Planaria EST Database


DrC_01813

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01813
         (764 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P69527|AMPO_RAT  Aminopeptidase O (AP-O)                        36   0.13 
sp|Q57654|Y201_METJA  Hypothetical protein MJ0201                  33   0.85 
sp|Q7HKI3|MATK_ACEOP  Maturase K (Intron maturase) >gi|68052...    31   3.2  
sp|Q9YTU2|POLB_CHPVU  ORFB polyprotein [Contains: Papain-lik...    31   4.2  
sp|O19892|YCF30_CYACA  Putative HTH-type transcriptional reg...    30   5.5  
sp|P29523|PPB_BOMMO  Membrane-bound alkaline phosphatase pre...    30   7.2  
sp|Q9WU00|NRF1_MOUSE  Nuclear respiratory factor 1 (NRF-1) (...    30   9.3  
>sp|P69527|AMPO_RAT Aminopeptidase O (AP-O)
          Length = 816

 Score = 35.8 bits (81), Expect = 0.13
 Identities = 39/165 (23%), Positives = 69/165 (41%), Gaps = 5/165 (3%)
 Frame = +2

Query: 272 LESMLWGLGTAIGELPPYFMARAAALSGSVESNQPQDESAWHRRAQEAMKTIVKRVGFVG 451
           LE + W       +LPP+       L   +  ++ QDE        + ++   ++ G V 
Sbjct: 507 LEDIFWAEAQ---QLPPHEALEQQELRACLRWHRLQDELQNSPEGMQVLRPNKEKTGHVS 563

Query: 452 IVLCASVPNPLFDLAGMTCGHFLVPFSTF-FGATVLGKAVNKMFLQMAFVVF----LFSQ 616
               + V N L    G    H+L  +    F A  LG+     FL+    +F    + SQ
Sbjct: 564 ASGASVVKNGLNPEKGFMQVHYLKGYFLLRFLARTLGEETYFPFLRKFVHLFHGQLILSQ 623

Query: 617 DKVAWLQSCIKNVPRYGQSLNNLIDEFLIQQREKIHKAIVSEKQS 751
           D +  L   I    R+G S+ N++ ++L  +   I KA+  E+++
Sbjct: 624 DFLQMLLESIPENKRFGLSVENIVGDWL--ECPGIPKALQEERKA 666
>sp|Q57654|Y201_METJA Hypothetical protein MJ0201
          Length = 160

 Score = 33.1 bits (74), Expect = 0.85
 Identities = 15/58 (25%), Positives = 31/58 (53%)
 Frame = +2

Query: 428 VKRVGFVGIVLCASVPNPLFDLAGMTCGHFLVPFSTFFGATVLGKAVNKMFLQMAFVV 601
           +K+ G +G+++ +  P P F++    CG F +PF  +  A  L + +    + + FV+
Sbjct: 98  LKKWGILGVIIASFTPIP-FEVICWVCGSFEMPFERYMIAVFLSRLIRHGMVILPFVL 154
>sp|Q7HKI3|MATK_ACEOP Maturase K (Intron maturase)
 sp|Q8SEL8|MATK_ACEMO Maturase K (Intron maturase)
          Length = 514

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -2

Query: 277 FE*NFTNYN*SFHFTLNYPVRTQKLIRIWRFWEIGSSTF 161
           FE NF++ +      + YP+R + L+R +R+W   +S+F
Sbjct: 138 FENNFSHLHYVLDVLIPYPIRPEILVRTFRYWVKDASSF 176
>sp|Q9YTU2|POLB_CHPVU ORFB polyprotein [Contains: Papain-like protease p48 ; Putative
            RNA-directed RNA polymerase/Helicase ]
          Length = 3164

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 6/101 (5%)
 Frame = +2

Query: 287  WGLGTAIGELPPYFMARAAALSGSVESNQPQDESAWHRRAQEAMKTIVKRVGFVGIVLCA 466
            WGL    G    ++    A  S  + S  P+D   W +R    M   +     +G+V   
Sbjct: 2536 WGLSKVYGLANTFYWHGKARSSREISSIMPRDPYMWSKRFVSTMADFIPERFALGLVPAT 2595

Query: 467  SVPNPLFDLAGMTCGHF------LVPFSTFFGATVLGKAVN 571
             + + L ++  +  G        L    T FG    GK++N
Sbjct: 2596 LILDGLAEIIEVLFGRMWRMFANLKSVGTDFGDARSGKSLN 2636
>sp|O19892|YCF30_CYACA Putative HTH-type transcriptional regulator ycf30
          Length = 317

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
 Frame = +2

Query: 395 HRRAQ--EAMKTIVKRVGFVGIVLCASVPNPLFDLAGMTCGHFLVPFSTFFGATVLGKAV 568
           HR AQ  EA + ++K  G + + LC      L DL  + CG+ ++  S   G  ++ K +
Sbjct: 57  HRNAQLTEAGQLLLKYGGRI-LALCEETCRALEDLQNLQCGNLIIGASQTTGTYLMPKLI 115

Query: 569 ---NKMFLQMAFVVFLFSQDKVAW 631
               + + Q++  + + S  +++W
Sbjct: 116 GLFRQKYPQISVQLQVHSTRRISW 139
>sp|P29523|PPB_BOMMO Membrane-bound alkaline phosphatase precursor (M-ALP)
          Length = 547

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = +2

Query: 290 GLGTAIGELPPYFMARAAALSGSVESNQPQDESAWHRRAQEAMK 421
           G G   G LPP   ARA   S +  S    + S W R AQEA++
Sbjct: 13  GAGEGRGPLPPG-AARAGEASAATRSAAESEASFWVREAQEAIE 55
>sp|Q9WU00|NRF1_MOUSE Nuclear respiratory factor 1 (NRF-1) (Alpha palindromic binding
           protein) (Alpha-pal)
          Length = 503

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 13/73 (17%)
 Frame = +2

Query: 320 PYFMARAAALSGSVESNQP-----------QDESAWHRRAQEAMKTIVKRVGFVGIVLC- 463
           P  MA AAA++   + N+P           + ++   R+ +  +     RVG   IVLC 
Sbjct: 76  PVGMAAAAAVATGKKRNRPHVFESNPSIRKRQQTRLLRKLRATLDEYTTRVGQQAIVLCI 135

Query: 464 -ASVPNPLFDLAG 499
             S PNP+F + G
Sbjct: 136 SPSKPNPVFKVFG 148
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,836,178
Number of Sequences: 369166
Number of extensions: 2070246
Number of successful extensions: 6281
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6281
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7066925600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)