Planaria EST Database


DrC_01812

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01812
         (383 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Y4K3|TRAF6_HUMAN  TNF receptor-associated factor 6 (Int...    50   2e-06
sp|P70196|TRAF6_MOUSE  TNF receptor-associated factor 6            50   2e-06
sp|Q61382|TRAF4_MOUSE  TNF receptor-associated factor 4 (Cys...    45   4e-05
sp|Q9BUZ4|TRAF4_HUMAN  TNF receptor-associated factor 4 (Cys...    44   1e-04
sp|P39428|TRAF1_MOUSE  TNF receptor-associated factor 1            40   0.002
sp|Q13077|TRAF1_HUMAN  TNF receptor-associated factor 1 (Eps...    40   0.002
sp|Q12933|TRAF2_HUMAN  TNF receptor-associated factor 2 (Tum...    37   0.018
sp|O00463|TRAF5_HUMAN  TNF receptor-associated factor 5 (RIN...    35   0.053
sp|P39429|TRAF2_MOUSE  TNF receptor-associated factor 2            35   0.069
sp|Q13114|TRAF3_HUMAN  TNF receptor-associated factor 3 (CD4...    33   0.26 
>sp|Q9Y4K3|TRAF6_HUMAN TNF receptor-associated factor 6 (Interleukin 1 signal transducer)
           (RING finger protein 85)
          Length = 522

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
 Frame = +1

Query: 40  SPAFYTHENGYRIQMRL-LPVYERARCSG-VMIYPNCIQGNYDGYLDWPLEAEISISVVD 213
           SP FYT + GY++ MRL L +    RC+  + ++ + +QG YD +L WP +  I ++++D
Sbjct: 377 SPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILD 436

Query: 214 Q 216
           Q
Sbjct: 437 Q 437
>sp|P70196|TRAF6_MOUSE TNF receptor-associated factor 6
          Length = 530

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
 Frame = +1

Query: 19  KRKSFYESPAFYTHENGYRIQMRL-LPVYERARCSG-VMIYPNCIQGNYDGYLDWPLEAE 192
           +R     SP FYT   GY++ MRL L +    RC+  + ++ + +QG YD +L WP +  
Sbjct: 378 ERPVVIHSPGFYTGRPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGT 437

Query: 193 ISISVVDQ 216
           I ++++DQ
Sbjct: 438 IRLTILDQ 445
>sp|Q61382|TRAF4_MOUSE TNF receptor-associated factor 4 (Cysteine-rich motif associated to
           RING and Traf domains protein 1)
          Length = 470

 Score = 45.4 bits (106), Expect = 4e-05
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
 Frame = +1

Query: 40  SPAFYTHENGYRIQMRL-LPVYERARCSGVMIYPNCIQGNYDGYLDWPLEAEISISVVDQ 216
           SPAFYTH+ GY++Q+   L        + + IY   + G +D  L+WPL   ++ S++DQ
Sbjct: 334 SPAFYTHKYGYKLQVSASLNGNGSGEGTHLSIYIRVLPGAFDNLLEWPLARRVTFSLLDQ 393
>sp|Q9BUZ4|TRAF4_HUMAN TNF receptor-associated factor 4 (Cysteine-rich domain associated
           with RING and Traf domains protein 1) (Malignant 62)
           (RING finger protein 83)
          Length = 470

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
 Frame = +1

Query: 40  SPAFYTHENGYRIQM-RLLPVYERARCSGVMIYPNCIQGNYDGYLDWPLEAEISISVVDQ 216
           SPAFYTH+ GY++Q+   L        + + +Y   + G +D  L+WP    ++ S++DQ
Sbjct: 334 SPAFYTHKYGYKLQVSAFLNGNGSGEGTHLSLYIRVLPGAFDNLLEWPFARRVTFSLLDQ 393
>sp|P39428|TRAF1_MOUSE TNF receptor-associated factor 1
          Length = 409

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
 Frame = +1

Query: 13  CNKRKSFYESPAFYTHENGYRIQMRLLPVYERARCSG----VMIYPNCIQGNYDGYLDWP 180
           C +  S + SPAFYT + GY++ +RL   Y     SG    + ++   ++G YD  L WP
Sbjct: 278 CGRTVSLF-SPAFYTAKYGYKLCLRL---YLNGDGSGKKTHLSLFIVIMRGEYDALLPWP 333

Query: 181 LEAEISISVVDQ 216
              +++  ++DQ
Sbjct: 334 FRNKVTFMLLDQ 345
>sp|Q13077|TRAF1_HUMAN TNF receptor-associated factor 1 (Epstein-Barr virus-induced
           protein 6)
          Length = 416

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
 Frame = +1

Query: 13  CNKRKSFYESPAFYTHENGYRIQMRL-LPVYERARCSGVMIYPNCIQGNYDGYLDWPLEA 189
           C +  S + SPAFYT + GY++ +RL L      + + + ++   ++G YD  L WP   
Sbjct: 285 CGRTVSLF-SPAFYTAKYGYKLCLRLYLNGDGTGKRTHLSLFIVIMRGEYDALLPWPFRN 343

Query: 190 EISISVVDQ 216
           +++  ++DQ
Sbjct: 344 KVTFMLLDQ 352
>sp|Q12933|TRAF2_HUMAN TNF receptor-associated factor 2 (Tumor necrosis factor type 2
           receptor-associated protein 3)
          Length = 501

 Score = 36.6 bits (83), Expect = 0.018
 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
 Frame = +1

Query: 1   ISEFCNKRKSFYE-------SPAFYTHENGYRIQMRL-LPVYERARCSGVMIYPNCIQGN 156
           IS+F  KR+           SPAFYT   GY++ +R+ L      R + + ++   ++G 
Sbjct: 358 ISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGP 417

Query: 157 YDGYLDWPLEAEISISVVDQ 216
            D  L WP   ++++ ++DQ
Sbjct: 418 NDALLRWPFNQKVTLMLLDQ 437
>sp|O00463|TRAF5_HUMAN TNF receptor-associated factor 5 (RING finger protein 84)
          Length = 557

 Score = 35.0 bits (79), Expect = 0.053
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +1

Query: 40  SPAFYTHENGYRIQMRL-LPVYERARCSGVMIYPNCIQGNYDGYLDWPLEAEISISVVDQ 216
           S +FYT   GYR+  R  L      R S + +Y   ++G +D  L WP    +++ ++DQ
Sbjct: 430 SQSFYTSRCGYRLCARAYLNGDGSGRGSHLSLYFVVMRGEFDSLLQWPFRQRVTLMLLDQ 489
>sp|P39429|TRAF2_MOUSE TNF receptor-associated factor 2
          Length = 501

 Score = 34.7 bits (78), Expect = 0.069
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
 Frame = +1

Query: 1   ISEFCNKRKSFYE-------SPAFYTHENGYRIQMRL-LPVYERARCSGVMIYPNCIQGN 156
           IS+F  KR+           SPAFYT   GY++ +R+ L      R + + ++   ++G 
Sbjct: 358 ISDFTRKRQEAVAGRTPAIFSPAFYTSRYGYKMCLRVYLNGDGTGRGTHLSLFFVVMKGP 417

Query: 157 YDGYLDWPLEAEISISVVD 213
            D  L WP   ++++ ++D
Sbjct: 418 NDALLQWPFNQKVTLMLLD 436
>sp|Q13114|TRAF3_HUMAN TNF receptor-associated factor 3 (CD40 receptor associated factor
           1) (CRAF1) (CD40 binding protein) (CD40BP) (LMP1
           associated protein) (LAP1) (CAP-1)
          Length = 568

 Score = 32.7 bits (73), Expect = 0.26
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = +1

Query: 19  KRKSFYESPAFYTHENGYRIQMRL-LPVYERARCSGVMIYPNCIQGNYDGYLDWPLEAEI 195
           K  S Y  P FYT   GY++  R+ L      + + + ++   ++G YD  L WP + ++
Sbjct: 436 KTLSLYSQP-FYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKV 494

Query: 196 SISVVDQ 216
           ++ ++DQ
Sbjct: 495 TLMLMDQ 501
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,775,201
Number of Sequences: 369166
Number of extensions: 867605
Number of successful extensions: 2130
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2123
length of database: 68,354,980
effective HSP length: 94
effective length of database: 50,989,890
effective search space used: 1682666370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)