Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_D14
(445 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q62921|UB7I3_RAT Ubiquitin-conjugating enzyme 7-interact... 109 2e-24
sp|Q9WUB0|UB7I3_MOUSE Ubiquitin-conjugating enzyme 7-intera... 105 4e-23
sp|Q9BYM8|UB7I3_HUMAN Ubiquitin-conjugating enzyme 7-intera... 103 1e-22
sp|O95376|ARI2_HUMAN Ariadne-2 protein homolog (ARI-2) (Tri... 44 2e-04
sp|Q9Z1K6|ARI2_MOUSE Ariadne-2 protein homolog (ARI-2) (Tri... 44 2e-04
sp|P50636|RNF19_MOUSE RING finger protein 19 (XY body prote... 44 2e-04
sp|Q9NV58|RNF19_HUMAN RING finger protein 19 (Dorfin) (Doub... 44 2e-04
sp|Q96EP0|RNF31_HUMAN RING finger protein 31 (Zinc in-betwe... 41 0.001
sp|Q6ZMZ0|IBR3_HUMAN IBR domain containing protein 3 41 0.001
sp|Q924T7|RNF31_MOUSE RING finger protein 31 40 0.003
>sp|Q62921|UB7I3_RAT Ubiquitin-conjugating enzyme 7-interacting protein 3 (RBCC protein
interacting with PKC) (Protein kinase C-binding protein
beta-15)
Length = 498
Score = 109 bits (273), Expect = 2e-24
Identities = 53/123 (43%), Positives = 70/123 (56%), Gaps = 7/123 (5%)
Frame = +2
Query: 2 CGTISCYVCRDIHKPGQSCEMWATENEDLLKNREFQKLANEKKIE-------NNEGMYCP 160
C ++C +C+ IH+ M E +D L +R +A ++ E E MYCP
Sbjct: 382 CTRVNCLLCKAIHE-----RMNCREYQDDLAHRARNDVAAQQTTEMLRVMLQQGEAMYCP 436
Query: 161 KCTLFFEYVKGGCDGIICPICQHDICFRTKQSRWGPGGYGDTSGGCRCNVDGKKCHEECQ 340
+C + + K GCD I C +C +IC+ TK RWGPGG GDTSGGCRC V+G CH CQ
Sbjct: 437 QCRIVVQK-KDGCDWIRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVNGIPCHPSCQ 495
Query: 341 NCH 349
NCH
Sbjct: 496 NCH 498
>sp|Q9WUB0|UB7I3_MOUSE Ubiquitin-conjugating enzyme 7-interacting protein 3
(UbcM4-interacting protein 28)
Length = 498
Score = 105 bits (262), Expect = 4e-23
Identities = 52/123 (42%), Positives = 68/123 (55%), Gaps = 7/123 (5%)
Frame = +2
Query: 2 CGTISCYVCRDIHKPGQSCEMWATENEDLLKNREFQKLANEKKIE-------NNEGMYCP 160
C ++C +C+ IH+ M E +D L R +A + E E M+CP
Sbjct: 382 CTRVNCLLCKAIHE-----HMNCREYQDDLALRAQNDVAARQTTEMLKVMLQQGEAMHCP 436
Query: 161 KCTLFFEYVKGGCDGIICPICQHDICFRTKQSRWGPGGYGDTSGGCRCNVDGKKCHEECQ 340
+C + + K GCD I C +C +IC+ TK RWGPGG GDTSGGCRC V+G CH CQ
Sbjct: 437 QCRIVVQK-KDGCDWIRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVNGIPCHPSCQ 495
Query: 341 NCH 349
NCH
Sbjct: 496 NCH 498
>sp|Q9BYM8|UB7I3_HUMAN Ubiquitin-conjugating enzyme 7-interacting protein 3 (Hepatitis B
virus X-associated protein 4) (HBV-associated factor 4)
(RING finger protein 54)
Length = 500
Score = 103 bits (258), Expect = 1e-22
Identities = 50/122 (40%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Frame = +2
Query: 2 CGTISCYVCRDIHKPGQSCEMWATENEDLLKNREFQKLANEKK------IENNEGMYCPK 163
C ++C +C+ IH+ +C+ + EDL + A + ++ E M CP+
Sbjct: 384 CFHVNCLLCKAIHEQ-MNCKEY---QEDLALRAQNDVAARQTTEMLKVMLQQGEAMRCPQ 439
Query: 164 CTLFFEYVKGGCDGIICPICQHDICFRTKQSRWGPGGYGDTSGGCRCNVDGKKCHEECQN 343
C + + K GCD I C +C +IC+ TK RWGPGG GDTSGGCRC V+G CH CQN
Sbjct: 440 CQIVVQK-KDGCDWIRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVNGIPCHPSCQN 498
Query: 344 CH 349
CH
Sbjct: 499 CH 500
>sp|O95376|ARI2_HUMAN Ariadne-2 protein homolog (ARI-2) (Triad1 protein)
Length = 493
Score = 43.9 bits (102), Expect = 2e-04
Identities = 24/80 (30%), Positives = 37/80 (46%)
Frame = +2
Query: 2 CGTISCYVCRDIHKPGQSCEMWATENEDLLKNREFQKLANEKKIENNEGMYCPKCTLFFE 181
C + C+ CR ++ C AT + L K + + AN + CPKC + E
Sbjct: 252 CNEVFCFKCRQMYHAPTDC---ATIRKWLTKCADDSETANYISAHTKD---CPKCNICIE 305
Query: 182 YVKGGCDGIICPICQHDICF 241
GGC+ + C C+HD C+
Sbjct: 306 K-NGGCNHMQCSKCKHDFCW 324
>sp|Q9Z1K6|ARI2_MOUSE Ariadne-2 protein homolog (ARI-2) (Triad1 protein)
(UbcM4-interacting protein 48)
Length = 492
Score = 43.9 bits (102), Expect = 2e-04
Identities = 24/80 (30%), Positives = 37/80 (46%)
Frame = +2
Query: 2 CGTISCYVCRDIHKPGQSCEMWATENEDLLKNREFQKLANEKKIENNEGMYCPKCTLFFE 181
C + C+ CR ++ C AT + L K + + AN + CPKC + E
Sbjct: 251 CSEVFCFKCRQMYHAPTDC---ATIRKWLTKCADDSETANYISAHTKD---CPKCNICIE 304
Query: 182 YVKGGCDGIICPICQHDICF 241
GGC+ + C C+HD C+
Sbjct: 305 K-NGGCNHMQCSKCKHDFCW 323
>sp|P50636|RNF19_MOUSE RING finger protein 19 (XY body protein) (XYbp) (Gametogenesis
expressed protein GEG-154) (UBCM4-interacting protein
117) (UIP117)
Length = 840
Score = 43.5 bits (101), Expect = 2e-04
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Frame = +2
Query: 2 CGTISCYVCRDIHKPGQSCEMWATENEDLLKNREFQ----KLANEKKIENNEGMYCPKCT 169
CGT CY C+ I P Q+C+ E L+ R + + E ++ CP+C
Sbjct: 246 CGTEFCYHCKQIWHPNQTCDAARQERAQSLRLRTIRSSSISYSQESGAAADDIKPCPRCA 305
Query: 170 LF-FEYVKGGCDGIICPICQHDICF 241
+ + G C+ + C +C + C+
Sbjct: 306 AYIIKMNDGSCNHMTCAVCGCEFCW 330
>sp|Q9NV58|RNF19_HUMAN RING finger protein 19 (Dorfin) (Double ring-finger protein) (p38
protein)
Length = 838
Score = 43.5 bits (101), Expect = 2e-04
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Frame = +2
Query: 2 CGTISCYVCRDIHKPGQSCEMWATENEDLLKNREFQ----KLANEKKIENNEGMYCPKCT 169
CGT CY C+ I P Q+C+ E L+ R + + E ++ CP+C
Sbjct: 246 CGTEFCYHCKQIWHPNQTCDAARQERAQSLRLRTIRSSSISYSQESGAAADDIKPCPRCA 305
Query: 170 LF-FEYVKGGCDGIICPICQHDICF 241
+ + G C+ + C +C + C+
Sbjct: 306 AYIIKMNDGSCNHMTCAVCGCEFCW 330
>sp|Q96EP0|RNF31_HUMAN RING finger protein 31 (Zinc in-between-RING-finger
ubiquitin-associated domain protein)
Length = 1072
Score = 40.8 bits (94), Expect = 0.001
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = +2
Query: 2 CGTISCYVCR----DIHKPGQSCEMWATENEDLLKNREFQKLANEKKIENNEGMYCPKCT 169
C C C+ + H+ G+SCE + +N + + E+Q ++ N G+ CPKC
Sbjct: 820 CHQTFCVRCKRQWEEQHR-GRSCEDF--QNWKRMNDPEYQAQGLAMYLQEN-GIDCPKCK 875
Query: 170 LFFEYVKGGCDGIICPICQHDIC 238
+ +GGC C C+H C
Sbjct: 876 FSYALARGGCMHFHCTQCRHQFC 898
>sp|Q6ZMZ0|IBR3_HUMAN IBR domain containing protein 3
Length = 486
Score = 40.8 bits (94), Expect = 0.001
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Frame = +2
Query: 2 CGTISCYVCRDIHKPGQSCEMWATENEDLL--KNREFQKLANEKKIENNEGMYCPKCTLF 175
C T CY C+ I P Q+C+M + L + + L+ ++ ++ CP+C+ +
Sbjct: 132 CQTEFCYHCKQIWHPNQTCDMARQQRAQTLRVRTKHTSGLSYGQESGPDDIKPCPRCSAY 191
Query: 176 -FEYVKGGCDGIICPICQHDICF 241
+ G C+ + C +C + C+
Sbjct: 192 IIKMNDGSCNHMTCAVCGCEFCW 214
>sp|Q924T7|RNF31_MOUSE RING finger protein 31
Length = 1066
Score = 39.7 bits (91), Expect = 0.003
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Frame = +2
Query: 2 CGTISCYVCR----DIHKPGQSCEMWATENEDLLKNREFQKLANEKKIENNEGMYCPKCT 169
C C C+ + H+ G+SCE + +N + E+Q ++ N G+ CPKC
Sbjct: 814 CHQTFCVRCKRQWEEQHR-GRSCEDF--QNWKRTNDPEYQAQGLAMYLQEN-GIDCPKCK 869
Query: 170 LFFEYVKGGCDGIICPICQHDIC 238
+ +GGC C C+H C
Sbjct: 870 FSYALARGGCMHFHCTQCRHQFC 892
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,198,407
Number of Sequences: 369166
Number of extensions: 931134
Number of successful extensions: 2877
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2873
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2344429560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)