Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_B15
(656 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P49263|PXN1_XENLA Pentraxin fusion protein precursor 52 1e-06
sp|P31845|SP56_BACSU Stage V sporulation protein AF 32 1.9
sp|P28743|KIP2_YEAST Kinesin-like protein KIP2 31 2.5
sp|Q28983|ZAN_PIG Zonadhesin precursor 31 3.2
sp|P96084|PIP_THEAC Proline iminopeptidase (PIP) (Prolyl am... 30 7.2
sp|O67685|YI24_AQUAE Hypothetical protein AQ_1824 30 7.2
sp|P13423|PAG_BACAN Protective antigen precursor (PA) (PA-8... 29 9.4
sp|O42945|DHX15_SCHPO Probable pre-mRNA splicing factor RNA... 29 9.4
sp|Q8CP17|DNAK_STAES Chaperone protein dnaK (Heat shock pro... 29 9.4
sp|P50598|TOLQ_PSEAE Protein tolQ 29 9.4
>sp|P49263|PXN1_XENLA Pentraxin fusion protein precursor
Length = 416
Score = 52.0 bits (123), Expect = 1e-06
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Frame = +2
Query: 170 DGNYDQNYQ--NCTHTNREINPYWTVDLLNTSYIDRVVIFNRNDAKSERLVGAQIEL--- 334
DG+ NY +C HT ++++P+W +D+ + + V I NR D ER+ GA+I +
Sbjct: 63 DGSLASNYMEGDCCHTEKQMHPWWQLDMKSKMRVHSVAITNRGDCCRERINGAEIRIGNS 122
Query: 335 LDETDSIVHVCGSILKVQSRNII--QCDKRPARKVRIQ-QYKNGTLTVCEVDVYGD 493
E CG + K+ + C + R V + + LT+CEV V+ D
Sbjct: 123 KKEGGLNSTRCGVVFKMNYEETLSFNCKELEGRYVTVTIPDRIEYLTLCEVQVFAD 178
>sp|P31845|SP56_BACSU Stage V sporulation protein AF
Length = 492
Score = 31.6 bits (70), Expect = 1.9
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 15/91 (16%)
Frame = +2
Query: 119 PTSMSSQYKDKVKEFGNDGNYDQNYQNCTHTNREINPYWTVDLLNTSYI-----DRVVIF 283
P +K++V G +YD + T ++EI Y+ L +T+YI + V I
Sbjct: 15 PAKNEEYFKNRV---GMGTSYDVGVRKLTILDKEIQLYYLNGLCDTAYIIHLMRELVAIN 71
Query: 284 NRNDAKSE-------RLVGAQIE---LLDET 346
NR + E RL+ AQ+E LDET
Sbjct: 72 NRKEDPDELVDIVENRLLNAQVEKVKTLDET 102
>sp|P28743|KIP2_YEAST Kinesin-like protein KIP2
Length = 706
Score = 31.2 bits (69), Expect = 2.5
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 44 TVCEVDVYGDIAS-TINGAQLLSRSKPTSMSSQYKDKVKEFGNDGNYDQNYQ 196
T+C VD D A+ T+N + SR+K ++ K + NDG+ D+ +
Sbjct: 466 TICTVDTRNDAAAETMNTLRFASRAKNVALHVSKKSIISNGNNDGDKDRTIE 517
>sp|Q28983|ZAN_PIG Zonadhesin precursor
Length = 2476
Score = 30.8 bits (68), Expect = 3.2
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Frame = +2
Query: 407 CDKRPARKVRIQQYKNGTLTVCEV-------DVYGDSSPDIIGYIEYITHQSR 544
C RP+ ++ Q +K GT TVC++ YG ++ + G Y+T R
Sbjct: 763 CHCRPSSRMECQTFKCGTHTVCQLKNGQYGCHPYGSATCSVYGDPHYLTFDGR 815
>sp|P96084|PIP_THEAC Proline iminopeptidase (PIP) (Prolyl aminopeptidase) (PAP) (Tricorn
protease interacting factor F1)
Length = 293
Score = 29.6 bits (65), Expect = 7.2
Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Frame = +2
Query: 128 MSSQYKDKVKEFGNDGNYDQ-NYQNCT----HTNREINPYWTVDLLNT-SYIDRVVIFNR 289
+ ++Y+D +K++G+ G+Y+ YQ H + + W ++L + Y +R ++
Sbjct: 148 LPAKYRDAIKKYGSSGSYENPEYQEAVNYFYHQHLLRSEDWPPEVLKSLEYAERRNVYRI 207
Query: 290 NDAKSERLVGAQIELLDETDSI 355
+ +E + I+ D TD I
Sbjct: 208 MNGPNEFTITGTIKDWDITDKI 229
>sp|O67685|YI24_AQUAE Hypothetical protein AQ_1824
Length = 355
Score = 29.6 bits (65), Expect = 7.2
Identities = 27/114 (23%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Frame = +2
Query: 299 KSERLVG-AQIELLDETDSIVHVCGSILKV------QSRNIIQCDKRPARKVRIQQYKNG 457
K ER G ++E DETD ++ GS+ K+ + + + P+ + +I YK+
Sbjct: 25 KKERFTGYIKVESWDETDYVILAEGSVKKIVRHKDNKKTFLDTSNYTPSSESKISVYKSS 84
Query: 458 TLT---VC-EVDVYGDSSPDIIGYIEYITH-QSRIADQEKRQNSNEIITISQLA 604
LT +C +++ + + + GY E I H + + + EK + + + ++ A
Sbjct: 85 PLTTAHICKDLNFFEYQTLSLSGYGEEIFHSELNLVNPEKLETFFQKVNLNGYA 138
>sp|P13423|PAG_BACAN Protective antigen precursor (PA) (PA-83) (PA83) (Anthrax toxins
translocating protein) [Contains: Protective antigen
PA-20 (PA20); Protective antigen PA-63 (PA63)]
Length = 764
Score = 29.3 bits (64), Expect = 9.4
Identities = 21/77 (27%), Positives = 36/77 (46%)
Frame = +2
Query: 59 DVYGDIASTINGAQLLSRSKPTSMSSQYKDKVKEFGNDGNYDQNYQNCTHTNREINPYWT 238
+V D +N + L K +Y DK+ + ++ NY N T N INP
Sbjct: 683 EVINDRYDMLNISSLRQDGKTFIDFKKYNDKLPLYISNPNYKVNVYAVTKENTIINPSEN 742
Query: 239 VDLLNTSYIDRVVIFNR 289
D +T+ I +++IF++
Sbjct: 743 GD-TSTNGIKKILIFSK 758
>sp|O42945|DHX15_SCHPO Probable pre-mRNA splicing factor RNA helicase prp43
Length = 735
Score = 29.3 bits (64), Expect = 9.4
Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
Frame = +2
Query: 2 ARKVRIQQYKNGTLTVCEVDVYGDIASTINGAQLLSRSKPTSMSSQYKDKVKEFGNDGNY 181
A+K Q+ KN L ++ D ++ L R+ + +++ ++ F ND +
Sbjct: 4 AQKKLRQESKNPYLA--HLNNGDDSEEVVSSKGLTRRATTVAQAAKAEEGPNNFFNDKPF 61
Query: 182 DQNYQNCTHTNREINPY-WTVDLLNTSYIDRVVIFNRNDAKSERLVGAQIELLDE 343
QNY T RE+ Y + L + +++++F + Q L DE
Sbjct: 62 SQNYFKILETRRELPVYQQREEFLKIYHENQIIVFVGETGSGKTTQIPQFVLYDE 116
>sp|Q8CP17|DNAK_STAES Chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa
protein) (HSP70)
Length = 609
Score = 29.3 bits (64), Expect = 9.4
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +2
Query: 209 TNREIN-PYWTVDLLNTSYIDRVVIFNRNDAKSERLVGAQIELLDETDSIVHVCGSILKV 385
TN+E N + L+ IDR+V +A++++ +++L +E DS+V +K
Sbjct: 463 TNKEQNITIQSSSSLSDEEIDRMVKDAEENAEADKKRREEVDLRNEADSLVFQVEKTVKD 522
Query: 386 QSRNIIQCDKRPARK 430
NI DK+ A +
Sbjct: 523 LGENISDEDKKNAEE 537
>sp|P50598|TOLQ_PSEAE Protein tolQ
Length = 231
Score = 29.3 bits (64), Expect = 9.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 263 IDRVVIFNRNDAKSERLVGAQIELLDETDSIVH 361
I V+ +NR A+SE L+G DE +I+H
Sbjct: 191 IPAVIAYNRFSARSEMLIGRYYTFADEFQAILH 223
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,520,669
Number of Sequences: 369166
Number of extensions: 1273370
Number of successful extensions: 3130
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3130
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5462583840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)