Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_K10
(764 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P69527|AMPO_RAT Aminopeptidase O (AP-O) 36 0.13
sp|Q57654|Y201_METJA Hypothetical protein MJ0201 33 0.85
sp|Q7HKI3|MATK_ACEOP Maturase K (Intron maturase) >gi|68052... 31 3.2
sp|Q9YTU2|POLB_CHPVU ORFB polyprotein [Contains: Papain-lik... 31 4.2
sp|O19892|YCF30_CYACA Putative HTH-type transcriptional reg... 30 5.5
sp|P29523|PPB_BOMMO Membrane-bound alkaline phosphatase pre... 30 7.2
sp|Q9WU00|NRF1_MOUSE Nuclear respiratory factor 1 (NRF-1) (... 30 9.3
>sp|P69527|AMPO_RAT Aminopeptidase O (AP-O)
Length = 816
Score = 35.8 bits (81), Expect = 0.13
Identities = 39/165 (23%), Positives = 69/165 (41%), Gaps = 5/165 (3%)
Frame = +2
Query: 272 LESMLWGLGTAIGELPPYFMARAAALSGSVESNQPQDESAWHRRAQEAMKTIVKRVGFVG 451
LE + W +LPP+ L + ++ QDE + ++ ++ G V
Sbjct: 507 LEDIFWAEAQ---QLPPHEALEQQELRACLRWHRLQDELQNSPEGMQVLRPNKEKTGHVS 563
Query: 452 IVLCASVPNPLFDLAGMTCGHFLVPFSTF-FGATVLGKAVNKMFLQMAFVVF----LFSQ 616
+ V N L G H+L + F A LG+ FL+ +F + SQ
Sbjct: 564 ASGASVVKNGLNPEKGFMQVHYLKGYFLLRFLARTLGEETYFPFLRKFVHLFHGQLILSQ 623
Query: 617 DKVAWLQSCIKNVPRYGQSLNNLIDEFLIQQREKIHKAIVSEKQS 751
D + L I R+G S+ N++ ++L + I KA+ E+++
Sbjct: 624 DFLQMLLESIPENKRFGLSVENIVGDWL--ECPGIPKALQEERKA 666
>sp|Q57654|Y201_METJA Hypothetical protein MJ0201
Length = 160
Score = 33.1 bits (74), Expect = 0.85
Identities = 15/58 (25%), Positives = 31/58 (53%)
Frame = +2
Query: 428 VKRVGFVGIVLCASVPNPLFDLAGMTCGHFLVPFSTFFGATVLGKAVNKMFLQMAFVV 601
+K+ G +G+++ + P P F++ CG F +PF + A L + + + + FV+
Sbjct: 98 LKKWGILGVIIASFTPIP-FEVICWVCGSFEMPFERYMIAVFLSRLIRHGMVILPFVL 154
>sp|Q7HKI3|MATK_ACEOP Maturase K (Intron maturase)
sp|Q8SEL8|MATK_ACEMO Maturase K (Intron maturase)
Length = 514
Score = 31.2 bits (69), Expect = 3.2
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = -2
Query: 277 FE*NFTNYN*SFHFTLNYPVRTQKLIRIWRFWEIGSSTF 161
FE NF++ + + YP+R + L+R +R+W +S+F
Sbjct: 138 FENNFSHLHYVLDVLIPYPIRPEILVRTFRYWVKDASSF 176
>sp|Q9YTU2|POLB_CHPVU ORFB polyprotein [Contains: Papain-like protease p48 ; Putative
RNA-directed RNA polymerase/Helicase ]
Length = 3164
Score = 30.8 bits (68), Expect = 4.2
Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 6/101 (5%)
Frame = +2
Query: 287 WGLGTAIGELPPYFMARAAALSGSVESNQPQDESAWHRRAQEAMKTIVKRVGFVGIVLCA 466
WGL G ++ A S + S P+D W +R M + +G+V
Sbjct: 2536 WGLSKVYGLANTFYWHGKARSSREISSIMPRDPYMWSKRFVSTMADFIPERFALGLVPAT 2595
Query: 467 SVPNPLFDLAGMTCGHF------LVPFSTFFGATVLGKAVN 571
+ + L ++ + G L T FG GK++N
Sbjct: 2596 LILDGLAEIIEVLFGRMWRMFANLKSVGTDFGDARSGKSLN 2636
>sp|O19892|YCF30_CYACA Putative HTH-type transcriptional regulator ycf30
Length = 317
Score = 30.4 bits (67), Expect = 5.5
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Frame = +2
Query: 395 HRRAQ--EAMKTIVKRVGFVGIVLCASVPNPLFDLAGMTCGHFLVPFSTFFGATVLGKAV 568
HR AQ EA + ++K G + + LC L DL + CG+ ++ S G ++ K +
Sbjct: 57 HRNAQLTEAGQLLLKYGGRI-LALCEETCRALEDLQNLQCGNLIIGASQTTGTYLMPKLI 115
Query: 569 ---NKMFLQMAFVVFLFSQDKVAW 631
+ + Q++ + + S +++W
Sbjct: 116 GLFRQKYPQISVQLQVHSTRRISW 139
>sp|P29523|PPB_BOMMO Membrane-bound alkaline phosphatase precursor (M-ALP)
Length = 547
Score = 30.0 bits (66), Expect = 7.2
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +2
Query: 290 GLGTAIGELPPYFMARAAALSGSVESNQPQDESAWHRRAQEAMK 421
G G G LPP ARA S + S + S W R AQEA++
Sbjct: 13 GAGEGRGPLPPG-AARAGEASAATRSAAESEASFWVREAQEAIE 55
>sp|Q9WU00|NRF1_MOUSE Nuclear respiratory factor 1 (NRF-1) (Alpha palindromic binding
protein) (Alpha-pal)
Length = 503
Score = 29.6 bits (65), Expect = 9.3
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 13/73 (17%)
Frame = +2
Query: 320 PYFMARAAALSGSVESNQP-----------QDESAWHRRAQEAMKTIVKRVGFVGIVLC- 463
P MA AAA++ + N+P + ++ R+ + + RVG IVLC
Sbjct: 76 PVGMAAAAAVATGKKRNRPHVFESNPSIRKRQQTRLLRKLRATLDEYTTRVGQQAIVLCI 135
Query: 464 -ASVPNPLFDLAG 499
S PNP+F + G
Sbjct: 136 SPSKPNPVFKVFG 148
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,836,178
Number of Sequences: 369166
Number of extensions: 2070246
Number of successful extensions: 6281
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6281
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7066925600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)