Planaria EST Database


DrC_01784

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01784
         (656 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P49263|PXN1_XENLA  Pentraxin fusion protein precursor           52   1e-06
sp|P31845|SP56_BACSU  Stage V sporulation protein AF               32   1.9  
sp|P28743|KIP2_YEAST  Kinesin-like protein KIP2                    31   2.5  
sp|Q28983|ZAN_PIG  Zonadhesin precursor                            31   3.2  
sp|P96084|PIP_THEAC  Proline iminopeptidase (PIP) (Prolyl am...    30   7.2  
sp|O67685|YI24_AQUAE  Hypothetical protein AQ_1824                 30   7.2  
sp|P13423|PAG_BACAN  Protective antigen precursor (PA) (PA-8...    29   9.4  
sp|O42945|DHX15_SCHPO  Probable pre-mRNA splicing factor RNA...    29   9.4  
sp|Q8CP17|DNAK_STAES  Chaperone protein dnaK (Heat shock pro...    29   9.4  
sp|P50598|TOLQ_PSEAE  Protein tolQ                                 29   9.4  
>sp|P49263|PXN1_XENLA Pentraxin fusion protein precursor
          Length = 416

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
 Frame = +2

Query: 170 DGNYDQNYQ--NCTHTNREINPYWTVDLLNTSYIDRVVIFNRNDAKSERLVGAQIEL--- 334
           DG+   NY   +C HT ++++P+W +D+ +   +  V I NR D   ER+ GA+I +   
Sbjct: 63  DGSLASNYMEGDCCHTEKQMHPWWQLDMKSKMRVHSVAITNRGDCCRERINGAEIRIGNS 122

Query: 335 LDETDSIVHVCGSILKVQSRNII--QCDKRPARKVRIQ-QYKNGTLTVCEVDVYGD 493
             E       CG + K+     +   C +   R V +    +   LT+CEV V+ D
Sbjct: 123 KKEGGLNSTRCGVVFKMNYEETLSFNCKELEGRYVTVTIPDRIEYLTLCEVQVFAD 178
>sp|P31845|SP56_BACSU Stage V sporulation protein AF
          Length = 492

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 15/91 (16%)
 Frame = +2

Query: 119 PTSMSSQYKDKVKEFGNDGNYDQNYQNCTHTNREINPYWTVDLLNTSYI-----DRVVIF 283
           P      +K++V   G   +YD   +  T  ++EI  Y+   L +T+YI     + V I 
Sbjct: 15  PAKNEEYFKNRV---GMGTSYDVGVRKLTILDKEIQLYYLNGLCDTAYIIHLMRELVAIN 71

Query: 284 NRNDAKSE-------RLVGAQIE---LLDET 346
           NR +   E       RL+ AQ+E    LDET
Sbjct: 72  NRKEDPDELVDIVENRLLNAQVEKVKTLDET 102
>sp|P28743|KIP2_YEAST Kinesin-like protein KIP2
          Length = 706

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 44  TVCEVDVYGDIAS-TINGAQLLSRSKPTSMSSQYKDKVKEFGNDGNYDQNYQ 196
           T+C VD   D A+ T+N  +  SR+K  ++    K  +    NDG+ D+  +
Sbjct: 466 TICTVDTRNDAAAETMNTLRFASRAKNVALHVSKKSIISNGNNDGDKDRTIE 517
>sp|Q28983|ZAN_PIG Zonadhesin precursor
          Length = 2476

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
 Frame = +2

Query: 407 CDKRPARKVRIQQYKNGTLTVCEV-------DVYGDSSPDIIGYIEYITHQSR 544
           C  RP+ ++  Q +K GT TVC++         YG ++  + G   Y+T   R
Sbjct: 763 CHCRPSSRMECQTFKCGTHTVCQLKNGQYGCHPYGSATCSVYGDPHYLTFDGR 815
>sp|P96084|PIP_THEAC Proline iminopeptidase (PIP) (Prolyl aminopeptidase) (PAP) (Tricorn
           protease interacting factor F1)
          Length = 293

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
 Frame = +2

Query: 128 MSSQYKDKVKEFGNDGNYDQ-NYQNCT----HTNREINPYWTVDLLNT-SYIDRVVIFNR 289
           + ++Y+D +K++G+ G+Y+   YQ       H +   +  W  ++L +  Y +R  ++  
Sbjct: 148 LPAKYRDAIKKYGSSGSYENPEYQEAVNYFYHQHLLRSEDWPPEVLKSLEYAERRNVYRI 207

Query: 290 NDAKSERLVGAQIELLDETDSI 355
            +  +E  +   I+  D TD I
Sbjct: 208 MNGPNEFTITGTIKDWDITDKI 229
>sp|O67685|YI24_AQUAE Hypothetical protein AQ_1824
          Length = 355

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 27/114 (23%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
 Frame = +2

Query: 299 KSERLVG-AQIELLDETDSIVHVCGSILKV------QSRNIIQCDKRPARKVRIQQYKNG 457
           K ER  G  ++E  DETD ++   GS+ K+      +   +   +  P+ + +I  YK+ 
Sbjct: 25  KKERFTGYIKVESWDETDYVILAEGSVKKIVRHKDNKKTFLDTSNYTPSSESKISVYKSS 84

Query: 458 TLT---VC-EVDVYGDSSPDIIGYIEYITH-QSRIADQEKRQNSNEIITISQLA 604
            LT   +C +++ +   +  + GY E I H +  + + EK +   + + ++  A
Sbjct: 85  PLTTAHICKDLNFFEYQTLSLSGYGEEIFHSELNLVNPEKLETFFQKVNLNGYA 138
>sp|P13423|PAG_BACAN Protective antigen precursor (PA) (PA-83) (PA83) (Anthrax toxins
           translocating protein) [Contains: Protective antigen
           PA-20 (PA20); Protective antigen PA-63 (PA63)]
          Length = 764

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 21/77 (27%), Positives = 36/77 (46%)
 Frame = +2

Query: 59  DVYGDIASTINGAQLLSRSKPTSMSSQYKDKVKEFGNDGNYDQNYQNCTHTNREINPYWT 238
           +V  D    +N + L    K      +Y DK+  + ++ NY  N    T  N  INP   
Sbjct: 683 EVINDRYDMLNISSLRQDGKTFIDFKKYNDKLPLYISNPNYKVNVYAVTKENTIINPSEN 742

Query: 239 VDLLNTSYIDRVVIFNR 289
            D  +T+ I +++IF++
Sbjct: 743 GD-TSTNGIKKILIFSK 758
>sp|O42945|DHX15_SCHPO Probable pre-mRNA splicing factor RNA helicase prp43
          Length = 735

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
 Frame = +2

Query: 2   ARKVRIQQYKNGTLTVCEVDVYGDIASTINGAQLLSRSKPTSMSSQYKDKVKEFGNDGNY 181
           A+K   Q+ KN  L    ++   D    ++   L  R+   + +++ ++    F ND  +
Sbjct: 4   AQKKLRQESKNPYLA--HLNNGDDSEEVVSSKGLTRRATTVAQAAKAEEGPNNFFNDKPF 61

Query: 182 DQNYQNCTHTNREINPY-WTVDLLNTSYIDRVVIFNRNDAKSERLVGAQIELLDE 343
            QNY     T RE+  Y    + L   + +++++F       +     Q  L DE
Sbjct: 62  SQNYFKILETRRELPVYQQREEFLKIYHENQIIVFVGETGSGKTTQIPQFVLYDE 116
>sp|Q8CP17|DNAK_STAES Chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa
           protein) (HSP70)
          Length = 609

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
 Frame = +2

Query: 209 TNREIN-PYWTVDLLNTSYIDRVVIFNRNDAKSERLVGAQIELLDETDSIVHVCGSILKV 385
           TN+E N    +   L+   IDR+V     +A++++    +++L +E DS+V      +K 
Sbjct: 463 TNKEQNITIQSSSSLSDEEIDRMVKDAEENAEADKKRREEVDLRNEADSLVFQVEKTVKD 522

Query: 386 QSRNIIQCDKRPARK 430
              NI   DK+ A +
Sbjct: 523 LGENISDEDKKNAEE 537
>sp|P50598|TOLQ_PSEAE Protein tolQ
          Length = 231

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 263 IDRVVIFNRNDAKSERLVGAQIELLDETDSIVH 361
           I  V+ +NR  A+SE L+G      DE  +I+H
Sbjct: 191 IPAVIAYNRFSARSEMLIGRYYTFADEFQAILH 223
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,520,669
Number of Sequences: 369166
Number of extensions: 1273370
Number of successful extensions: 3130
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3130
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5462583840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)