Planaria EST Database


DrC_01783

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01783
         (896 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P53629|ARE2_YEAST  Sterol O-acyltransferase 2 (Sterol-est...    32   3.1  
sp|P36435|MATK_SAXIN  Maturase K (Intron maturase)                 31   5.4  
sp|P06127|CD5_HUMAN  T-cell surface glycoprotein CD5 precurs...    30   7.0  
sp|P34290|YKO2_CAEEL  Hypothetical protein C05B5.2 in chromo...    30   7.0  
sp|P57631|HFLK_BUCAI  HflK protein                                 30   7.0  
sp|Q9UZ07|LEU21_PYRAB  3-isopropylmalate dehydratase large s...    30   9.1  
sp|Q8ZTV1|RS4_PYRAE  30S ribosomal protein S4P                     30   9.1  
sp|P09959|SWI6_YEAST  Regulatory protein SWI6 (Cell-cycle bo...    30   9.1  
>sp|P53629|ARE2_YEAST Sterol O-acyltransferase 2 (Sterol-ester synthase 2)
          Length = 642

 Score = 31.6 bits (70), Expect = 3.1
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = +1

Query: 340 KSSCLKYVNKILQSNHTSIVELQNEFCS-----QIFLERRQVFPDNISGNSFY 483
           KS+  KY + I        +E   EFCS     Q   ++ Q FP+NIS  SF+
Sbjct: 358 KSALAKYKDSINDPKVIGALEKSCEFCSFELSSQSLSDQTQKFPNNISAKSFF 410
>sp|P36435|MATK_SAXIN Maturase K (Intron maturase)
          Length = 505

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 38/188 (20%), Positives = 80/188 (42%), Gaps = 3/188 (1%)
 Frame = +1

Query: 52  DDFKYYQRMKYFVENEWKPLVVYRKVNKQIIPIKGNESLFGESLSDECLSTITKYTNSDS 231
           ++++ Y  +  F +N++    +Y  + ++ I    ++ +  + +  + LS    Y N  S
Sbjct: 2   EEYQGYLELNKFRQNDF----LYPLIFQEYIYALAHDQILKKCILSDNLS----YDNKSS 53

Query: 232 SQICNISDDCRNALLLQKGLKGYLVT--HQVLYTTIIQKSSCLKYVNKILQSNHTSIVEL 405
           S I          L+ Q     +L+   +     T +  +  L Y NK++      +VE+
Sbjct: 54  SLIVK-------RLITQMSQLNHLIISDNDSNQNTFLGHTKNLDYQNKMISEGFAVVVEI 106

Query: 406 QNEFCSQIFLERRQVFPDNISGNSFYNIIEILPEVQDLLLEQVFVCGSIGFMEFVDLKLL 585
           Q        LERR++    +   +  +I  I P ++D  L   +V   I     + L++L
Sbjct: 107 QFSLRLVFSLERREI----VKSQNLRSIHSIFPFLEDNFLHLNYV-SDILIPHPIHLEIL 161

Query: 586 -RTIMNWI 606
            +T+  W+
Sbjct: 162 VQTLRYWV 169
>sp|P06127|CD5_HUMAN T-cell surface glycoprotein CD5 precursor (Lymphocyte glycoprotein
           T1/Leu-1) (Lymphocyte antigen CD5)
          Length = 495

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 17/71 (23%), Positives = 33/71 (46%)
 Frame = +1

Query: 406 QNEFCSQIFLERRQVFPDNISGNSFYNIIEILPEVQDLLLEQVFVCGSIGFMEFVDLKLL 585
           +N +C ++F+  +   P  ++  +  +II  L     LL+  + VCG + + + V     
Sbjct: 356 RNSYCKKVFVTCQDPNPAGLAAGTVASIILALV----LLVVLLVVCGPLAYKKLVKKFRQ 411

Query: 586 RTIMNWISPNG 618
           +    WI P G
Sbjct: 412 KKQRQWIGPTG 422
>sp|P34290|YKO2_CAEEL Hypothetical protein C05B5.2 in chromosome III
          Length = 385

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 156 PFYRNYLFIDLSVYNERLPFIFNKVFHSLIIFKIIFL 46
           P  R   F+ L++   R+PF+F   F + II K IFL
Sbjct: 194 PVARRMTFLKLAIQVLRIPFLFFIAFRAFIIPKFIFL 230
>sp|P57631|HFLK_BUCAI HflK protein
          Length = 406

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 16/66 (24%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
 Frame = -1

Query: 281 CNSNAFRQSSEILQICEESEFVYFV--MVDKHSSLNDSPNKLSFPFIGIICLLTFLYTTR 108
           C+ N   + + +L I     F+Y +  ++ K +  ++S  K+++PF  II +  F++   
Sbjct: 26  CSDNKHEKKTTVLDI---KNFLYNLKNIITKKTDSSNSSKKITYPFSIIIFISFFIWGVS 82

Query: 107 GFHSFS 90
           GF++ +
Sbjct: 83  GFYTIT 88
>sp|Q9UZ07|LEU21_PYRAB 3-isopropylmalate dehydratase large subunit 1 (Isopropylmalate
           isomerase 1) (Alpha-IPM isomerase 1) (IPMI 1)
          Length = 423

 Score = 30.0 bits (66), Expect = 9.1
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +1

Query: 40  YIQKDDFKYYQRMKYFVENEWKPLVVYRKVNKQIIPI 150
           Y   +D KYY+ ++Y V N W+P+V +  + +  +PI
Sbjct: 249 YKSDEDAKYYKVIEYDVTN-WEPVVAFPHLPENTVPI 284
>sp|Q8ZTV1|RS4_PYRAE 30S ribosomal protein S4P
          Length = 159

 Score = 30.0 bits (66), Expect = 9.1
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +1

Query: 511 QDLLLEQVFVCGSIGFMEFVDLKLLRTIMNWISPNGCFKLSFAAENKTKFGRDILEEAYL 690
           + LLLE++ + G  G     +L L R  + WI+      LS  AE +        E+ Y 
Sbjct: 22  KQLLLEELQLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERAPLEMPFKEKLYK 81

Query: 691 NG 696
            G
Sbjct: 82  MG 83
>sp|P09959|SWI6_YEAST Regulatory protein SWI6 (Cell-cycle box factor, chain SWI6)
           (Trans-acting activator of HO endonuclease gene) (MBF
           subunit P90)
          Length = 803

 Score = 30.0 bits (66), Expect = 9.1
 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
 Frame = +1

Query: 154 GNESLFGESLSDECLSTITKYTNS-DSSQICNISDDCRNALLLQKGLKGYLVTHQVLYTT 330
           G+  L+G+++ + CL    K  N+ DS     + D     L+L+  +   ++ H ++ + 
Sbjct: 341 GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSG 400

Query: 331 IIQKSSCLKYVNKILQSNHTSIVELQN 411
           +   S+  KY   IL      IV+ QN
Sbjct: 401 MTGCSAAAKYYLDILMG---WIVKKQN 424
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,156,632
Number of Sequences: 369166
Number of extensions: 2028639
Number of successful extensions: 5431
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5429
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9030416440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)