Planaria EST Database


DrC_01794

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01794
         (445 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q62921|UB7I3_RAT  Ubiquitin-conjugating enzyme 7-interact...   109   2e-24
sp|Q9WUB0|UB7I3_MOUSE  Ubiquitin-conjugating enzyme 7-intera...   105   4e-23
sp|Q9BYM8|UB7I3_HUMAN  Ubiquitin-conjugating enzyme 7-intera...   103   1e-22
sp|O95376|ARI2_HUMAN  Ariadne-2 protein homolog (ARI-2) (Tri...    44   2e-04
sp|Q9Z1K6|ARI2_MOUSE  Ariadne-2 protein homolog (ARI-2) (Tri...    44   2e-04
sp|P50636|RNF19_MOUSE  RING finger protein 19 (XY body prote...    44   2e-04
sp|Q9NV58|RNF19_HUMAN  RING finger protein 19 (Dorfin) (Doub...    44   2e-04
sp|Q96EP0|RNF31_HUMAN  RING finger protein 31 (Zinc in-betwe...    41   0.001
sp|Q6ZMZ0|IBR3_HUMAN  IBR domain containing protein 3              41   0.001
sp|Q924T7|RNF31_MOUSE  RING finger protein 31                      40   0.003
>sp|Q62921|UB7I3_RAT Ubiquitin-conjugating enzyme 7-interacting protein 3 (RBCC protein
           interacting with PKC) (Protein kinase C-binding protein
           beta-15)
          Length = 498

 Score =  109 bits (273), Expect = 2e-24
 Identities = 53/123 (43%), Positives = 70/123 (56%), Gaps = 7/123 (5%)
 Frame = +2

Query: 2   CGTISCYVCRDIHKPGQSCEMWATENEDLLKNREFQKLANEKKIE-------NNEGMYCP 160
           C  ++C +C+ IH+      M   E +D L +R    +A ++  E         E MYCP
Sbjct: 382 CTRVNCLLCKAIHE-----RMNCREYQDDLAHRARNDVAAQQTTEMLRVMLQQGEAMYCP 436

Query: 161 KCTLFFEYVKGGCDGIICPICQHDICFRTKQSRWGPGGYGDTSGGCRCNVDGKKCHEECQ 340
           +C +  +  K GCD I C +C  +IC+ TK  RWGPGG GDTSGGCRC V+G  CH  CQ
Sbjct: 437 QCRIVVQK-KDGCDWIRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVNGIPCHPSCQ 495

Query: 341 NCH 349
           NCH
Sbjct: 496 NCH 498
>sp|Q9WUB0|UB7I3_MOUSE Ubiquitin-conjugating enzyme 7-interacting protein 3
           (UbcM4-interacting protein 28)
          Length = 498

 Score =  105 bits (262), Expect = 4e-23
 Identities = 52/123 (42%), Positives = 68/123 (55%), Gaps = 7/123 (5%)
 Frame = +2

Query: 2   CGTISCYVCRDIHKPGQSCEMWATENEDLLKNREFQKLANEKKIE-------NNEGMYCP 160
           C  ++C +C+ IH+      M   E +D L  R    +A  +  E         E M+CP
Sbjct: 382 CTRVNCLLCKAIHE-----HMNCREYQDDLALRAQNDVAARQTTEMLKVMLQQGEAMHCP 436

Query: 161 KCTLFFEYVKGGCDGIICPICQHDICFRTKQSRWGPGGYGDTSGGCRCNVDGKKCHEECQ 340
           +C +  +  K GCD I C +C  +IC+ TK  RWGPGG GDTSGGCRC V+G  CH  CQ
Sbjct: 437 QCRIVVQK-KDGCDWIRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVNGIPCHPSCQ 495

Query: 341 NCH 349
           NCH
Sbjct: 496 NCH 498
>sp|Q9BYM8|UB7I3_HUMAN Ubiquitin-conjugating enzyme 7-interacting protein 3 (Hepatitis B
           virus X-associated protein 4) (HBV-associated factor 4)
           (RING finger protein 54)
          Length = 500

 Score =  103 bits (258), Expect = 1e-22
 Identities = 50/122 (40%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
 Frame = +2

Query: 2   CGTISCYVCRDIHKPGQSCEMWATENEDLLKNREFQKLANEKK------IENNEGMYCPK 163
           C  ++C +C+ IH+   +C+ +    EDL    +    A +        ++  E M CP+
Sbjct: 384 CFHVNCLLCKAIHEQ-MNCKEY---QEDLALRAQNDVAARQTTEMLKVMLQQGEAMRCPQ 439

Query: 164 CTLFFEYVKGGCDGIICPICQHDICFRTKQSRWGPGGYGDTSGGCRCNVDGKKCHEECQN 343
           C +  +  K GCD I C +C  +IC+ TK  RWGPGG GDTSGGCRC V+G  CH  CQN
Sbjct: 440 CQIVVQK-KDGCDWIRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVNGIPCHPSCQN 498

Query: 344 CH 349
           CH
Sbjct: 499 CH 500
>sp|O95376|ARI2_HUMAN Ariadne-2 protein homolog (ARI-2) (Triad1 protein)
          Length = 493

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 24/80 (30%), Positives = 37/80 (46%)
 Frame = +2

Query: 2   CGTISCYVCRDIHKPGQSCEMWATENEDLLKNREFQKLANEKKIENNEGMYCPKCTLFFE 181
           C  + C+ CR ++     C   AT  + L K  +  + AN       +   CPKC +  E
Sbjct: 252 CNEVFCFKCRQMYHAPTDC---ATIRKWLTKCADDSETANYISAHTKD---CPKCNICIE 305

Query: 182 YVKGGCDGIICPICQHDICF 241
              GGC+ + C  C+HD C+
Sbjct: 306 K-NGGCNHMQCSKCKHDFCW 324
>sp|Q9Z1K6|ARI2_MOUSE Ariadne-2 protein homolog (ARI-2) (Triad1 protein)
           (UbcM4-interacting protein 48)
          Length = 492

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 24/80 (30%), Positives = 37/80 (46%)
 Frame = +2

Query: 2   CGTISCYVCRDIHKPGQSCEMWATENEDLLKNREFQKLANEKKIENNEGMYCPKCTLFFE 181
           C  + C+ CR ++     C   AT  + L K  +  + AN       +   CPKC +  E
Sbjct: 251 CSEVFCFKCRQMYHAPTDC---ATIRKWLTKCADDSETANYISAHTKD---CPKCNICIE 304

Query: 182 YVKGGCDGIICPICQHDICF 241
              GGC+ + C  C+HD C+
Sbjct: 305 K-NGGCNHMQCSKCKHDFCW 323
>sp|P50636|RNF19_MOUSE RING finger protein 19 (XY body protein) (XYbp) (Gametogenesis
           expressed protein GEG-154) (UBCM4-interacting protein
           117) (UIP117)
          Length = 840

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
 Frame = +2

Query: 2   CGTISCYVCRDIHKPGQSCEMWATENEDLLKNREFQ----KLANEKKIENNEGMYCPKCT 169
           CGT  CY C+ I  P Q+C+    E    L+ R  +      + E     ++   CP+C 
Sbjct: 246 CGTEFCYHCKQIWHPNQTCDAARQERAQSLRLRTIRSSSISYSQESGAAADDIKPCPRCA 305

Query: 170 LF-FEYVKGGCDGIICPICQHDICF 241
            +  +   G C+ + C +C  + C+
Sbjct: 306 AYIIKMNDGSCNHMTCAVCGCEFCW 330
>sp|Q9NV58|RNF19_HUMAN RING finger protein 19 (Dorfin) (Double ring-finger protein) (p38
           protein)
          Length = 838

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
 Frame = +2

Query: 2   CGTISCYVCRDIHKPGQSCEMWATENEDLLKNREFQ----KLANEKKIENNEGMYCPKCT 169
           CGT  CY C+ I  P Q+C+    E    L+ R  +      + E     ++   CP+C 
Sbjct: 246 CGTEFCYHCKQIWHPNQTCDAARQERAQSLRLRTIRSSSISYSQESGAAADDIKPCPRCA 305

Query: 170 LF-FEYVKGGCDGIICPICQHDICF 241
            +  +   G C+ + C +C  + C+
Sbjct: 306 AYIIKMNDGSCNHMTCAVCGCEFCW 330
>sp|Q96EP0|RNF31_HUMAN RING finger protein 31 (Zinc in-between-RING-finger
            ubiquitin-associated domain protein)
          Length = 1072

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
 Frame = +2

Query: 2    CGTISCYVCR----DIHKPGQSCEMWATENEDLLKNREFQKLANEKKIENNEGMYCPKCT 169
            C    C  C+    + H+ G+SCE +  +N   + + E+Q       ++ N G+ CPKC 
Sbjct: 820  CHQTFCVRCKRQWEEQHR-GRSCEDF--QNWKRMNDPEYQAQGLAMYLQEN-GIDCPKCK 875

Query: 170  LFFEYVKGGCDGIICPICQHDIC 238
              +   +GGC    C  C+H  C
Sbjct: 876  FSYALARGGCMHFHCTQCRHQFC 898
>sp|Q6ZMZ0|IBR3_HUMAN IBR domain containing protein 3
          Length = 486

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
 Frame = +2

Query: 2   CGTISCYVCRDIHKPGQSCEMWATENEDLL--KNREFQKLANEKKIENNEGMYCPKCTLF 175
           C T  CY C+ I  P Q+C+M   +    L  + +    L+  ++   ++   CP+C+ +
Sbjct: 132 CQTEFCYHCKQIWHPNQTCDMARQQRAQTLRVRTKHTSGLSYGQESGPDDIKPCPRCSAY 191

Query: 176 -FEYVKGGCDGIICPICQHDICF 241
             +   G C+ + C +C  + C+
Sbjct: 192 IIKMNDGSCNHMTCAVCGCEFCW 214
>sp|Q924T7|RNF31_MOUSE RING finger protein 31
          Length = 1066

 Score = 39.7 bits (91), Expect = 0.003
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
 Frame = +2

Query: 2    CGTISCYVCR----DIHKPGQSCEMWATENEDLLKNREFQKLANEKKIENNEGMYCPKCT 169
            C    C  C+    + H+ G+SCE +  +N     + E+Q       ++ N G+ CPKC 
Sbjct: 814  CHQTFCVRCKRQWEEQHR-GRSCEDF--QNWKRTNDPEYQAQGLAMYLQEN-GIDCPKCK 869

Query: 170  LFFEYVKGGCDGIICPICQHDIC 238
              +   +GGC    C  C+H  C
Sbjct: 870  FSYALARGGCMHFHCTQCRHQFC 892
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,198,407
Number of Sequences: 369166
Number of extensions: 931134
Number of successful extensions: 2877
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2873
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2344429560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)