Planaria EST Database


DrC_01803

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01803
         (818 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9H7E2|TDRD3_HUMAN  Tudor domain-containing protein 3           86   2e-16
sp|Q91W18|TDRD3_MOUSE  Tudor domain-containing protein 3           80   5e-15
sp|P22682|CBL_MOUSE  CBL E3 ubiquitin protein ligase (Signal...    34   0.55 
sp|Q90374|PRLR_COLLI  Prolactin receptor precursor (PRL-R)         33   0.72 
sp|O00443|P3C2A_HUMAN  Phosphatidylinositol-4-phosphate 3-ki...    32   2.1  
sp|Q5RAY1|P3C2A_PONPY  Phosphatidylinositol-4-phosphate 3-ki...    32   2.1  
sp|Q10256|MUD1_SCHPO  UBA-domain protein mud1 (UBA-domain co...    32   2.7  
sp|Q61194|P3C2A_MOUSE  Phosphatidylinositol-4-phosphate 3-ki...    32   2.7  
sp|Q10255|YD27_SCHPO  Hypothetical protein C56F8.07 in chrom...    32   2.7  
sp|P04821|CDC25_YEAST  Cell division control protein 25            31   3.6  
>sp|Q9H7E2|TDRD3_HUMAN Tudor domain-containing protein 3
          Length = 651

 Score = 85.5 bits (210), Expect = 2e-16
 Identities = 70/234 (29%), Positives = 115/234 (49%), Gaps = 19/234 (8%)
 Frame = +1

Query: 22  LLKYTITDGVSTIHLLDLQSNPKLNRNNEPGCKVIIKGQTMYKSGMIILIDKINVTCLGG 201
           +L+  +TDG  +   ++     K++ N  PG KV + G    K+G ++L D  N T LGG
Sbjct: 1   MLRLQMTDGHISCTAVEFSYMSKISLNTPPGTKVKLSGIVDIKNGFLLLNDS-NTTVLGG 59

Query: 202 KVIDLIRAENIDKT-SKMNRIGLHGTSQGPPKFTPFGNK----LNINMQDIRKFKAMQTE 366
           +V  LI    + ++ SK NR  + GT  GPP F PFG K    + ++ +++ + K +Q  
Sbjct: 60  EVEHLIEKWELQRSLSKHNRSNI-GTEGGPPPFVPFGQKCVSHVQVDSRELDRRKTLQV- 117

Query: 367 TTKENVISDNSEFGDKREAALAEVRKTKDGDT--SAVTDKHSLLDKFHGGGTSKFI--KE 534
           T      +DN EF  +R AA+AEV K+K+  T         S L+    G  ++ +  KE
Sbjct: 118 TMPVKPTNDNDEFEKQRTAAIAEVAKSKETKTFGGGGGGARSNLNMNAAGNRNREVLQKE 177

Query: 535 STEKQDQKDSNV----------AYLMSSGFNFTEVQKALKASNNDVNVALDQLL 666
            + K + K   V           ++   GF+    ++AL  + N++  AL+ LL
Sbjct: 178 KSTKSEGKHEGVYRELVDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLL 231
>sp|Q91W18|TDRD3_MOUSE Tudor domain-containing protein 3
          Length = 650

 Score = 80.5 bits (197), Expect = 5e-15
 Identities = 69/234 (29%), Positives = 113/234 (48%), Gaps = 19/234 (8%)
 Frame = +1

Query: 22  LLKYTITDGVSTIHLLDLQSNPKLNRNNEPGCKVIIKGQTMYKSGMIILIDKINVTCLGG 201
           +L+  +TDG ++   ++     K++ N  PG KV + G    K+G ++L D  N T LGG
Sbjct: 1   MLRVQMTDGHTSCTAVEFSYISKISLNTPPGTKVKLSGTVDIKNGFLLLSDS-NTTVLGG 59

Query: 202 KVIDLIRAENIDKT-SKMNRIGLHGTSQGPPKFTPFGNKLNINMQ----DIRKFKAMQTE 366
           +V  LI    + ++  K NR  + G   GPP F PFG K   N+Q    ++ + K +Q  
Sbjct: 60  EVEHLIDKWALQRSLLKHNRSNI-GAEGGPPPFLPFGQKCASNVQVDSRELDRRKTLQVS 118

Query: 367 TTKENVISDNSEFGDKREAALAEVRKTKDGDT--SAVTDKHSLLDKFHGGGTSKFI--KE 534
              +   +DN EF  +R AA+AEV K+K+  T         S L+    G  ++ +  KE
Sbjct: 119 LPAKPA-NDNDEFEKQRTAAIAEVAKSKETKTFGGGGGGARSNLNIGAAGHRNREVLQKE 177

Query: 535 STEKQDQKDSNV----------AYLMSSGFNFTEVQKALKASNNDVNVALDQLL 666
              K + K+  V           ++   GF+    ++AL  + N++  AL+ LL
Sbjct: 178 KASKSESKNEGVYRELVDEKALKHITEMGFSKEASRQALMDNANNLEAALNVLL 231
>sp|P22682|CBL_MOUSE CBL E3 ubiquitin protein ligase (Signal transduction protein CBL)
           (Proto-oncogene c-CBL) (Casitas B-lineage lymphoma
           proto-oncogene)
          Length = 913

 Score = 33.9 bits (76), Expect = 0.55
 Identities = 16/49 (32%), Positives = 30/49 (61%)
 Frame = +1

Query: 505 GGGTSKFIKESTEKQDQKDSNVAYLMSSGFNFTEVQKALKASNNDVNVA 651
           GG T+  +  +T    Q  S +  LMS G+++ ++QKAL  ++N++ +A
Sbjct: 849 GGATANPV--ATAPSPQLSSEIERLMSQGYSYQDIQKALVIAHNNIEMA 895
>sp|Q90374|PRLR_COLLI Prolactin receptor precursor (PRL-R)
          Length = 830

 Score = 33.5 bits (75), Expect = 0.72
 Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 10/111 (9%)
 Frame = +1

Query: 280 QGPPKFTPFGNKLNINMQDIRKFKAMQTET------TKENVISDNSEFGDKREAALAEVR 441
           Q  P++ P    ++ NM+  R+ + + ++T       K+N  +D S F   +     EV 
Sbjct: 663 QHQPQY-PITETVHDNMEKHREVENLYSKTDQTTVQVKQNRPNDKSPFSKPKLMDYVEVH 721

Query: 442 KTKDGDTSAVTDKH----SLLDKFHGGGTSKFIKESTEKQDQKDSNVAYLM 582
           K +  + +AV  KH      ++K+   GTS   KE T+     D N+  LM
Sbjct: 722 KVRQDEVAAVLLKHKENSGKIEKYTVPGTS---KEYTKVSTVVDHNILVLM 769
>sp|O00443|P3C2A_HUMAN Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha
            polypeptide (Phosphoinositide 3-Kinase-C2-alpha)
            (PtdIns-3-kinase C2 alpha) (PI3K-C2alpha)
          Length = 1686

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = -2

Query: 703  FRIYLN---VNLLFSEAIGPMQHSHRYYWLLR 617
            + IYLN   V  L S A+G +Q +H  YWLL+
Sbjct: 984  YEIYLNSSLVQFLLSRALGNIQIAHNLYWLLK 1015
>sp|Q5RAY1|P3C2A_PONPY Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha
            polypeptide (Phosphoinositide 3-Kinase-C2-alpha)
            (PtdIns-3-kinase C2 alpha) (PI3K-C2alpha)
          Length = 1685

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = -2

Query: 703  FRIYLN---VNLLFSEAIGPMQHSHRYYWLLR 617
            + IYLN   V  L S A+G +Q +H  YWLL+
Sbjct: 982  YEIYLNSSLVQFLLSRALGNIQIAHNLYWLLK 1013
>sp|Q10256|MUD1_SCHPO UBA-domain protein mud1 (UBA-domain containing protein 1)
           (DNA-damage inducible protein DDI1 homolog)
          Length = 332

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 16/36 (44%), Positives = 24/36 (66%)
 Frame = +1

Query: 559 DSNVAYLMSSGFNFTEVQKALKASNNDVNVALDQLL 666
           +S +A L+S GF+  E  +AL A+N D++VA   LL
Sbjct: 297 NSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL 332
>sp|Q61194|P3C2A_MOUSE Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha
            polypeptide (Phosphoinositide 3-Kinase-C2-alpha)
            (PtdIns-3-kinase C2 alpha) (PI3K-C2alpha) (Cpk-m) (p170)
          Length = 1686

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = -2

Query: 703  FRIYLN---VNLLFSEAIGPMQHSHRYYWLLR 617
            + IYLN   V  L S A+G +Q +H  YWLL+
Sbjct: 984  YEIYLNSSLVRFLLSRALGNIQIAHSLYWLLK 1015
>sp|Q10255|YD27_SCHPO Hypothetical protein C56F8.07 in chromosome I
          Length = 507

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 16/36 (44%), Positives = 24/36 (66%)
 Frame = +1

Query: 559 DSNVAYLMSSGFNFTEVQKALKASNNDVNVALDQLL 666
           +S +A L+S GF+  E  +AL A+N D++VA   LL
Sbjct: 472 NSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL 507
>sp|P04821|CDC25_YEAST Cell division control protein 25
          Length = 1589

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
 Frame = +1

Query: 289 PKFTPFGNKLNINMQDIRKFKAMQTETTKENVISDNSEFGDKREAALAEVRKTK--DGDT 462
           PKF P  + +N+  +D+RK   ++  +T+    S  SE    R + L E + +K  DG+ 
Sbjct: 339 PKFPPNDHLVNLYTRDLRKNANIEDSSTR----SKQSESEQNRSSLLMEKQDSKETDGNN 394

Query: 463 SAVTD 477
           +++ D
Sbjct: 395 NSIND 399
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.317    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,651,260
Number of Sequences: 369166
Number of extensions: 1588532
Number of successful extensions: 4031
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4027
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7859674995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)