Planaria EST Database


DrC_01786

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01786
         (370 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q99PW8|KIF17_MOUSE  Kinesin-like protein KIF17 (MmKIF17)        35   0.041
sp|P41511|TOP1_USTMA  DNA topoisomerase I                          35   0.054
sp|Q96L73|NSD1_HUMAN  Histone-lysine N-methyltransferase, H3...    34   0.092
sp|O76041|NEBL_HUMAN  Nebulette (Actin-binding Z-disk protein)     34   0.12 
sp|Q5B0V6|AKR1_EMENI  Palmitoyltransferase AKR1 (Ankyrin rep...    33   0.16 
sp|Q9PP04|AMPA_CAMJE  Probable cytosol aminopeptidase (Leuci...    33   0.27 
sp|P35209|SPT21_YEAST  SPT21 protein                               32   0.46 
sp|P25439|BRM_DROME  Homeotic gene regulator (Brahma protein)      31   0.78 
sp|P23731|IFEB_ASCSU  Intermediate filament protein B (IF-B)       31   1.0  
sp|O33600|RAD50_SULAC  DNA double-strand break repair rad50 ...    31   1.0  
>sp|Q99PW8|KIF17_MOUSE Kinesin-like protein KIF17 (MmKIF17)
          Length = 1038

 Score = 35.4 bits (80), Expect = 0.041
 Identities = 30/96 (31%), Positives = 46/96 (47%)
 Frame = +2

Query: 38   ELRLSNSEMKNEIIPEIPRIYDRSQNSQDSETFYKNIKSLLQQIQDKKRVDSNYQNQEMI 217
            E++   SE + E I  +  I    +  +DS  F    + LL+Q+Q   R D NY N E I
Sbjct: 837  EIKDLQSEFQLEKIDYLATI---RRQERDSMLF----QQLLEQVQPLIRRDCNYSNLEKI 889

Query: 218  NPKSNSEEANSITKVNYADPKIIRKVLKVAKRRTND 325
              +S+ +E N   K+   DP I++  L V    T +
Sbjct: 890  RRESSWDEDNGFWKI--PDPIILKTSLPVVPTGTQN 923
>sp|P41511|TOP1_USTMA DNA topoisomerase I
          Length = 1019

 Score = 35.0 bits (79), Expect = 0.054
 Identities = 23/86 (26%), Positives = 41/86 (47%)
 Frame = +2

Query: 68   NEIIPEIPRIYDRSQNSQDSETFYKNIKSLLQQIQDKKRVDSNYQNQEMINPKSNSEEAN 247
            NE    + +    +++   S  F  + K +L + +  K+     Q  E++N  + S+ A 
Sbjct: 761  NETAKRLEKERKTNKSQATSCNFVSSAKKILSKYEMIKK-----QEAELVNKNNTSDVAL 815

Query: 248  SITKVNYADPKIIRKVLKVAKRRTND 325
            S +K+NY DP+I    LK    R +D
Sbjct: 816  STSKLNYIDPRITLAWLKEWDDRLSD 841
>sp|Q96L73|NSD1_HUMAN Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20
           specific (H3-K36-HMTase) (H4-K20-HMTase) (Nuclear
           receptor binding SET domain containing protein 1)
           (NR-binding SET domain containing protein) (Androgen
           receptor-associated coregulator 267)
          Length = 2696

 Score = 34.3 bits (77), Expect = 0.092
 Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
 Frame = +2

Query: 26  LDPAELRLSNSEMKNEIIPEIPRIYDRSQN----SQDSETFYKNIKSLLQQIQDKKR-VD 190
           LDP E    +SE  N ++ EIP  +DR++N     ++ +  Y    +   +++ K++ + 
Sbjct: 649 LDPIE---HSSESDNSVL-EIPDAFDRTENMLSMQKNEKIKYSRFAATNTRVKAKQKPLI 704

Query: 191 SNYQNQEMINPKSNSEEANSITKVNYADPKIIRKVLKVAKRRTNDWVWLKFD 346
           SN     ++    ++E     ++VN +D K    V K     TND +  KF+
Sbjct: 705 SNSHTDHLMGCTKSAEPGTETSQVNLSDLKASTLVHKPQSDFTNDALSPKFN 756
>sp|O76041|NEBL_HUMAN Nebulette (Actin-binding Z-disk protein)
          Length = 1014

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 29/98 (29%), Positives = 44/98 (44%)
 Frame = +2

Query: 29  DPAELRLSNSEMKNEIIPEIPRIYDRSQNSQDSETFYKNIKSLLQQIQDKKRVDSNYQNQ 208
           D AE  LSN     +  PEI RI    QN   S  FYK        ++D   ++   +NQ
Sbjct: 562 DEAEKMLSNYSTIADT-PEIQRIKTTQQNI--SAVFYKKEVGAGTAVKDSPEIERVKKNQ 618

Query: 209 EMINPKSNSEEANSITKVNYADPKIIRKVLKVAKRRTN 322
           + I+     EE    T +  +DP  +++V +  K  +N
Sbjct: 619 QNISSVKYKEEIKHATAI--SDPPELKRVKENQKNISN 654
>sp|Q5B0V6|AKR1_EMENI Palmitoyltransferase AKR1 (Ankyrin repeat-containing protein AKR1)
          Length = 737

 Score = 33.5 bits (75), Expect = 0.16
 Identities = 20/70 (28%), Positives = 36/70 (51%)
 Frame = +2

Query: 14  PSIALDPAELRLSNSEMKNEIIPEIPRIYDRSQNSQDSETFYKNIKSLLQQIQDKKRVDS 193
           P +A D A + LS+ + +      IP   D  Q ++  E       S++Q++ D+K+  +
Sbjct: 38  PKVATDDASVELSSMKSERSPAKSIPLGEDIMQVARIGEV------SVMQKLFDEKKFTA 91

Query: 194 NYQNQEMINP 223
           NY ++E I P
Sbjct: 92  NYSDEEGITP 101
>sp|Q9PP04|AMPA_CAMJE Probable cytosol aminopeptidase (Leucine aminopeptidase) (LAP)
           (Leucyl aminopeptidase)
          Length = 483

 Score = 32.7 bits (73), Expect = 0.27
 Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
 Frame = +2

Query: 20  IALDPAELRLSNSEMKNEIIPEIPRIYDRSQNSQDSETFYKNIKSLLQQIQDKKRVDSNY 199
           I L+  E+  + +     I+ EIP IY   + ++D++   K  K+++ +I D+K +    
Sbjct: 149 IGLERGEILANATNFTKNIVNEIPEIYTPLKMAEDAQNLAKENKNIICKIYDEKFL---- 204

Query: 200 QNQEMINPKSNSEEANSITKVNYAD---PKIIRKVLKV--AKRR 316
                       E+ N+   VN+A    P++I    K   AK+R
Sbjct: 205 ----------AKEKMNAFLAVNHASVHPPRLIHLSYKAKNAKKR 238
>sp|P35209|SPT21_YEAST SPT21 protein
          Length = 758

 Score = 32.0 bits (71), Expect = 0.46
 Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 14/108 (12%)
 Frame = +2

Query: 5   NPKPSIALDPAELRLSNSEMK---NEIIPEIPRIYDRS--QNSQDSETFYKNI------- 148
           +P P+ + +  ELR+    +K   +EI    P + D    ++  D   +Y++I       
Sbjct: 40  SPFPTDSNEQTELRIGAIHLKTILHEIYLNSPEVLDHDTLKDGYDYNLYYRDICEVDEPL 99

Query: 149 --KSLLQQIQDKKRVDSNYQNQEMINPKSNSEEANSITKVNYADPKII 286
               LL  ++ K   +S YQ  E    +  SEE + +T+  Y D   I
Sbjct: 100 VSLGLLSGLRKKFHKNSPYQYTENNIGEEESEERDEVTEEEYEDESFI 147
>sp|P25439|BRM_DROME Homeotic gene regulator (Brahma protein)
          Length = 1638

 Score = 31.2 bits (69), Expect = 0.78
 Identities = 17/58 (29%), Positives = 31/58 (53%)
 Frame = +2

Query: 143  NIKSLLQQIQDKKRVDSNYQNQEMINPKSNSEEANSITKVNYADPKIIRKVLKVAKRR 316
            +IK +LQ+I+D K  D N   ++ +    N++  N    + Y D   ++KV   A++R
Sbjct: 1472 DIKKILQRIEDCKYADLNELEKDFMQLCQNAQIYNEEASLIYLDSIALQKVFVGARQR 1529
>sp|P23731|IFEB_ASCSU Intermediate filament protein B (IF-B)
          Length = 589

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
 Frame = +2

Query: 20  IALDPAELRLSNSEMKNEIIPEIPRIYDR-----SQNSQDSETFYKNIKSLLQQIQDKKR 184
           +A  PA+ R      KNE+   I  I D       Q  QD E++YK   S +Q   ++  
Sbjct: 272 LAQAPADTR---EFFKNELALAIRDIKDEYDYIAKQGKQDMESWYKLKVSEVQGSANRAN 328

Query: 185 VDSNYQNQEMINPKSN 232
           ++S+YQ +E+   + N
Sbjct: 329 MESSYQREEVKRMRDN 344
>sp|O33600|RAD50_SULAC DNA double-strand break repair rad50 ATPase
          Length = 886

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 15/73 (20%), Positives = 35/73 (47%)
 Frame = +2

Query: 104 RSQNSQDSETFYKNIKSLLQQIQDKKRVDSNYQNQEMINPKSNSEEANSITKVNYADPKI 283
           R +  ++ E  Y+ I+   +++++K++     + +     K+   + N I K+NY D + 
Sbjct: 327 RKKELEEKEKQYEEIEKRKKELEEKEKQYEEIEKRLTYVLKNIERQKNEIEKLNYVDTQD 386

Query: 284 IRKVLKVAKRRTN 322
           +   +K    R N
Sbjct: 387 LENKIKDVSDRIN 399
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,909,609
Number of Sequences: 369166
Number of extensions: 394176
Number of successful extensions: 1702
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1701
length of database: 68,354,980
effective HSP length: 89
effective length of database: 51,913,565
effective search space used: 1713147645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)