Planaria EST Database


DrC_01802

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01802
         (731 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Y4K3|TRAF6_HUMAN  TNF receptor-associated factor 6 (Int...    54   4e-07
sp|O00463|TRAF5_HUMAN  TNF receptor-associated factor 5 (RIN...    51   3e-06
sp|P70196|TRAF6_MOUSE  TNF receptor-associated factor 6            51   3e-06
sp|P70191|TRAF5_MOUSE  TNF receptor-associated factor 5            47   4e-05
sp|Q60803|TRAF3_MOUSE  TNF receptor-associated factor 3 (CD4...    38   0.024
sp|O70263|LNX1_MOUSE  Ubiquitin ligase LNX (Numb-binding pro...    37   0.041
sp|Q8TBB1|LNX1_HUMAN  Ubiquitin ligase LNX (Numb-binding pro...    37   0.054
sp|Q8N448|LNX2_HUMAN  Ligand of Numb-protein X 2 (Numb-bindi...    37   0.054
sp|Q96PU4|UHRF2_HUMAN  Ubiquitin-like containing PHD and RIN...    37   0.071
sp|Q9BRZ2|TRI56_HUMAN  Tripartite motif protein 56 (RING fin...    37   0.071
>sp|Q9Y4K3|TRAF6_HUMAN TNF receptor-associated factor 6 (Interleukin 1 signal transducer)
           (RING finger protein 85)
          Length = 522

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 1/125 (0%)
 Frame = +3

Query: 42  MSENFERLLKEYKFEIEN-INDDYKCVICKEILINAHSGPCHCNYCYDCLIKFLHGTEKR 218
           +S +F   ++ Y  E +  +   Y+C IC   L  A   PC   +C  C+IK +     +
Sbjct: 45  LSSSFMEEIQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHK 104

Query: 219 CPGNSNACKRVXXXXXXXXXXXXXXXEKISKLIVNCPIENCLFKDEVSKIDSHIRVCIFQ 398
           CP ++                      +I  L+V CP E CL K E+  ++ H   C F 
Sbjct: 105 CPVDNE------ILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHCEFA 158

Query: 399 QIYCP 413
            + CP
Sbjct: 159 LMDCP 163
>sp|O00463|TRAF5_HUMAN TNF receptor-associated factor 5 (RING finger protein 84)
          Length = 557

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 2/136 (1%)
 Frame = +3

Query: 72  EYKFEIENINDDYKCVICKEILINAHSGPCHCNYCYDCLIKFLH-GTEKRCPGNSNACKR 248
           EY+F +E + + YKC  C  +L N H   C   +C  C++      T   CP +    K 
Sbjct: 32  EYQF-VERLEERYKCAFCHSVLHNPHQTGCGHRFCQHCILSLRELNTVPICPVDKEVIK- 89

Query: 249 VXXXXXXXXXXXXXXXEKISKLIVNCP-IENCLFKDEVSKIDSHIRVCIFQQIYCPYQNI 425
                            ++  L V C     C  K  + +   H++ C+FQ + C   N 
Sbjct: 90  -----SQEVFKDNCCKREVLNLYVYCSNAPGCNAKVILGRYQDHLQQCLFQPVQC--SNE 142

Query: 426 GCRQIDLLKNEMTNHL 473
            CR+  +L+ ++  HL
Sbjct: 143 KCRE-PVLRKDLKEHL 157

 Score = 33.1 bits (74), Expect = 0.78
 Identities = 20/65 (30%), Positives = 32/65 (49%)
 Frame = +3

Query: 318 VNCPIENCLFKDEVSKIDSHIRVCIFQQIYCPYQNIGCRQIDLLKNEMTNHLLINIVPHS 497
           V CP  NC      +++D H+ VC   +  CP+++ GC   D  +N +  H    +  H 
Sbjct: 193 VFCP-NNCAKIILKTEVDEHLAVCPEAEQDCPFKHYGCAVTDKRRN-LQQHEHSALREHM 250

Query: 498 NLLLE 512
            L+LE
Sbjct: 251 RLVLE 255
>sp|P70196|TRAF6_MOUSE TNF receptor-associated factor 6
          Length = 530

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 1/125 (0%)
 Frame = +3

Query: 42  MSENFERLLKEYKFEIEN-INDDYKCVICKEILINAHSGPCHCNYCYDCLIKFLHGTEKR 218
           +S +F   ++ Y  E +  +   Y+C IC   L  A   PC   +C  C+IK +     +
Sbjct: 45  LSSSFMEEIQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHK 104

Query: 219 CPGNSNACKRVXXXXXXXXXXXXXXXEKISKLIVNCPIENCLFKDEVSKIDSHIRVCIFQ 398
           CP ++                      +I  L V CP + CL K E+  ++ H   C F 
Sbjct: 105 CPVDNE------ILLENQLFPDNFAKREILSLTVKCPNKGCLQKMELRHLEDHQVHCEFA 158

Query: 399 QIYCP 413
            + CP
Sbjct: 159 LVNCP 163
>sp|P70191|TRAF5_MOUSE TNF receptor-associated factor 5
          Length = 558

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 2/136 (1%)
 Frame = +3

Query: 72  EYKFEIENINDDYKCVICKEILINAHSGPCHCNYCYDCLIKFLH-GTEKRCPGNSNACKR 248
           EY+F +E + + YKC  C  +L N H   C   +C  C+       +   CP +    K 
Sbjct: 32  EYQF-VEQLEERYKCAFCHSVLHNPHQTGCGHRFCQQCIRSLRELNSVPICPVDKEVIK- 89

Query: 249 VXXXXXXXXXXXXXXXEKISKLIVNCP-IENCLFKDEVSKIDSHIRVCIFQQIYCPYQNI 425
                            ++  L V C     C  +  + +   H++ C FQ + CP  N 
Sbjct: 90  -----PQEVFKDNCCKREVLNLHVYCKNAPGCNARIILGRFQDHLQHCSFQAVPCP--NE 142

Query: 426 GCRQIDLLKNEMTNHL 473
            CR+  +L+ ++  HL
Sbjct: 143 SCREA-MLRKDVKEHL 157

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 16/61 (26%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
 Frame = +3

Query: 318 VNCPIENCLFKDEVSKIDSHIRVCIFQQIYCPYQNIGC----RQIDLLKNE---MTNHLL 476
           V+CP   C+     ++++ H+ VC   +  CP+++ GC    ++ +LL++E   + +H+L
Sbjct: 193 VSCP-NRCVQTIPRARVNEHLTVCPEAEQDCPFKHYGCTVKGKRGNLLEHERAALQDHML 251

Query: 477 I 479
           +
Sbjct: 252 L 252
>sp|Q60803|TRAF3_MOUSE TNF receptor-associated factor 3 (CD40 receptor associated factor
           1) (CRAF1) (TRAFAMN)
          Length = 567

 Score = 38.1 bits (87), Expect = 0.024
 Identities = 29/134 (21%), Positives = 49/134 (36%), Gaps = 1/134 (0%)
 Frame = +3

Query: 87  IENINDDYKCVICKEILINAHSGPCHCNYCYDCLIKFLHGTEKRCPGNSNACKRVXXXXX 266
           ++ + D YKC  C+ +L N     C   +C  C+   L  +  +C     AC        
Sbjct: 43  VKTVEDKYKCEKCRLVLCNPKQTECGHRFCESCMAALLSSSSPKC----TAC-------- 90

Query: 267 XXXXXXXXXXEKISKLIVNCPIENCLFKDEVSKIDSHIRVCIFQQIYCPYQNIGC-RQID 443
                                 +  + KD+V K +   R  +  Q+YC  +  GC  Q+ 
Sbjct: 91  ----------------------QESIIKDKVFKDNCCKREILALQVYCRNEGRGCAEQLT 128

Query: 444 LLKNEMTNHLLINI 485
           L       HLL+++
Sbjct: 129 L------GHLLVHL 136

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 17/76 (22%), Positives = 36/76 (47%)
 Frame = +3

Query: 312 LIVNCPIENCLFKDEVSKIDSHIRVCIFQQIYCPYQNIGCRQIDLLKNEMTNHLLINIVP 491
           ++V+CP +  +     S++ +H+  C+     C ++  GC        ++  H   + V 
Sbjct: 199 VVVSCPHKCSVQTLLRSELSAHLSECVNAPSTCSFKRYGC-VFQGTNQQIKAHEASSAVQ 257

Query: 492 HSNLLLEFLENIKNDV 539
           H NLL E+  +++  V
Sbjct: 258 HVNLLKEWSNSLEKKV 273
>sp|O70263|LNX1_MOUSE Ubiquitin ligase LNX (Numb-binding protein 1) (Ligand of
           Numb-binding protein 1) (Ligand of Numb-protein X 1)
          Length = 728

 Score = 37.4 bits (85), Expect = 0.041
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
 Frame = +3

Query: 90  ENINDDYKCVICKEILINAHSGPCHCNYCYDCLIKFLHGTEKR-CPGNSNACKRVXXXXX 266
           E+++DD  C IC + L++    PC   YC  CL  FL   EK  CP       R      
Sbjct: 37  EDVDDDLICHICLQALLDPLDTPCGHTYCTLCLTNFL--VEKDFCP-----VDRKPVVLQ 89

Query: 267 XXXXXXXXXXEKISKLIVNCPI-ENC 341
                     + ++KL+V CP  E+C
Sbjct: 90  HCKKSSILVNKLLNKLLVTCPFTEHC 115
>sp|Q8TBB1|LNX1_HUMAN Ubiquitin ligase LNX (Numb-binding protein 1) (Ligand of
           Numb-protein X 1)
          Length = 728

 Score = 37.0 bits (84), Expect = 0.054
 Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
 Frame = +3

Query: 90  ENINDDYKCVICKEILINAHSGPCHCNYCYDCLIKFLHGTEKR-CPGNSNACKRVXXXXX 266
           E ++DD  C IC + L++    PC   YC  CL  FL   EK  CP       R      
Sbjct: 33  EEVDDDLICHICLQALLDPLDTPCGHTYCTLCLTNFL--VEKDFCP-----MDRKPLVLQ 85

Query: 267 XXXXXXXXXXEKISKLIVNCPI-ENC 341
                     + ++KL+V CP  E+C
Sbjct: 86  HCKKSSILVNKLLNKLLVTCPFREHC 111
>sp|Q8N448|LNX2_HUMAN Ligand of Numb-protein X 2 (Numb-binding protein 2) (PDZ
           domain-containing RING finger protein 1)
          Length = 690

 Score = 37.0 bits (84), Expect = 0.054
 Identities = 27/99 (27%), Positives = 42/99 (42%)
 Frame = +3

Query: 75  YKFEIENINDDYKCVICKEILINAHSGPCHCNYCYDCLIKFLHGTEKRCPGNSNACKRVX 254
           Y ++ E ++DD  C IC + L+     PC   +CY CL  FL   +  CP       R  
Sbjct: 38  YNYQNE-VDDDLVCHICLQPLLQPLDTPCGHTFCYKCLRNFLQ-EKDFCP-----LDRKR 90

Query: 255 XXXXXXXXXXXXXXEKISKLIVNCPIENCLFKDEVSKID 371
                         + + KL+V CP  + + KD + + D
Sbjct: 91  LHFKLCKKSSILVHKLLDKLLVLCPFSS-VCKDVMQRCD 128
>sp|Q96PU4|UHRF2_HUMAN Ubiquitin-like containing PHD and RING finger domains protein 2
           (Np95/ICBP90-like RING finger protein) (Np95-like RING
           finger protein) (Nuclear zinc finger protein Np97) (RING
           finger protein 107)
          Length = 802

 Score = 36.6 bits (83), Expect = 0.071
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = +3

Query: 30  NKKLMSENFERLLKEYKFEIENINDDYKCVICKEILINAHSGPCHCNYCYDCLIKFLHGT 209
           N+KL  E    L++   F ++ +   + CV C+E++    +  C  N C DCL +     
Sbjct: 706 NQKLWDEVLSHLVEGPNF-LKKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQ 764

Query: 210 EKRCP 224
              CP
Sbjct: 765 VFSCP 769
>sp|Q9BRZ2|TRI56_HUMAN Tripartite motif protein 56 (RING finger protein 109)
          Length = 755

 Score = 36.6 bits (83), Expect = 0.071
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 87  IENINDDY-KCVICKEILINAHSGPCHCNYCYDCLIKFLHGTEKRCP 224
           +E ++ D+  C IC E L    + PC   YC DCL +   G   RCP
Sbjct: 11  LEALSSDFLACKICLEQLRAPKTLPCLHTYCQDCLAQLADGGRVRCP 57
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,475,336
Number of Sequences: 369166
Number of extensions: 1047832
Number of successful extensions: 3782
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3775
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6534486000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)