGVRGLALQPIIGARRNGLPGLVKGLGKGL 2900
Query: 187 XXXXXXXXXXXXDFASSSFEGIR 255
DFASS EG R
Sbjct: 2901 VGFTTKPLVGLFDFASSISEGAR 2923
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.314 0.138 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,947,017
Number of Sequences: 369166
Number of extensions: 227213
Number of successful extensions: 292
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 68,354,980
effective HSP length: 58
effective length of database: 57,640,350
effective search space used: 1729210500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)