Planaria EST Database


DrC_01792

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01792
         (490 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q16777|H2AQ_HUMAN  Histone H2A.q (H2A/q) (H2A-GL101)           158   7e-39
sp|P02263|H2A4_CHICK  Histone H2A-IV                              157   1e-38
sp|P13912|H2A_CAIMO  Histone H2A                                  157   1e-38
sp|P06897|H2A1_XENLA  Histone H2A.1                               157   2e-38
sp|Q99878|H2AE_HUMAN  Histone H2A.e (H2A/e)                       156   3e-38
sp|P02261|H2AC_HUMAN  Histone H2A.c/d/i/n/p (H2A.1) (H2A/c) ...   156   3e-38
sp|P20670|H2AO_HUMAN  Histone H2A.o (H2A/o) (H2A.2) (H2a-615)     156   3e-38
sp|P02262|H2A1_RAT  Histone H2A.1                                 156   3e-38
sp|P35062|H2A3_CHICK  Histone H2A-III                             155   4e-38
sp|Q93077|H2AL_HUMAN  Histone H2A.l (H2A/l)                       155   4e-38
>sp|Q16777|H2AQ_HUMAN Histone H2A.q (H2A/q) (H2A-GL101)
          Length = 129

 Score =  158 bits (399), Expect = 7e-39
 Identities = 81/107 (75%), Positives = 85/107 (79%)
 Frame = +2

Query: 62  RAGLQFPVGRIHRMLRKGNYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRII 241
           RAGLQFPVGR+HR+LRKGNYAERVGAGAP                  GNAARDNKKTRII
Sbjct: 21  RAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRII 80

Query: 242 PRHLQLAIRNDEELNKLLGSVTIAQGGVLPNIQSVLLPKKTANDKKK 382
           PRHLQLAIRNDEELNKLLG VTIAQGGVLPNIQ+VLLPKKT + K K
Sbjct: 81  PRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHKAK 127
>sp|P02263|H2A4_CHICK Histone H2A-IV
          Length = 129

 Score =  157 bits (398), Expect = 1e-38
 Identities = 81/107 (75%), Positives = 85/107 (79%)
 Frame = +2

Query: 62  RAGLQFPVGRIHRMLRKGNYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRII 241
           RAGLQFPVGR+HR+LRKGNYAERVGAGAP                  GNAARDNKKTRII
Sbjct: 21  RAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRII 80

Query: 242 PRHLQLAIRNDEELNKLLGSVTIAQGGVLPNIQSVLLPKKTANDKKK 382
           PRHLQLAIRNDEELNKLLG VTIAQGGVLPNIQ+VLLPKKT + K K
Sbjct: 81  PRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDSHKAK 127
>sp|P13912|H2A_CAIMO Histone H2A
          Length = 129

 Score =  157 bits (398), Expect = 1e-38
 Identities = 81/107 (75%), Positives = 85/107 (79%)
 Frame = +2

Query: 62  RAGLQFPVGRIHRMLRKGNYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRII 241
           RAGLQFPVGR+HR+LRKGNYAERVGAGAP                  GNAARDNKKTRII
Sbjct: 21  RAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRII 80

Query: 242 PRHLQLAIRNDEELNKLLGSVTIAQGGVLPNIQSVLLPKKTANDKKK 382
           PRHLQLAIRNDEELNKLLG VTIAQGGVLPNIQ+VLLPKKT + K K
Sbjct: 81  PRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDSHKAK 127
>sp|P06897|H2A1_XENLA Histone H2A.1
          Length = 130

 Score =  157 bits (396), Expect = 2e-38
 Identities = 80/105 (76%), Positives = 84/105 (80%)
 Frame = +2

Query: 62  RAGLQFPVGRIHRMLRKGNYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRII 241
           RAGLQFPVGR+HR+LRKGNYAERVGAGAP                  GNAARDNKKTRII
Sbjct: 21  RAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRII 80

Query: 242 PRHLQLAIRNDEELNKLLGSVTIAQGGVLPNIQSVLLPKKTANDK 376
           PRHLQLA+RNDEELNKLLG VTIAQGGVLPNIQSVLLPKKT + K
Sbjct: 81  PRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQSVLLPKKTESAK 125
>sp|Q99878|H2AE_HUMAN Histone H2A.e (H2A/e)
          Length = 128

 Score =  156 bits (394), Expect = 3e-38
 Identities = 80/106 (75%), Positives = 84/106 (79%)
 Frame = +2

Query: 62  RAGLQFPVGRIHRMLRKGNYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRII 241
           RAGLQFPVGR+HR+LRKGNYAERVGAGAP                  GNAARDNKKTRII
Sbjct: 21  RAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRII 80

Query: 242 PRHLQLAIRNDEELNKLLGSVTIAQGGVLPNIQSVLLPKKTANDKK 379
           PRHLQLAIRNDEELNKLLG VTIAQGGVLPNIQ+VLLPKKT +  K
Sbjct: 81  PRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126
>sp|P02261|H2AC_HUMAN Histone H2A.c/d/i/n/p (H2A.1) (H2A/c) (H2A/d) (H2A/i) (H2A/n)
           (H2A/p) (H2A.1b)
          Length = 130

 Score =  156 bits (394), Expect = 3e-38
 Identities = 80/106 (75%), Positives = 84/106 (79%)
 Frame = +2

Query: 62  RAGLQFPVGRIHRMLRKGNYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRII 241
           RAGLQFPVGR+HR+LRKGNYAERVGAGAP                  GNAARDNKKTRII
Sbjct: 21  RAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRII 80

Query: 242 PRHLQLAIRNDEELNKLLGSVTIAQGGVLPNIQSVLLPKKTANDKK 379
           PRHLQLAIRNDEELNKLLG VTIAQGGVLPNIQ+VLLPKKT +  K
Sbjct: 81  PRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126
>sp|P20670|H2AO_HUMAN Histone H2A.o (H2A/o) (H2A.2) (H2a-615)
          Length = 130

 Score =  156 bits (394), Expect = 3e-38
 Identities = 80/106 (75%), Positives = 84/106 (79%)
 Frame = +2

Query: 62  RAGLQFPVGRIHRMLRKGNYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRII 241
           RAGLQFPVGR+HR+LRKGNYAERVGAGAP                  GNAARDNKKTRII
Sbjct: 21  RAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRII 80

Query: 242 PRHLQLAIRNDEELNKLLGSVTIAQGGVLPNIQSVLLPKKTANDKK 379
           PRHLQLAIRNDEELNKLLG VTIAQGGVLPNIQ+VLLPKKT +  K
Sbjct: 81  PRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126
>sp|P02262|H2A1_RAT Histone H2A.1
          Length = 129

 Score =  156 bits (394), Expect = 3e-38
 Identities = 80/106 (75%), Positives = 84/106 (79%)
 Frame = +2

Query: 62  RAGLQFPVGRIHRMLRKGNYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRII 241
           RAGLQFPVGR+HR+LRKGNYAERVGAGAP                  GNAARDNKKTRII
Sbjct: 20  RAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRII 79

Query: 242 PRHLQLAIRNDEELNKLLGSVTIAQGGVLPNIQSVLLPKKTANDKK 379
           PRHLQLAIRNDEELNKLLG VTIAQGGVLPNIQ+VLLPKKT +  K
Sbjct: 80  PRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 125
>sp|P35062|H2A3_CHICK Histone H2A-III
          Length = 129

 Score =  155 bits (393), Expect = 4e-38
 Identities = 80/107 (74%), Positives = 84/107 (78%)
 Frame = +2

Query: 62  RAGLQFPVGRIHRMLRKGNYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRII 241
           RAGLQFPVGR+HR+LRKGNYAERVGAGAP                  GN ARDNKKTRII
Sbjct: 21  RAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNPARDNKKTRII 80

Query: 242 PRHLQLAIRNDEELNKLLGSVTIAQGGVLPNIQSVLLPKKTANDKKK 382
           PRHLQLAIRNDEELNKLLG VTIAQGGVLPNIQ+VLLPKKT + K K
Sbjct: 81  PRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDSHKAK 127
>sp|Q93077|H2AL_HUMAN Histone H2A.l (H2A/l)
          Length = 130

 Score =  155 bits (393), Expect = 4e-38
 Identities = 80/106 (75%), Positives = 84/106 (79%)
 Frame = +2

Query: 62  RAGLQFPVGRIHRMLRKGNYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRII 241
           RAGLQFPVGR+HR+LRKGNYAERVGAGAP                  GNAARDNKKTRII
Sbjct: 21  RAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRII 80

Query: 242 PRHLQLAIRNDEELNKLLGSVTIAQGGVLPNIQSVLLPKKTANDKK 379
           PRHLQLAIRNDEELNKLLG VTIAQGGVLPNIQ+VLLPKKT +  K
Sbjct: 81  PRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHK 126
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,734,789
Number of Sequences: 369166
Number of extensions: 658976
Number of successful extensions: 1733
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1634
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2970720600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)