Planaria EST Database


DrC_01816

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01816
         (787 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P02466|CO1A2_RAT  Collagen alpha 2(I) chain precursor          102   2e-21
sp|Q01149|CO1A2_MOUSE  Collagen alpha 2(I) chain precursor        101   3e-21
sp|O46392|CO1A2_CANFA  Collagen alpha 2(I) chain precursor         99   1e-20
sp|P28481|CO2A1_MOUSE  Collagen alpha 1(II) chain precursor ...    99   1e-20
sp|P02458|CO2A1_HUMAN  Collagen alpha 1(II) chain precursor ...    99   1e-20
sp|P02460|CA12_CHICK  Collagen alpha 1(II) chain precursor         99   1e-20
sp|P02465|CO1A2_BOVIN  Collagen alpha 2(I) chain precursor         96   1e-19
sp||P12105_3  [Segment 3 of 3] Collagen alpha 1(III) chain p...    96   1e-19
sp|P02457|CA11_CHICK  Collagen alpha 1(I) chain precursor          96   1e-19
sp|Q28668|CO1A2_RABIT  Collagen alpha 2(I) chain precursor         95   2e-19
>sp|P02466|CO1A2_RAT Collagen alpha 2(I) chain precursor
          Length = 1372

 Score =  102 bits (253), Expect = 2e-21
 Identities = 76/270 (28%), Positives = 128/270 (47%), Gaps = 19/270 (7%)
 Frame = +1

Query: 4    GPVGVNGEPGLMGPIGSTGRDGPTXXXXXXXXXXXXXXXXXXAMM-LPITYDVNRPM-YS 177
            GP GV G  G  GP G  G  GP                        P +    RP  Y 
Sbjct: 1081 GPAGVRGSQGSQGPAGPPGPPGPPGPPGVSGGGYDFGFEGGFYRADQPRSQPSLRPKDYE 1140

Query: 178  DDANAANILGS-DTIGQPLGTKESPARSCNHLKSINSDLKDGNYYIDPNGGKTNDAFEVF 354
             DA   ++    +T+  P G++++PAR+C  L+  + + K   Y+IDPN G T DA +V+
Sbjct: 1141 VDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWKSDYYWIDPNQGCTMDAIKVY 1200

Query: 355  CKMKLGETCISPKQ-GLFAKTSYSQDSINQYNSFGES-SGIQRFDYTIDN-------NQL 507
            C    GETCI  +     AK +YS+   N++   GE+ +G  +F+Y  +         QL
Sbjct: 1201 CDFSTGETCIQAQPVNTPAKNAYSRAQANKHVWLGETINGGSQFEYNAEGVSSKEMATQL 1260

Query: 508  MYLKMISSKGYQEVNVVC-NNMAVVE----RTEFPAIIFSDNNRELTKD-DHHLNYSIIK 669
             ++++++++  Q +   C N++A ++    R     I+   N+ EL  + +    Y+++ 
Sbjct: 1261 AFMRLLANRASQNITYHCKNSIAYLDEETGRLNKAVILQGSNDVELVAEGNSRFTYTVLV 1320

Query: 670  DECQNNSSEDSETVLQV-SGDPKRLPIRDI 756
            D C   ++E  +TV++  +  P RLP  DI
Sbjct: 1321 DGCSKKTNEWDKTVIEYKTNKPSRLPFLDI 1350

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = +1

Query: 1   KGPVGVNGEPGLMGPIGSTGRDGP 72
           +GP G  GEPG  GP GS G  GP
Sbjct: 120 QGPAGEPGEPGQTGPAGSRGPAGP 143

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 1   KGPVGVNGEPGLMGPIGSTGRDGP 72
           KGP G NG  G  GP+G+ G  GP
Sbjct: 750 KGPKGENGIVGPTGPVGAAGPSGP 773

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +1

Query: 1   KGPVGVNGEPGLMGPIGSTGRDG 69
           KGP G  G  G  GP G  GRDG
Sbjct: 32  KGPTGDRGPRGQRGPAGPRGRDG 54

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 1   KGPVGVNGEPGLMGPIGSTGRDGPT 75
           +GPVG  GE G  GP G  G  GP+
Sbjct: 831 QGPVGRTGEIGASGPPGFAGEKGPS 855

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 1   KGPVGVNGEPGLMGPIGSTGRDG 69
           +GP G  G PG+ G  G  GRDG
Sbjct: 912 RGPPGAVGSPGVNGAPGEAGRDG 934
>sp|Q01149|CO1A2_MOUSE Collagen alpha 2(I) chain precursor
          Length = 1372

 Score =  101 bits (251), Expect = 3e-21
 Identities = 74/270 (27%), Positives = 123/270 (45%), Gaps = 19/270 (7%)
 Frame = +1

Query: 4    GPVGVNGEPGLMGPIGSTGRDGPTXXXXXXXXXXXXXXXXXXAMM-LPITYDVNRPM-YS 177
            GP GV G  G  GP G  G  GP                        P +    RP  Y 
Sbjct: 1081 GPAGVRGSQGSQGPAGPPGPPGPPGPPGVSGGGYDFGFEGDFYRADQPRSQPSLRPKDYE 1140

Query: 178  DDANAANILGS-DTIGQPLGTKESPARSCNHLKSINSDLKDGNYYIDPNGGKTNDAFEVF 354
             DA   ++    +T+  P G++++PAR+C  L+  + +     Y+IDPN G T DA +V+
Sbjct: 1141 VDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWNSDYYWIDPNQGCTMDAIKVY 1200

Query: 355  CKMKLGETCISPKQ-GLFAKTSYSQDSINQYNSFGES-SGIQRFDYTIDN-------NQL 507
            C    GETCI  +     AK SYS+   N++   GE+ +G  +F+Y ++         QL
Sbjct: 1201 CDFSTGETCIQAQPVNTPAKNSYSRAQANKHVWLGETINGGSQFEYNVEGVSSKEMATQL 1260

Query: 508  MYLKMISSKGYQEVNVVCNNMAVVERTEF-----PAIIFSDNNRELTKD-DHHLNYSIIK 669
             ++++++++  Q +   C N       E        ++   N+ EL  + +    YS++ 
Sbjct: 1261 AFMRLLANRASQNITYHCKNSIAYLDEETGSLNKAVLLQGSNDVELVAEGNSRFTYSVLV 1320

Query: 670  DECQNNSSEDSETVLQV-SGDPKRLPIRDI 756
            D C   ++E  +T+++  +  P RLP  DI
Sbjct: 1321 DGCSKKTNEWGKTIIEYKTNKPSRLPFLDI 1350

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 1   KGPVGVNGEPGLMGPIGSTGRDGPT 75
           KG  G  GE G++GP GS G  GP+
Sbjct: 747 KGTKGPKGENGIVGPTGSVGAAGPS 771

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 1   KGPVGVNGEPGLMGPIGSTGRDGPT 75
           +GPVG  GE G  GP G  G  GP+
Sbjct: 831 QGPVGRTGETGASGPPGFVGEKGPS 855

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 4   GPVGVNGEPGLMGPIGSTGRDG 69
           GP+G++G PG  GP G+ G  G
Sbjct: 901 GPLGISGPPGARGPPGAVGSPG 922

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +1

Query: 1   KGPVGVNGEPGLMGPIGSTGRDG 69
           KGP G  G  G  GP G  GRDG
Sbjct: 32  KGPTGDRGPRGQRGPAGPRGRDG 54

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 1   KGPVGVNGEPGLMGPIGSTGRDG 69
           +GP G  G PG+ G  G  GRDG
Sbjct: 912 RGPPGAVGSPGVNGAPGEAGRDG 934
>sp|O46392|CO1A2_CANFA Collagen alpha 2(I) chain precursor
          Length = 1366

 Score = 99.4 bits (246), Expect = 1e-20
 Identities = 72/270 (26%), Positives = 123/270 (45%), Gaps = 19/270 (7%)
 Frame = +1

Query: 4    GPVGVNGEPGLMGPIGSTGRDGPTXXXXXXXXXXXXXXXXXXAMM-LPITYDVNRPM-YS 177
            GP G+ G  G  GP G  G  GP                        P +    RP  Y 
Sbjct: 1075 GPAGIRGSQGSQGPAGPPGPPGPPGPPGPSGGGYDFGYEGDFYRADQPRSPPSLRPKDYE 1134

Query: 178  DDANAANILGS-DTIGQPLGTKESPARSCNHLKSINSDLKDGNYYIDPNGGKTNDAFEVF 354
             DA   ++    +T+  P G++++PAR+C  L+  + +   G Y+IDPN G T DA +V+
Sbjct: 1135 VDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVY 1194

Query: 355  CKMKLGETCI-SPKQGLFAKTSYSQDSINQYNSFGES-SGIQRFDYTIDN-------NQL 507
            C    GETCI +  + + AK  Y    + ++   GE+ +G  +F+Y ++         QL
Sbjct: 1195 CDFSTGETCIRAQPENIPAKNWYRNSKVKKHIWLGETINGGTQFEYNVEGVTTKEMATQL 1254

Query: 508  MYLKMISSKGYQEVNVVCNNMAVVERTEF-----PAIIFSDNNRELTKD-DHHLNYSIIK 669
             +++++++   Q +   C N       E        I+   N+ EL  + +    Y+++ 
Sbjct: 1255 AFMRLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLV 1314

Query: 670  DECQNNSSEDSETVLQV-SGDPKRLPIRDI 756
            D C   ++E  +T+++  +  P RLPI DI
Sbjct: 1315 DGCSKKTNEWRKTIIEYKTNKPSRLPILDI 1344

 Score = 33.5 bits (75), Expect = 0.68
 Identities = 15/24 (62%), Positives = 15/24 (62%)
 Frame = +1

Query: 1   KGPVGVNGEPGLMGPIGSTGRDGP 72
           KGP G NG  G  GPIGS G  GP
Sbjct: 744 KGPKGENGPVGPTGPIGSAGPSGP 767

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +1

Query: 1   KGPVGVNGEPGLMGPIGSTGRDGPT 75
           +GPVG  GE G  GP G TG  GP+
Sbjct: 825 QGPVGRTGETGASGPPGFTGEKGPS 849

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +1

Query: 4    GPVGVNGEPGLMGPIGSTGRDG 69
            GPVG  G PG  GP+G TG+ G
Sbjct: 955  GPVGAVGAPGPHGPVGPTGKHG 976

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 1   KGPVGVNGEPGLMGPIGSTGRDGP 72
           +GP G  GEPG  GP G+ G  GP
Sbjct: 114 QGPAGEPGEPGQTGPAGARGPPGP 137

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 1   KGPVGVNGEPGLMGPIGSTGRDGP 72
           +GP G +G  G  GPIGS G  GP
Sbjct: 591 RGPPGESGAAGPSGPIGSRGPSGP 614

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 4   GPVGVNGEPGLMGPIGSTGRDGP 72
           GP G  GEPG++G  G+ G  GP
Sbjct: 616 GPDGNKGEPGVLGAPGTAGASGP 638

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +1

Query: 4   GPVGVNGEPGLMGPIGSTGRDGP 72
           G  GVNG PG  G  G+ G DGP
Sbjct: 913 GAPGVNGAPGEAGRDGNPGNDGP 935
>sp|P28481|CO2A1_MOUSE Collagen alpha 1(II) chain precursor [Contains: Chondrocalcin]
          Length = 1459

 Score = 99.4 bits (246), Expect = 1e-20
 Identities = 79/278 (28%), Positives = 133/278 (47%), Gaps = 27/278 (9%)
 Frame = +1

Query: 4    GPVGVNGEPGLMGPIGSTGRDGPTXXXXXXXXXXXXXXXXXXAMML-PITY----DVNRP 168
            GP G +GE G +GP GS G  GP                        P+ Y    + +  
Sbjct: 1160 GPRGRSGETGPVGPPGSPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPMQYMRADEADST 1219

Query: 169  MYSDDANAANILGS-----DTIGQPLGTKESPARSCNHLKSINSDLKDGNYYIDPNGGKT 333
            +   D      L S     ++I  P G++++PAR+C  LK  + + K G+Y+IDPN G T
Sbjct: 1220 LRQHDVEVDATLKSLNNQIESIRSPDGSRKNPARTCQDLKLCHPEWKSGDYWIDPNQGCT 1279

Query: 334  NDAFEVFCKMKLGETCISPKQGLFAKTSY--SQDSINQYNSFGES-SGIQRFDY------ 486
             DA +VFC M+ GETC+ P      + ++  S+    ++  FGE+ +G   F Y      
Sbjct: 1280 LDAMKVFCNMETGETCVYPNPATVPRKNWWSSKSKEKKHIWFGETMNGGFHFSYGDGNLA 1339

Query: 487  -TIDNNQLMYLKMISSKGYQEVNVVC-NNMAVVERT----EFPAIIFSDNNREL-TKDDH 645
                N Q+ +L+++S++G Q +   C N++A ++      +   +I   N+ E+  + + 
Sbjct: 1340 PNTANVQMTFLRLLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEMRAEGNS 1399

Query: 646  HLNYSIIKDECQNNSSEDSETVLQV-SGDPKRLPIRDI 756
               Y+ +KD C  ++ +  +TV++  S    RLPI DI
Sbjct: 1400 RFTYTALKDGCTKHTGKWGKTVIEYRSQKTSRLPIIDI 1437

 Score = 35.4 bits (80), Expect = 0.18
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = +1

Query: 4   GPVGVNGEPGLMGPIGSTGRDGP 72
           GP G NG PG  GP G  G+DGP
Sbjct: 878 GPPGANGNPGPAGPPGPAGKDGP 900

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 1    KGPVGVNGEPGLMGPIGSTGRDG 69
            +GP G  G PGL GP G  GR+G
Sbjct: 988  RGPPGPVGPPGLTGPAGEPGREG 1010

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 1   KGPVGVNGEPGLMGPIGSTGRDGP 72
           +GP G+ G PG  GP G+ G DGP
Sbjct: 688 QGPRGLPGTPGTDGPKGAAGPDGP 711
>sp|P02458|CO2A1_HUMAN Collagen alpha 1(II) chain precursor [Contains: Chondrocalcin]
          Length = 1418

 Score = 99.0 bits (245), Expect = 1e-20
 Identities = 81/278 (29%), Positives = 132/278 (47%), Gaps = 27/278 (9%)
 Frame = +1

Query: 4    GPVGVNGEPGLMGPIGSTGRDGPTXXXXXXXXXXXXXXXXXXAMML-PITY----DVNRP 168
            GP G +GE G  GP G+ G  GP                        P+ Y         
Sbjct: 1119 GPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGpreKGPDPLQYMRADQAAGG 1178

Query: 169  MYSDDANAANILGS-----DTIGQPLGTKESPARSCNHLKSINSDLKDGNYYIDPNGGKT 333
            +   DA     L S     ++I  P G++++PAR+C  LK  + + K G+Y+IDPN G T
Sbjct: 1179 LRQHDAEVDATLKSLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCT 1238

Query: 334  NDAFEVFCKMKLGETCISPKQGLFAKTSY--SQDSINQYNSFGES-SGIQRFDYTID--- 495
             DA +VFC M+ GETC+ P      K ++  S+    ++  FGE+ +G   F Y  D   
Sbjct: 1239 LDAMKVFCNMETGETCVYPNPANVPKKNWWSSKSKEKKHIWFGETINGGFHFSYGDDNLA 1298

Query: 496  ----NNQLMYLKMISSKGYQEVNVVC-NNMAVVERT----EFPAIIFSDNNREL-TKDDH 645
                N Q+ +L+++S++G Q +   C N++A ++      +   +I   N+ E+  + + 
Sbjct: 1299 PNTANVQMTFLRLLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNS 1358

Query: 646  HLNYSIIKDECQNNSSEDSETVLQV-SGDPKRLPIRDI 756
               Y+ +KD C  ++ +  +TV++  S    RLPI DI
Sbjct: 1359 RFTYTALKDGCTKHTGKWGKTVIEYRSQKTSRLPIIDI 1396

 Score = 34.7 bits (78), Expect = 0.30
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = +1

Query: 4   GPVGVNGEPGLMGPIGSTGRDGP 72
           GP G NG PG  GP G +G+DGP
Sbjct: 837 GPPGSNGNPGPPGPPGPSGKDGP 859

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 1    KGPVGVNGEPGLMGPIGSTGRDG 69
            +GP G  G PGL GP G  GR+G
Sbjct: 947  RGPPGPVGPPGLTGPAGEPGREG 969

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +1

Query: 4   GPVGVNGEPGLMGPIGSTGRDG 69
           GP G  GEPGL GP G  G  G
Sbjct: 867 GPPGRAGEPGLQGPAGPPGEKG 888

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +1

Query: 4   GPVGVNGEPGLMGPIGSTGRDGP 72
           GP G  GEPG  GP G+ G  GP
Sbjct: 882 GPPGEKGEPGDDGPSGAEGPPGP 904
>sp|P02460|CA12_CHICK Collagen alpha 1(II) chain precursor
          Length = 369

 Score = 99.0 bits (245), Expect = 1e-20
 Identities = 80/278 (28%), Positives = 128/278 (46%), Gaps = 27/278 (9%)
 Frame = +1

Query: 4   GPVGVNGEPGLMGPIGSTGRDGPTXXXXXXXXXXXXXXXXXXAMML-PITY----DVNRP 168
           GP G +GEPG  GP G+ G  GP                        PI Y    +    
Sbjct: 70  GPRGRSGEPGPAGPPGNPGPPGPPGPPGTGIDMSAFAGLGQTEKGPDPIRYMRADEAAGG 129

Query: 169 MYSDDANAANILGS-----DTIGQPLGTKESPARSCNHLKSINSDLKDGNYYIDPNGGKT 333
           +   D      L S     ++I  P G+K++PAR+C  +K  + + K G+Y+IDPN G T
Sbjct: 130 LRQHDVEVDATLKSLNNQIESIRSPEGSKKNPARTCRDIKLCHPEWKSGDYWIDPNQGCT 189

Query: 334 NDAFEVFCKMKLGETCISPKQGLFAKTSY--SQDSINQYNSFGES-SGIQRFDYTIDN-- 498
            DA +VFC M+ GETC+ P      + ++  S+    ++  F E+ +G   F Y  +N  
Sbjct: 190 LDAIKVFCNMETGETCVYPTPSSIPRKNWWTSKTKDKKHVWFAETINGGFHFSYGDENLS 249

Query: 499 -----NQLMYLKMISSKGYQEVNVVCNNMAVVERTEF-----PAIIFSDNNREL-TKDDH 645
                 Q+ +L+++S++G Q V   C N       E        +I   N+ E+  + + 
Sbjct: 250 PNTASIQMTFLRLLSTEGSQNVTYHCKNSIAYMDEETGNLKKAILIQGSNDVEIRAEGNS 309

Query: 646 HLNYSIIKDECQNNSSEDSETVLQV-SGDPKRLPIRDI 756
              YS+++D C  ++ +  +TV++  S    RLPI DI
Sbjct: 310 RFTYSVLEDGCTKHTGKWGKTVIEYRSQKTSRLPIVDI 347
>sp|P02465|CO1A2_BOVIN Collagen alpha 2(I) chain precursor
          Length = 1364

 Score = 95.9 bits (237), Expect = 1e-19
 Identities = 71/270 (26%), Positives = 121/270 (44%), Gaps = 19/270 (7%)
 Frame = +1

Query: 4    GPVGVNGEPGLMGPIGSTGRDGPTXXXXXXXXXXXXXXXXXXAMM-LPITYDVNRPM-YS 177
            GP G+ G  G  GP G  G  GP                        P +    RP  Y 
Sbjct: 1073 GPAGIRGSQGSQGPAGPPGPPGPPGPPGPSGGGYEFGFDGDFYRADQPRSPTSLRPKDYE 1132

Query: 178  DDANAANILGS-DTIGQPLGTKESPARSCNHLKSINSDLKDGNYYIDPNGGKTNDAFEVF 354
             DA   ++    +T+  P G++++PAR+C  L+  + +   G Y+IDPN G T DA +V+
Sbjct: 1133 VDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVY 1192

Query: 355  CKMKLGETCI-SPKQGLFAKTSYSQDSINQYNSFGES-SGIQRFDYTIDN-------NQL 507
            C    GETCI +  + +  K  Y      ++   GE+ +G  +F+Y ++         QL
Sbjct: 1193 CDFSTGETCIRAQPEDIPVKNWYRNSKAKKHVWVGETINGGTQFEYNVEGVTTKEMATQL 1252

Query: 508  MYLKMISSKGYQEVNVVCNNMAVVERTEF-----PAIIFSDNNRELTKD-DHHLNYSIIK 669
             +++++++   Q +   C N       E        I+   N+ EL  + +    Y+++ 
Sbjct: 1253 AFMRLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLV 1312

Query: 670  DECQNNSSEDSETVLQV-SGDPKRLPIRDI 756
            D C   ++E  +T+++  +  P RLPI DI
Sbjct: 1313 DGCSKKTNEWQKTIIEYKTNKPSRLPILDI 1342

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 1   KGPVGVNGEPGLMGPIGSTGRDGP 72
           KGP G NG  G  GP+G+ G  GP
Sbjct: 742 KGPKGENGPVGPTGPVGAAGPSGP 765

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 4    GPVGVNGEPGLMGPIGSTGRDG 69
            GPVG  G PG  GP+G  G+ G
Sbjct: 953  GPVGAAGAPGPQGPVGPVGKHG 974

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 1   KGPVGVNGEPGLMGPIGSTGRDGP 72
           +GP G  GEPG  GP G+ G  GP
Sbjct: 112 QGPPGEPGEPGQTGPAGARGPPGP 135

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 1   KGPVGVNGEPGLMGPIGSTGRDGPT 75
           +GPVG +GE G  GP G  G  GP+
Sbjct: 823 QGPVGRSGETGASGPPGFVGEKGPS 847

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 1   KGPVGVNGEPGLMGPIGSTGRDGP 72
           +GP G +G  G  GPIGS G  GP
Sbjct: 589 RGPPGESGAAGPTGPIGSRGPSGP 612

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 4   GPVGVNGEPGLMGPIGSTGRDGPT 75
           GP G  GEPG++G  G+ G  GP+
Sbjct: 614 GPDGNKGEPGVVGAPGTAGPSGPS 637

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 14/22 (63%), Positives = 14/22 (63%)
 Frame = +1

Query: 4   GPVGVNGEPGLMGPIGSTGRDG 69
           G  G  GE GL G IGS GRDG
Sbjct: 650 GGKGEKGETGLRGDIGSPGRDG 671

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 4   GPVGVNGEPGLMGPIGSTGRDGP 72
           GP G++G PG  GP G  G  GP
Sbjct: 797 GPSGISGPPGPPGPAGKEGLRGP 819

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 1   KGPVGVNGEPGLMGPIGSTGRDGP 72
           +G  G +G  G+MGP GS G  GP
Sbjct: 403 RGLPGADGRAGVMGPAGSRGATGP 426

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 4   GPVGVNGEPGLMGPIGSTGRDGP 72
           GP G NG+ G  GP G  G  GP
Sbjct: 683 GPAGANGDRGEAGPAGPAGPAGP 705

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 4   GPVGVNGEPGLMGPIGSTGRDG 69
           GP+G+ G PG  GP G+ G  G
Sbjct: 893 GPLGIAGPPGARGPPGNVGNPG 914
>sp||P12105_3 [Segment 3 of 3] Collagen alpha 1(III) chain precursor
          Length = 340

 Score = 95.9 bits (237), Expect = 1e-19
 Identities = 74/279 (26%), Positives = 124/279 (44%), Gaps = 28/279 (10%)
 Frame = +1

Query: 4   GPVGVNGEPGLMGPIGSTGRDGPTXXXXXXXXXXXXXXXXXXAMMLPITYDVNRPMYSDD 183
           GP G  GE G  GP G  G  GP+                     +   Y+       ++
Sbjct: 43  GPRGNRGESGPAGPPGQPGLPGPSGPPGPCCGGGVASLGAGEKGPVGYGYEYRDEPKENE 102

Query: 184 ANAANILGS--------DTIGQPLGTKESPARSCNHLKSINSDLKDGNYYIDPNGGKTND 339
            N   I+ S        + I  P G++++PAR+C  LK  + +LK G Y+IDPN G   D
Sbjct: 103 INLGEIMSSMKSINNQIENILSPDGSRKNPARNCRDLKFCHPELKSGEYWIDPNQGCKMD 162

Query: 340 AFEVFCKMKLGETCISPKQGLFAKTSY--SQDSINQYNSFGES-SGIQRFDY-------T 489
           A +V+C M+ GETC+S       + ++  ++ S  ++  FGES  G  +F Y        
Sbjct: 163 AIKVYCNMETGETCLSANPATVPRKNWWTTESSGKKHVWFGESMKGGFQFSYGDPDLPED 222

Query: 490 IDNNQLMYLKMISSKGYQEVNVVCNNMA---------VVERTEFPAIIFSDNNRELTKDD 642
           +   QL +L+++SS+  Q +   C N           V +  +  + + +D   E    +
Sbjct: 223 VSEVQLAFLRILSSRASQNITYHCKNSIAYMNQASGNVKKALKLMSSVETDIKAE---GN 279

Query: 643 HHLNYSIIKDECQNNSSEDSETVLQV-SGDPKRLPIRDI 756
               Y++++D C  ++ E  +TV +  +    RLP+ DI
Sbjct: 280 SKYMYAVLEDGCTKHTGEWGKTVFEYRTRKTMRLPVVDI 318
>sp|P02457|CA11_CHICK Collagen alpha 1(I) chain precursor
          Length = 1453

 Score = 95.5 bits (236), Expect = 1e-19
 Identities = 79/283 (27%), Positives = 123/283 (43%), Gaps = 32/283 (11%)
 Frame = +1

Query: 4    GPVGVNGEPGLMGPIGSTGRDGPTXXXXXXXXXXXXXXXXXXAMMLPITYDVNRPMYSDD 183
            GP G  G  G +GP+G  G  GP                          +D  R   +DD
Sbjct: 1152 GPPGPRGRTGEVGPVGPPGPPGPPGPPGPPSGGFDFSFLPQPPQ--EKAHDGGRYYRADD 1209

Query: 184  ANAA--NILGSDT-----------IGQPLGTKESPARSCNHLKSINSDLKDGNYYIDPNG 324
            AN      L  DT           I  P GT+++PAR+C  LK  + D K G Y+IDPN 
Sbjct: 1210 ANVMRDRDLEVDTTLKSLSQQIENIRSPEGTRKNPARTCRDLKMCHGDWKSGEYWIDPNQ 1269

Query: 325  GKTNDAFEVFCKMKLGETCISPKQGLFAKTSY---SQDSINQYNSFGE--SSGIQRFDYT 489
            G   DA +V+C M+ GETC+ P Q   A+ ++         ++  FGE  S G Q F+Y 
Sbjct: 1270 GCNLDAIKVYCNMETGETCVYPTQATIAQKNWYLSKNPKEKKHVWFGETMSDGFQ-FEYG 1328

Query: 490  IDNN-------QLMYLKMISSKGYQEVNVVCNNMAV-----VERTEFPAIIFSDNNREL- 630
             + +       QL +L+++S++  Q V   C N            +   ++   N  E+ 
Sbjct: 1329 GEGSNPADVAIQLTFLRLMSTEATQNVTYHCKNSVAYMDHDTGNLKKALLLQGANEIEIR 1388

Query: 631  TKDDHHLNYSIIKDECQNNSSEDSETVLQV-SGDPKRLPIRDI 756
             + +    Y + +D C +++    +TV++  +    RLPI D+
Sbjct: 1389 AEGNSRFTYGVTEDGCTSHTGAWGKTVIEYKTTKTSRLPIIDL 1431

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 1    KGPVGVNGEPGLMGPIGSTGRDG 69
            +GP G  G PGL GP G  GR+G
Sbjct: 983  RGPPGPMGPPGLAGPPGEAGREG 1005

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +1

Query: 4   GPVGVNGEPGLMGPIGSTGRDGP 72
           GP G  G PG  GPIG+ G  GP
Sbjct: 918 GPPGEKGSPGADGPIGAPGTPGP 940

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 1   KGPVGVNGEPGLMGPIGSTGRDGP 72
           +GP G  GEPG  GP+G  G  GP
Sbjct: 191 QGPPGEPGEPGASGPMGPRGPAGP 214

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +1

Query: 1   KGPVGVNGEPGLMGPIGSTGRDG 69
           KGP G  G PG +GP GS G  G
Sbjct: 494 KGPPGERGSPGAVGPKGSPGEAG 516

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 4    GPVGVNGEPGLMGPIGSTGRDG 69
            GP G  G PG  GP+G  G++G
Sbjct: 1032 GPPGAPGAPGAPGPVGPAGKNG 1053
>sp|Q28668|CO1A2_RABIT Collagen alpha 2(I) chain precursor
          Length = 526

 Score = 95.1 bits (235), Expect = 2e-19
 Identities = 70/270 (25%), Positives = 120/270 (44%), Gaps = 19/270 (7%)
 Frame = +1

Query: 4    GPVGVNGEPGLMGPIGSTGRDGPTXXXXXXXXXXXXXXXXXXAMM-LPITYDVNRPM-YS 177
            GP G+ G  G  GP G  G  GP                        P +    RP  Y 
Sbjct: 235  GPAGLRGSQGSQGPAGPPGPPGPPGPPGASGGGYDFGYDGDFYRADQPRSPPSLRPKDYE 294

Query: 178  DDANAANILGS-DTIGQPLGTKESPARSCNHLKSINSDLKDGNYYIDPNGGKTNDAFEVF 354
             DA   ++    +T+  P G++++PAR+C  L+  + +   G Y+IDPN G T DA +V+
Sbjct: 295  VDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVY 354

Query: 355  CKMKLGETCI-SPKQGLFAKTSYSQDSINQYNSFGES-SGIQRFDYTIDN-------NQL 507
            C    GETCI +  + +  K  Y      ++   GE+ +G  +F+Y ++         QL
Sbjct: 355  CDFSTGETCIRAQPENISVKNWYKSSKAKKHVWLGETINGGTQFEYNVEGVTSKEMATQL 414

Query: 508  MYLKMISSKGYQEVNVVCNNMAVVERTEF-----PAIIFSDNNRELTKD-DHHLNYSIIK 669
             +++++++   Q +   C N       E        I+   N+ EL  + +    Y+++ 
Sbjct: 415  AFMRLLANHASQNITYHCKNSIAYMDEETGNLNKAVILQGSNDVELVAEGNSRFTYTVLV 474

Query: 670  DECQNNSSEDSETVLQV-SGDPKRLPIRDI 756
            D C   ++E  +T+++  +  P RLP  DI
Sbjct: 475  DGCTKKTNEWGKTIIEYKTNKPSRLPFLDI 504

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 4   GPVGVNGEPGLMGPIGSTGRDG 69
           GPVG  G PG  G +G TG+ G
Sbjct: 115 GPVGAAGAPGPQGSVGPTGKHG 136

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 1   KGPVGVNGEPGLMGPIGSTGRDG 69
           +GP G  G PG+ G  G  GRDG
Sbjct: 66  RGPPGAVGSPGVNGAPGEAGRDG 88
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.312    0.132    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,912,292
Number of Sequences: 369166
Number of extensions: 1652226
Number of successful extensions: 9994
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9820
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7405750800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)