Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_D02
(490 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q16777|H2AQ_HUMAN Histone H2A.q (H2A/q) (H2A-GL101) 158 7e-39
sp|P02263|H2A4_CHICK Histone H2A-IV 157 1e-38
sp|P13912|H2A_CAIMO Histone H2A 157 1e-38
sp|P06897|H2A1_XENLA Histone H2A.1 157 2e-38
sp|Q99878|H2AE_HUMAN Histone H2A.e (H2A/e) 156 3e-38
sp|P02261|H2AC_HUMAN Histone H2A.c/d/i/n/p (H2A.1) (H2A/c) ... 156 3e-38
sp|P20670|H2AO_HUMAN Histone H2A.o (H2A/o) (H2A.2) (H2a-615) 156 3e-38
sp|P02262|H2A1_RAT Histone H2A.1 156 3e-38
sp|P35062|H2A3_CHICK Histone H2A-III 155 4e-38
sp|Q93077|H2AL_HUMAN Histone H2A.l (H2A/l) 155 4e-38
>sp|Q16777|H2AQ_HUMAN Histone H2A.q (H2A/q) (H2A-GL101)
Length = 129
Score = 158 bits (399), Expect = 7e-39
Identities = 81/107 (75%), Positives = 85/107 (79%)
Frame = +2
Query: 62 RAGLQFPVGRIHRMLRKGNYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRII 241
RAGLQFPVGR+HR+LRKGNYAERVGAGAP GNAARDNKKTRII
Sbjct: 21 RAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRII 80
Query: 242 PRHLQLAIRNDEELNKLLGSVTIAQGGVLPNIQSVLLPKKTANDKKK 382
PRHLQLAIRNDEELNKLLG VTIAQGGVLPNIQ+VLLPKKT + K K
Sbjct: 81 PRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHKAK 127
>sp|P02263|H2A4_CHICK Histone H2A-IV
Length = 129
Score = 157 bits (398), Expect = 1e-38
Identities = 81/107 (75%), Positives = 85/107 (79%)
Frame = +2
Query: 62 RAGLQFPVGRIHRMLRKGNYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRII 241
RAGLQFPVGR+HR+LRKGNYAERVGAGAP GNAARDNKKTRII
Sbjct: 21 RAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRII 80
Query: 242 PRHLQLAIRNDEELNKLLGSVTIAQGGVLPNIQSVLLPKKTANDKKK 382
PRHLQLAIRNDEELNKLLG VTIAQGGVLPNIQ+VLLPKKT + K K
Sbjct: 81 PRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDSHKAK 127
>sp|P13912|H2A_CAIMO Histone H2A
Length = 129
Score = 157 bits (398), Expect = 1e-38
Identities = 81/107 (75%), Positives = 85/107 (79%)
Frame = +2
Query: 62 RAGLQFPVGRIHRMLRKGNYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRII 241
RAGLQFPVGR+HR+LRKGNYAERVGAGAP GNAARDNKKTRII
Sbjct: 21 RAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRII 80
Query: 242 PRHLQLAIRNDEELNKLLGSVTIAQGGVLPNIQSVLLPKKTANDKKK 382
PRHLQLAIRNDEELNKLLG VTIAQGGVLPNIQ+VLLPKKT + K K
Sbjct: 81 PRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDSHKAK 127
>sp|P06897|H2A1_XENLA Histone H2A.1
Length = 130
Score = 157 bits (396), Expect = 2e-38
Identities = 80/105 (76%), Positives = 84/105 (80%)
Frame = +2
Query: 62 RAGLQFPVGRIHRMLRKGNYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRII 241
RAGLQFPVGR+HR+LRKGNYAERVGAGAP GNAARDNKKTRII
Sbjct: 21 RAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRII 80
Query: 242 PRHLQLAIRNDEELNKLLGSVTIAQGGVLPNIQSVLLPKKTANDK 376
PRHLQLA+RNDEELNKLLG VTIAQGGVLPNIQSVLLPKKT + K
Sbjct: 81 PRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQSVLLPKKTESAK 125
>sp|Q99878|H2AE_HUMAN Histone H2A.e (H2A/e)
Length = 128
Score = 156 bits (394), Expect = 3e-38
Identities = 80/106 (75%), Positives = 84/106 (79%)
Frame = +2
Query: 62 RAGLQFPVGRIHRMLRKGNYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRII 241
RAGLQFPVGR+HR+LRKGNYAERVGAGAP GNAARDNKKTRII
Sbjct: 21 RAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRII 80
Query: 242 PRHLQLAIRNDEELNKLLGSVTIAQGGVLPNIQSVLLPKKTANDKK 379
PRHLQLAIRNDEELNKLLG VTIAQGGVLPNIQ+VLLPKKT + K
Sbjct: 81 PRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126
>sp|P02261|H2AC_HUMAN Histone H2A.c/d/i/n/p (H2A.1) (H2A/c) (H2A/d) (H2A/i) (H2A/n)
(H2A/p) (H2A.1b)
Length = 130
Score = 156 bits (394), Expect = 3e-38
Identities = 80/106 (75%), Positives = 84/106 (79%)
Frame = +2
Query: 62 RAGLQFPVGRIHRMLRKGNYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRII 241
RAGLQFPVGR+HR+LRKGNYAERVGAGAP GNAARDNKKTRII
Sbjct: 21 RAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRII 80
Query: 242 PRHLQLAIRNDEELNKLLGSVTIAQGGVLPNIQSVLLPKKTANDKK 379
PRHLQLAIRNDEELNKLLG VTIAQGGVLPNIQ+VLLPKKT + K
Sbjct: 81 PRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126
>sp|P20670|H2AO_HUMAN Histone H2A.o (H2A/o) (H2A.2) (H2a-615)
Length = 130
Score = 156 bits (394), Expect = 3e-38
Identities = 80/106 (75%), Positives = 84/106 (79%)
Frame = +2
Query: 62 RAGLQFPVGRIHRMLRKGNYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRII 241
RAGLQFPVGR+HR+LRKGNYAERVGAGAP GNAARDNKKTRII
Sbjct: 21 RAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRII 80
Query: 242 PRHLQLAIRNDEELNKLLGSVTIAQGGVLPNIQSVLLPKKTANDKK 379
PRHLQLAIRNDEELNKLLG VTIAQGGVLPNIQ+VLLPKKT + K
Sbjct: 81 PRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126
>sp|P02262|H2A1_RAT Histone H2A.1
Length = 129
Score = 156 bits (394), Expect = 3e-38
Identities = 80/106 (75%), Positives = 84/106 (79%)
Frame = +2
Query: 62 RAGLQFPVGRIHRMLRKGNYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRII 241
RAGLQFPVGR+HR+LRKGNYAERVGAGAP GNAARDNKKTRII
Sbjct: 20 RAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRII 79
Query: 242 PRHLQLAIRNDEELNKLLGSVTIAQGGVLPNIQSVLLPKKTANDKK 379
PRHLQLAIRNDEELNKLLG VTIAQGGVLPNIQ+VLLPKKT + K
Sbjct: 80 PRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 125
>sp|P35062|H2A3_CHICK Histone H2A-III
Length = 129
Score = 155 bits (393), Expect = 4e-38
Identities = 80/107 (74%), Positives = 84/107 (78%)
Frame = +2
Query: 62 RAGLQFPVGRIHRMLRKGNYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRII 241
RAGLQFPVGR+HR+LRKGNYAERVGAGAP GN ARDNKKTRII
Sbjct: 21 RAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNPARDNKKTRII 80
Query: 242 PRHLQLAIRNDEELNKLLGSVTIAQGGVLPNIQSVLLPKKTANDKKK 382
PRHLQLAIRNDEELNKLLG VTIAQGGVLPNIQ+VLLPKKT + K K
Sbjct: 81 PRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDSHKAK 127
>sp|Q93077|H2AL_HUMAN Histone H2A.l (H2A/l)
Length = 130
Score = 155 bits (393), Expect = 4e-38
Identities = 80/106 (75%), Positives = 84/106 (79%)
Frame = +2
Query: 62 RAGLQFPVGRIHRMLRKGNYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRII 241
RAGLQFPVGR+HR+LRKGNYAERVGAGAP GNAARDNKKTRII
Sbjct: 21 RAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRII 80
Query: 242 PRHLQLAIRNDEELNKLLGSVTIAQGGVLPNIQSVLLPKKTANDKK 379
PRHLQLAIRNDEELNKLLG VTIAQGGVLPNIQ+VLLPKKT + K
Sbjct: 81 PRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHK 126
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,734,789
Number of Sequences: 369166
Number of extensions: 658976
Number of successful extensions: 1733
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1634
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2970720600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)