Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_K24
(787 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P02466|CO1A2_RAT Collagen alpha 2(I) chain precursor 102 2e-21
sp|Q01149|CO1A2_MOUSE Collagen alpha 2(I) chain precursor 101 3e-21
sp|O46392|CO1A2_CANFA Collagen alpha 2(I) chain precursor 99 1e-20
sp|P28481|CO2A1_MOUSE Collagen alpha 1(II) chain precursor ... 99 1e-20
sp|P02458|CO2A1_HUMAN Collagen alpha 1(II) chain precursor ... 99 1e-20
sp|P02460|CA12_CHICK Collagen alpha 1(II) chain precursor 99 1e-20
sp|P02465|CO1A2_BOVIN Collagen alpha 2(I) chain precursor 96 1e-19
sp||P12105_3 [Segment 3 of 3] Collagen alpha 1(III) chain p... 96 1e-19
sp|P02457|CA11_CHICK Collagen alpha 1(I) chain precursor 96 1e-19
sp|Q28668|CO1A2_RABIT Collagen alpha 2(I) chain precursor 95 2e-19
>sp|P02466|CO1A2_RAT Collagen alpha 2(I) chain precursor
Length = 1372
Score = 102 bits (253), Expect = 2e-21
Identities = 76/270 (28%), Positives = 128/270 (47%), Gaps = 19/270 (7%)
Frame = +1
Query: 4 GPVGVNGEPGLMGPIGSTGRDGPTXXXXXXXXXXXXXXXXXXAMM-LPITYDVNRPM-YS 177
GP GV G G GP G G GP P + RP Y
Sbjct: 1081 GPAGVRGSQGSQGPAGPPGPPGPPGPPGVSGGGYDFGFEGGFYRADQPRSQPSLRPKDYE 1140
Query: 178 DDANAANILGS-DTIGQPLGTKESPARSCNHLKSINSDLKDGNYYIDPNGGKTNDAFEVF 354
DA ++ +T+ P G++++PAR+C L+ + + K Y+IDPN G T DA +V+
Sbjct: 1141 VDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWKSDYYWIDPNQGCTMDAIKVY 1200
Query: 355 CKMKLGETCISPKQ-GLFAKTSYSQDSINQYNSFGES-SGIQRFDYTIDN-------NQL 507
C GETCI + AK +YS+ N++ GE+ +G +F+Y + QL
Sbjct: 1201 CDFSTGETCIQAQPVNTPAKNAYSRAQANKHVWLGETINGGSQFEYNAEGVSSKEMATQL 1260
Query: 508 MYLKMISSKGYQEVNVVC-NNMAVVE----RTEFPAIIFSDNNRELTKD-DHHLNYSIIK 669
++++++++ Q + C N++A ++ R I+ N+ EL + + Y+++
Sbjct: 1261 AFMRLLANRASQNITYHCKNSIAYLDEETGRLNKAVILQGSNDVELVAEGNSRFTYTVLV 1320
Query: 670 DECQNNSSEDSETVLQV-SGDPKRLPIRDI 756
D C ++E +TV++ + P RLP DI
Sbjct: 1321 DGCSKKTNEWDKTVIEYKTNKPSRLPFLDI 1350
Score = 32.7 bits (73), Expect = 1.2
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +1
Query: 1 KGPVGVNGEPGLMGPIGSTGRDGP 72
+GP G GEPG GP GS G GP
Sbjct: 120 QGPAGEPGEPGQTGPAGSRGPAGP 143
Score = 31.2 bits (69), Expect = 3.4
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 1 KGPVGVNGEPGLMGPIGSTGRDGP 72
KGP G NG G GP+G+ G GP
Sbjct: 750 KGPKGENGIVGPTGPVGAAGPSGP 773
Score = 30.0 bits (66), Expect = 7.5
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +1
Query: 1 KGPVGVNGEPGLMGPIGSTGRDG 69
KGP G G G GP G GRDG
Sbjct: 32 KGPTGDRGPRGQRGPAGPRGRDG 54
Score = 30.0 bits (66), Expect = 7.5
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 1 KGPVGVNGEPGLMGPIGSTGRDGPT 75
+GPVG GE G GP G G GP+
Sbjct: 831 QGPVGRTGEIGASGPPGFAGEKGPS 855
Score = 29.6 bits (65), Expect = 9.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 1 KGPVGVNGEPGLMGPIGSTGRDG 69
+GP G G PG+ G G GRDG
Sbjct: 912 RGPPGAVGSPGVNGAPGEAGRDG 934
>sp|Q01149|CO1A2_MOUSE Collagen alpha 2(I) chain precursor
Length = 1372
Score = 101 bits (251), Expect = 3e-21
Identities = 74/270 (27%), Positives = 123/270 (45%), Gaps = 19/270 (7%)
Frame = +1
Query: 4 GPVGVNGEPGLMGPIGSTGRDGPTXXXXXXXXXXXXXXXXXXAMM-LPITYDVNRPM-YS 177
GP GV G G GP G G GP P + RP Y
Sbjct: 1081 GPAGVRGSQGSQGPAGPPGPPGPPGPPGVSGGGYDFGFEGDFYRADQPRSQPSLRPKDYE 1140
Query: 178 DDANAANILGS-DTIGQPLGTKESPARSCNHLKSINSDLKDGNYYIDPNGGKTNDAFEVF 354
DA ++ +T+ P G++++PAR+C L+ + + Y+IDPN G T DA +V+
Sbjct: 1141 VDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWNSDYYWIDPNQGCTMDAIKVY 1200
Query: 355 CKMKLGETCISPKQ-GLFAKTSYSQDSINQYNSFGES-SGIQRFDYTIDN-------NQL 507
C GETCI + AK SYS+ N++ GE+ +G +F+Y ++ QL
Sbjct: 1201 CDFSTGETCIQAQPVNTPAKNSYSRAQANKHVWLGETINGGSQFEYNVEGVSSKEMATQL 1260
Query: 508 MYLKMISSKGYQEVNVVCNNMAVVERTEF-----PAIIFSDNNRELTKD-DHHLNYSIIK 669
++++++++ Q + C N E ++ N+ EL + + YS++
Sbjct: 1261 AFMRLLANRASQNITYHCKNSIAYLDEETGSLNKAVLLQGSNDVELVAEGNSRFTYSVLV 1320
Query: 670 DECQNNSSEDSETVLQV-SGDPKRLPIRDI 756
D C ++E +T+++ + P RLP DI
Sbjct: 1321 DGCSKKTNEWGKTIIEYKTNKPSRLPFLDI 1350
Score = 31.2 bits (69), Expect = 3.4
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 1 KGPVGVNGEPGLMGPIGSTGRDGPT 75
KG G GE G++GP GS G GP+
Sbjct: 747 KGTKGPKGENGIVGPTGSVGAAGPS 771
Score = 30.8 bits (68), Expect = 4.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 1 KGPVGVNGEPGLMGPIGSTGRDGPT 75
+GPVG GE G GP G G GP+
Sbjct: 831 QGPVGRTGETGASGPPGFVGEKGPS 855
Score = 30.4 bits (67), Expect = 5.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 4 GPVGVNGEPGLMGPIGSTGRDG 69
GP+G++G PG GP G+ G G
Sbjct: 901 GPLGISGPPGARGPPGAVGSPG 922
Score = 30.0 bits (66), Expect = 7.5
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +1
Query: 1 KGPVGVNGEPGLMGPIGSTGRDG 69
KGP G G G GP G GRDG
Sbjct: 32 KGPTGDRGPRGQRGPAGPRGRDG 54
Score = 29.6 bits (65), Expect = 9.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 1 KGPVGVNGEPGLMGPIGSTGRDG 69
+GP G G PG+ G G GRDG
Sbjct: 912 RGPPGAVGSPGVNGAPGEAGRDG 934
>sp|O46392|CO1A2_CANFA Collagen alpha 2(I) chain precursor
Length = 1366
Score = 99.4 bits (246), Expect = 1e-20
Identities = 72/270 (26%), Positives = 123/270 (45%), Gaps = 19/270 (7%)
Frame = +1
Query: 4 GPVGVNGEPGLMGPIGSTGRDGPTXXXXXXXXXXXXXXXXXXAMM-LPITYDVNRPM-YS 177
GP G+ G G GP G G GP P + RP Y
Sbjct: 1075 GPAGIRGSQGSQGPAGPPGPPGPPGPPGPSGGGYDFGYEGDFYRADQPRSPPSLRPKDYE 1134
Query: 178 DDANAANILGS-DTIGQPLGTKESPARSCNHLKSINSDLKDGNYYIDPNGGKTNDAFEVF 354
DA ++ +T+ P G++++PAR+C L+ + + G Y+IDPN G T DA +V+
Sbjct: 1135 VDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVY 1194
Query: 355 CKMKLGETCI-SPKQGLFAKTSYSQDSINQYNSFGES-SGIQRFDYTIDN-------NQL 507
C GETCI + + + AK Y + ++ GE+ +G +F+Y ++ QL
Sbjct: 1195 CDFSTGETCIRAQPENIPAKNWYRNSKVKKHIWLGETINGGTQFEYNVEGVTTKEMATQL 1254
Query: 508 MYLKMISSKGYQEVNVVCNNMAVVERTEF-----PAIIFSDNNRELTKD-DHHLNYSIIK 669
+++++++ Q + C N E I+ N+ EL + + Y+++
Sbjct: 1255 AFMRLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLV 1314
Query: 670 DECQNNSSEDSETVLQV-SGDPKRLPIRDI 756
D C ++E +T+++ + P RLPI DI
Sbjct: 1315 DGCSKKTNEWRKTIIEYKTNKPSRLPILDI 1344
Score = 33.5 bits (75), Expect = 0.68
Identities = 15/24 (62%), Positives = 15/24 (62%)
Frame = +1
Query: 1 KGPVGVNGEPGLMGPIGSTGRDGP 72
KGP G NG G GPIGS G GP
Sbjct: 744 KGPKGENGPVGPTGPIGSAGPSGP 767
Score = 32.7 bits (73), Expect = 1.2
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +1
Query: 1 KGPVGVNGEPGLMGPIGSTGRDGPT 75
+GPVG GE G GP G TG GP+
Sbjct: 825 QGPVGRTGETGASGPPGFTGEKGPS 849
Score = 32.3 bits (72), Expect = 1.5
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 4 GPVGVNGEPGLMGPIGSTGRDG 69
GPVG G PG GP+G TG+ G
Sbjct: 955 GPVGAVGAPGPHGPVGPTGKHG 976
Score = 32.0 bits (71), Expect = 2.0
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 1 KGPVGVNGEPGLMGPIGSTGRDGP 72
+GP G GEPG GP G+ G GP
Sbjct: 114 QGPAGEPGEPGQTGPAGARGPPGP 137
Score = 30.4 bits (67), Expect = 5.7
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 1 KGPVGVNGEPGLMGPIGSTGRDGP 72
+GP G +G G GPIGS G GP
Sbjct: 591 RGPPGESGAAGPSGPIGSRGPSGP 614
Score = 30.4 bits (67), Expect = 5.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 4 GPVGVNGEPGLMGPIGSTGRDGP 72
GP G GEPG++G G+ G GP
Sbjct: 616 GPDGNKGEPGVLGAPGTAGASGP 638
Score = 29.6 bits (65), Expect = 9.8
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 4 GPVGVNGEPGLMGPIGSTGRDGP 72
G GVNG PG G G+ G DGP
Sbjct: 913 GAPGVNGAPGEAGRDGNPGNDGP 935
>sp|P28481|CO2A1_MOUSE Collagen alpha 1(II) chain precursor [Contains: Chondrocalcin]
Length = 1459
Score = 99.4 bits (246), Expect = 1e-20
Identities = 79/278 (28%), Positives = 133/278 (47%), Gaps = 27/278 (9%)
Frame = +1
Query: 4 GPVGVNGEPGLMGPIGSTGRDGPTXXXXXXXXXXXXXXXXXXAMML-PITY----DVNRP 168
GP G +GE G +GP GS G GP P+ Y + +
Sbjct: 1160 GPRGRSGETGPVGPPGSPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPMQYMRADEADST 1219
Query: 169 MYSDDANAANILGS-----DTIGQPLGTKESPARSCNHLKSINSDLKDGNYYIDPNGGKT 333
+ D L S ++I P G++++PAR+C LK + + K G+Y+IDPN G T
Sbjct: 1220 LRQHDVEVDATLKSLNNQIESIRSPDGSRKNPARTCQDLKLCHPEWKSGDYWIDPNQGCT 1279
Query: 334 NDAFEVFCKMKLGETCISPKQGLFAKTSY--SQDSINQYNSFGES-SGIQRFDY------ 486
DA +VFC M+ GETC+ P + ++ S+ ++ FGE+ +G F Y
Sbjct: 1280 LDAMKVFCNMETGETCVYPNPATVPRKNWWSSKSKEKKHIWFGETMNGGFHFSYGDGNLA 1339
Query: 487 -TIDNNQLMYLKMISSKGYQEVNVVC-NNMAVVERT----EFPAIIFSDNNREL-TKDDH 645
N Q+ +L+++S++G Q + C N++A ++ + +I N+ E+ + +
Sbjct: 1340 PNTANVQMTFLRLLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEMRAEGNS 1399
Query: 646 HLNYSIIKDECQNNSSEDSETVLQV-SGDPKRLPIRDI 756
Y+ +KD C ++ + +TV++ S RLPI DI
Sbjct: 1400 RFTYTALKDGCTKHTGKWGKTVIEYRSQKTSRLPIIDI 1437
Score = 35.4 bits (80), Expect = 0.18
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +1
Query: 4 GPVGVNGEPGLMGPIGSTGRDGP 72
GP G NG PG GP G G+DGP
Sbjct: 878 GPPGANGNPGPAGPPGPAGKDGP 900
Score = 32.0 bits (71), Expect = 2.0
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +1
Query: 1 KGPVGVNGEPGLMGPIGSTGRDG 69
+GP G G PGL GP G GR+G
Sbjct: 988 RGPPGPVGPPGLTGPAGEPGREG 1010
Score = 31.6 bits (70), Expect = 2.6
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 1 KGPVGVNGEPGLMGPIGSTGRDGP 72
+GP G+ G PG GP G+ G DGP
Sbjct: 688 QGPRGLPGTPGTDGPKGAAGPDGP 711
>sp|P02458|CO2A1_HUMAN Collagen alpha 1(II) chain precursor [Contains: Chondrocalcin]
Length = 1418
Score = 99.0 bits (245), Expect = 1e-20
Identities = 81/278 (29%), Positives = 132/278 (47%), Gaps = 27/278 (9%)
Frame = +1
Query: 4 GPVGVNGEPGLMGPIGSTGRDGPTXXXXXXXXXXXXXXXXXXAMML-PITY----DVNRP 168
GP G +GE G GP G+ G GP P+ Y
Sbjct: 1119 GPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGpreKGPDPLQYMRADQAAGG 1178
Query: 169 MYSDDANAANILGS-----DTIGQPLGTKESPARSCNHLKSINSDLKDGNYYIDPNGGKT 333
+ DA L S ++I P G++++PAR+C LK + + K G+Y+IDPN G T
Sbjct: 1179 LRQHDAEVDATLKSLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCT 1238
Query: 334 NDAFEVFCKMKLGETCISPKQGLFAKTSY--SQDSINQYNSFGES-SGIQRFDYTID--- 495
DA +VFC M+ GETC+ P K ++ S+ ++ FGE+ +G F Y D
Sbjct: 1239 LDAMKVFCNMETGETCVYPNPANVPKKNWWSSKSKEKKHIWFGETINGGFHFSYGDDNLA 1298
Query: 496 ----NNQLMYLKMISSKGYQEVNVVC-NNMAVVERT----EFPAIIFSDNNREL-TKDDH 645
N Q+ +L+++S++G Q + C N++A ++ + +I N+ E+ + +
Sbjct: 1299 PNTANVQMTFLRLLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNS 1358
Query: 646 HLNYSIIKDECQNNSSEDSETVLQV-SGDPKRLPIRDI 756
Y+ +KD C ++ + +TV++ S RLPI DI
Sbjct: 1359 RFTYTALKDGCTKHTGKWGKTVIEYRSQKTSRLPIIDI 1396
Score = 34.7 bits (78), Expect = 0.30
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +1
Query: 4 GPVGVNGEPGLMGPIGSTGRDGP 72
GP G NG PG GP G +G+DGP
Sbjct: 837 GPPGSNGNPGPPGPPGPSGKDGP 859
Score = 32.0 bits (71), Expect = 2.0
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +1
Query: 1 KGPVGVNGEPGLMGPIGSTGRDG 69
+GP G G PGL GP G GR+G
Sbjct: 947 RGPPGPVGPPGLTGPAGEPGREG 969
Score = 30.4 bits (67), Expect = 5.7
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +1
Query: 4 GPVGVNGEPGLMGPIGSTGRDG 69
GP G GEPGL GP G G G
Sbjct: 867 GPPGRAGEPGLQGPAGPPGEKG 888
Score = 29.6 bits (65), Expect = 9.8
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 4 GPVGVNGEPGLMGPIGSTGRDGP 72
GP G GEPG GP G+ G GP
Sbjct: 882 GPPGEKGEPGDDGPSGAEGPPGP 904
>sp|P02460|CA12_CHICK Collagen alpha 1(II) chain precursor
Length = 369
Score = 99.0 bits (245), Expect = 1e-20
Identities = 80/278 (28%), Positives = 128/278 (46%), Gaps = 27/278 (9%)
Frame = +1
Query: 4 GPVGVNGEPGLMGPIGSTGRDGPTXXXXXXXXXXXXXXXXXXAMML-PITY----DVNRP 168
GP G +GEPG GP G+ G GP PI Y +
Sbjct: 70 GPRGRSGEPGPAGPPGNPGPPGPPGPPGTGIDMSAFAGLGQTEKGPDPIRYMRADEAAGG 129
Query: 169 MYSDDANAANILGS-----DTIGQPLGTKESPARSCNHLKSINSDLKDGNYYIDPNGGKT 333
+ D L S ++I P G+K++PAR+C +K + + K G+Y+IDPN G T
Sbjct: 130 LRQHDVEVDATLKSLNNQIESIRSPEGSKKNPARTCRDIKLCHPEWKSGDYWIDPNQGCT 189
Query: 334 NDAFEVFCKMKLGETCISPKQGLFAKTSY--SQDSINQYNSFGES-SGIQRFDYTIDN-- 498
DA +VFC M+ GETC+ P + ++ S+ ++ F E+ +G F Y +N
Sbjct: 190 LDAIKVFCNMETGETCVYPTPSSIPRKNWWTSKTKDKKHVWFAETINGGFHFSYGDENLS 249
Query: 499 -----NQLMYLKMISSKGYQEVNVVCNNMAVVERTEF-----PAIIFSDNNREL-TKDDH 645
Q+ +L+++S++G Q V C N E +I N+ E+ + +
Sbjct: 250 PNTASIQMTFLRLLSTEGSQNVTYHCKNSIAYMDEETGNLKKAILIQGSNDVEIRAEGNS 309
Query: 646 HLNYSIIKDECQNNSSEDSETVLQV-SGDPKRLPIRDI 756
YS+++D C ++ + +TV++ S RLPI DI
Sbjct: 310 RFTYSVLEDGCTKHTGKWGKTVIEYRSQKTSRLPIVDI 347
>sp|P02465|CO1A2_BOVIN Collagen alpha 2(I) chain precursor
Length = 1364
Score = 95.9 bits (237), Expect = 1e-19
Identities = 71/270 (26%), Positives = 121/270 (44%), Gaps = 19/270 (7%)
Frame = +1
Query: 4 GPVGVNGEPGLMGPIGSTGRDGPTXXXXXXXXXXXXXXXXXXAMM-LPITYDVNRPM-YS 177
GP G+ G G GP G G GP P + RP Y
Sbjct: 1073 GPAGIRGSQGSQGPAGPPGPPGPPGPPGPSGGGYEFGFDGDFYRADQPRSPTSLRPKDYE 1132
Query: 178 DDANAANILGS-DTIGQPLGTKESPARSCNHLKSINSDLKDGNYYIDPNGGKTNDAFEVF 354
DA ++ +T+ P G++++PAR+C L+ + + G Y+IDPN G T DA +V+
Sbjct: 1133 VDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVY 1192
Query: 355 CKMKLGETCI-SPKQGLFAKTSYSQDSINQYNSFGES-SGIQRFDYTIDN-------NQL 507
C GETCI + + + K Y ++ GE+ +G +F+Y ++ QL
Sbjct: 1193 CDFSTGETCIRAQPEDIPVKNWYRNSKAKKHVWVGETINGGTQFEYNVEGVTTKEMATQL 1252
Query: 508 MYLKMISSKGYQEVNVVCNNMAVVERTEF-----PAIIFSDNNRELTKD-DHHLNYSIIK 669
+++++++ Q + C N E I+ N+ EL + + Y+++
Sbjct: 1253 AFMRLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLV 1312
Query: 670 DECQNNSSEDSETVLQV-SGDPKRLPIRDI 756
D C ++E +T+++ + P RLPI DI
Sbjct: 1313 DGCSKKTNEWQKTIIEYKTNKPSRLPILDI 1342
Score = 32.0 bits (71), Expect = 2.0
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 1 KGPVGVNGEPGLMGPIGSTGRDGP 72
KGP G NG G GP+G+ G GP
Sbjct: 742 KGPKGENGPVGPTGPVGAAGPSGP 765
Score = 31.6 bits (70), Expect = 2.6
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 4 GPVGVNGEPGLMGPIGSTGRDG 69
GPVG G PG GP+G G+ G
Sbjct: 953 GPVGAAGAPGPQGPVGPVGKHG 974
Score = 31.2 bits (69), Expect = 3.4
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 1 KGPVGVNGEPGLMGPIGSTGRDGP 72
+GP G GEPG GP G+ G GP
Sbjct: 112 QGPPGEPGEPGQTGPAGARGPPGP 135
Score = 31.2 bits (69), Expect = 3.4
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 1 KGPVGVNGEPGLMGPIGSTGRDGPT 75
+GPVG +GE G GP G G GP+
Sbjct: 823 QGPVGRSGETGASGPPGFVGEKGPS 847
Score = 30.4 bits (67), Expect = 5.7
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 1 KGPVGVNGEPGLMGPIGSTGRDGP 72
+GP G +G G GPIGS G GP
Sbjct: 589 RGPPGESGAAGPTGPIGSRGPSGP 612
Score = 30.0 bits (66), Expect = 7.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 4 GPVGVNGEPGLMGPIGSTGRDGPT 75
GP G GEPG++G G+ G GP+
Sbjct: 614 GPDGNKGEPGVVGAPGTAGPSGPS 637
Score = 30.0 bits (66), Expect = 7.5
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = +1
Query: 4 GPVGVNGEPGLMGPIGSTGRDG 69
G G GE GL G IGS GRDG
Sbjct: 650 GGKGEKGETGLRGDIGSPGRDG 671
Score = 30.0 bits (66), Expect = 7.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 4 GPVGVNGEPGLMGPIGSTGRDGP 72
GP G++G PG GP G G GP
Sbjct: 797 GPSGISGPPGPPGPAGKEGLRGP 819
Score = 29.6 bits (65), Expect = 9.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 1 KGPVGVNGEPGLMGPIGSTGRDGP 72
+G G +G G+MGP GS G GP
Sbjct: 403 RGLPGADGRAGVMGPAGSRGATGP 426
Score = 29.6 bits (65), Expect = 9.8
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 4 GPVGVNGEPGLMGPIGSTGRDGP 72
GP G NG+ G GP G G GP
Sbjct: 683 GPAGANGDRGEAGPAGPAGPAGP 705
Score = 29.6 bits (65), Expect = 9.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 4 GPVGVNGEPGLMGPIGSTGRDG 69
GP+G+ G PG GP G+ G G
Sbjct: 893 GPLGIAGPPGARGPPGNVGNPG 914
>sp||P12105_3 [Segment 3 of 3] Collagen alpha 1(III) chain precursor
Length = 340
Score = 95.9 bits (237), Expect = 1e-19
Identities = 74/279 (26%), Positives = 124/279 (44%), Gaps = 28/279 (10%)
Frame = +1
Query: 4 GPVGVNGEPGLMGPIGSTGRDGPTXXXXXXXXXXXXXXXXXXAMMLPITYDVNRPMYSDD 183
GP G GE G GP G G GP+ + Y+ ++
Sbjct: 43 GPRGNRGESGPAGPPGQPGLPGPSGPPGPCCGGGVASLGAGEKGPVGYGYEYRDEPKENE 102
Query: 184 ANAANILGS--------DTIGQPLGTKESPARSCNHLKSINSDLKDGNYYIDPNGGKTND 339
N I+ S + I P G++++PAR+C LK + +LK G Y+IDPN G D
Sbjct: 103 INLGEIMSSMKSINNQIENILSPDGSRKNPARNCRDLKFCHPELKSGEYWIDPNQGCKMD 162
Query: 340 AFEVFCKMKLGETCISPKQGLFAKTSY--SQDSINQYNSFGES-SGIQRFDY-------T 489
A +V+C M+ GETC+S + ++ ++ S ++ FGES G +F Y
Sbjct: 163 AIKVYCNMETGETCLSANPATVPRKNWWTTESSGKKHVWFGESMKGGFQFSYGDPDLPED 222
Query: 490 IDNNQLMYLKMISSKGYQEVNVVCNNMA---------VVERTEFPAIIFSDNNRELTKDD 642
+ QL +L+++SS+ Q + C N V + + + + +D E +
Sbjct: 223 VSEVQLAFLRILSSRASQNITYHCKNSIAYMNQASGNVKKALKLMSSVETDIKAE---GN 279
Query: 643 HHLNYSIIKDECQNNSSEDSETVLQV-SGDPKRLPIRDI 756
Y++++D C ++ E +TV + + RLP+ DI
Sbjct: 280 SKYMYAVLEDGCTKHTGEWGKTVFEYRTRKTMRLPVVDI 318
>sp|P02457|CA11_CHICK Collagen alpha 1(I) chain precursor
Length = 1453
Score = 95.5 bits (236), Expect = 1e-19
Identities = 79/283 (27%), Positives = 123/283 (43%), Gaps = 32/283 (11%)
Frame = +1
Query: 4 GPVGVNGEPGLMGPIGSTGRDGPTXXXXXXXXXXXXXXXXXXAMMLPITYDVNRPMYSDD 183
GP G G G +GP+G G GP +D R +DD
Sbjct: 1152 GPPGPRGRTGEVGPVGPPGPPGPPGPPGPPSGGFDFSFLPQPPQ--EKAHDGGRYYRADD 1209
Query: 184 ANAA--NILGSDT-----------IGQPLGTKESPARSCNHLKSINSDLKDGNYYIDPNG 324
AN L DT I P GT+++PAR+C LK + D K G Y+IDPN
Sbjct: 1210 ANVMRDRDLEVDTTLKSLSQQIENIRSPEGTRKNPARTCRDLKMCHGDWKSGEYWIDPNQ 1269
Query: 325 GKTNDAFEVFCKMKLGETCISPKQGLFAKTSY---SQDSINQYNSFGE--SSGIQRFDYT 489
G DA +V+C M+ GETC+ P Q A+ ++ ++ FGE S G Q F+Y
Sbjct: 1270 GCNLDAIKVYCNMETGETCVYPTQATIAQKNWYLSKNPKEKKHVWFGETMSDGFQ-FEYG 1328
Query: 490 IDNN-------QLMYLKMISSKGYQEVNVVCNNMAV-----VERTEFPAIIFSDNNREL- 630
+ + QL +L+++S++ Q V C N + ++ N E+
Sbjct: 1329 GEGSNPADVAIQLTFLRLMSTEATQNVTYHCKNSVAYMDHDTGNLKKALLLQGANEIEIR 1388
Query: 631 TKDDHHLNYSIIKDECQNNSSEDSETVLQV-SGDPKRLPIRDI 756
+ + Y + +D C +++ +TV++ + RLPI D+
Sbjct: 1389 AEGNSRFTYGVTEDGCTSHTGAWGKTVIEYKTTKTSRLPIIDL 1431
Score = 32.0 bits (71), Expect = 2.0
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +1
Query: 1 KGPVGVNGEPGLMGPIGSTGRDG 69
+GP G G PGL GP G GR+G
Sbjct: 983 RGPPGPMGPPGLAGPPGEAGREG 1005
Score = 31.6 bits (70), Expect = 2.6
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 4 GPVGVNGEPGLMGPIGSTGRDGP 72
GP G G PG GPIG+ G GP
Sbjct: 918 GPPGEKGSPGADGPIGAPGTPGP 940
Score = 31.2 bits (69), Expect = 3.4
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 1 KGPVGVNGEPGLMGPIGSTGRDGP 72
+GP G GEPG GP+G G GP
Sbjct: 191 QGPPGEPGEPGASGPMGPRGPAGP 214
Score = 30.8 bits (68), Expect = 4.4
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 1 KGPVGVNGEPGLMGPIGSTGRDG 69
KGP G G PG +GP GS G G
Sbjct: 494 KGPPGERGSPGAVGPKGSPGEAG 516
Score = 30.0 bits (66), Expect = 7.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 4 GPVGVNGEPGLMGPIGSTGRDG 69
GP G G PG GP+G G++G
Sbjct: 1032 GPPGAPGAPGAPGPVGPAGKNG 1053
>sp|Q28668|CO1A2_RABIT Collagen alpha 2(I) chain precursor
Length = 526
Score = 95.1 bits (235), Expect = 2e-19
Identities = 70/270 (25%), Positives = 120/270 (44%), Gaps = 19/270 (7%)
Frame = +1
Query: 4 GPVGVNGEPGLMGPIGSTGRDGPTXXXXXXXXXXXXXXXXXXAMM-LPITYDVNRPM-YS 177
GP G+ G G GP G G GP P + RP Y
Sbjct: 235 GPAGLRGSQGSQGPAGPPGPPGPPGPPGASGGGYDFGYDGDFYRADQPRSPPSLRPKDYE 294
Query: 178 DDANAANILGS-DTIGQPLGTKESPARSCNHLKSINSDLKDGNYYIDPNGGKTNDAFEVF 354
DA ++ +T+ P G++++PAR+C L+ + + G Y+IDPN G T DA +V+
Sbjct: 295 VDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVY 354
Query: 355 CKMKLGETCI-SPKQGLFAKTSYSQDSINQYNSFGES-SGIQRFDYTIDN-------NQL 507
C GETCI + + + K Y ++ GE+ +G +F+Y ++ QL
Sbjct: 355 CDFSTGETCIRAQPENISVKNWYKSSKAKKHVWLGETINGGTQFEYNVEGVTSKEMATQL 414
Query: 508 MYLKMISSKGYQEVNVVCNNMAVVERTEF-----PAIIFSDNNRELTKD-DHHLNYSIIK 669
+++++++ Q + C N E I+ N+ EL + + Y+++
Sbjct: 415 AFMRLLANHASQNITYHCKNSIAYMDEETGNLNKAVILQGSNDVELVAEGNSRFTYTVLV 474
Query: 670 DECQNNSSEDSETVLQV-SGDPKRLPIRDI 756
D C ++E +T+++ + P RLP DI
Sbjct: 475 DGCTKKTNEWGKTIIEYKTNKPSRLPFLDI 504
Score = 30.4 bits (67), Expect = 5.7
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 4 GPVGVNGEPGLMGPIGSTGRDG 69
GPVG G PG G +G TG+ G
Sbjct: 115 GPVGAAGAPGPQGSVGPTGKHG 136
Score = 29.6 bits (65), Expect = 9.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 1 KGPVGVNGEPGLMGPIGSTGRDG 69
+GP G G PG+ G G GRDG
Sbjct: 66 RGPPGAVGSPGVNGAPGEAGRDG 88
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.312 0.132 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,912,292
Number of Sequences: 369166
Number of extensions: 1652226
Number of successful extensions: 9994
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9820
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7405750800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)