Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_B13
(896 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P53629|ARE2_YEAST Sterol O-acyltransferase 2 (Sterol-est... 32 3.1
sp|P36435|MATK_SAXIN Maturase K (Intron maturase) 31 5.4
sp|P06127|CD5_HUMAN T-cell surface glycoprotein CD5 precurs... 30 7.0
sp|P34290|YKO2_CAEEL Hypothetical protein C05B5.2 in chromo... 30 7.0
sp|P57631|HFLK_BUCAI HflK protein 30 7.0
sp|Q9UZ07|LEU21_PYRAB 3-isopropylmalate dehydratase large s... 30 9.1
sp|Q8ZTV1|RS4_PYRAE 30S ribosomal protein S4P 30 9.1
sp|P09959|SWI6_YEAST Regulatory protein SWI6 (Cell-cycle bo... 30 9.1
>sp|P53629|ARE2_YEAST Sterol O-acyltransferase 2 (Sterol-ester synthase 2)
Length = 642
Score = 31.6 bits (70), Expect = 3.1
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = +1
Query: 340 KSSCLKYVNKILQSNHTSIVELQNEFCS-----QIFLERRQVFPDNISGNSFY 483
KS+ KY + I +E EFCS Q ++ Q FP+NIS SF+
Sbjct: 358 KSALAKYKDSINDPKVIGALEKSCEFCSFELSSQSLSDQTQKFPNNISAKSFF 410
>sp|P36435|MATK_SAXIN Maturase K (Intron maturase)
Length = 505
Score = 30.8 bits (68), Expect = 5.4
Identities = 38/188 (20%), Positives = 80/188 (42%), Gaps = 3/188 (1%)
Frame = +1
Query: 52 DDFKYYQRMKYFVENEWKPLVVYRKVNKQIIPIKGNESLFGESLSDECLSTITKYTNSDS 231
++++ Y + F +N++ +Y + ++ I ++ + + + + LS Y N S
Sbjct: 2 EEYQGYLELNKFRQNDF----LYPLIFQEYIYALAHDQILKKCILSDNLS----YDNKSS 53
Query: 232 SQICNISDDCRNALLLQKGLKGYLVT--HQVLYTTIIQKSSCLKYVNKILQSNHTSIVEL 405
S I L+ Q +L+ + T + + L Y NK++ +VE+
Sbjct: 54 SLIVK-------RLITQMSQLNHLIISDNDSNQNTFLGHTKNLDYQNKMISEGFAVVVEI 106
Query: 406 QNEFCSQIFLERRQVFPDNISGNSFYNIIEILPEVQDLLLEQVFVCGSIGFMEFVDLKLL 585
Q LERR++ + + +I I P ++D L +V I + L++L
Sbjct: 107 QFSLRLVFSLERREI----VKSQNLRSIHSIFPFLEDNFLHLNYV-SDILIPHPIHLEIL 161
Query: 586 -RTIMNWI 606
+T+ W+
Sbjct: 162 VQTLRYWV 169
>sp|P06127|CD5_HUMAN T-cell surface glycoprotein CD5 precursor (Lymphocyte glycoprotein
T1/Leu-1) (Lymphocyte antigen CD5)
Length = 495
Score = 30.4 bits (67), Expect = 7.0
Identities = 17/71 (23%), Positives = 33/71 (46%)
Frame = +1
Query: 406 QNEFCSQIFLERRQVFPDNISGNSFYNIIEILPEVQDLLLEQVFVCGSIGFMEFVDLKLL 585
+N +C ++F+ + P ++ + +II L LL+ + VCG + + + V
Sbjct: 356 RNSYCKKVFVTCQDPNPAGLAAGTVASIILALV----LLVVLLVVCGPLAYKKLVKKFRQ 411
Query: 586 RTIMNWISPNG 618
+ WI P G
Sbjct: 412 KKQRQWIGPTG 422
>sp|P34290|YKO2_CAEEL Hypothetical protein C05B5.2 in chromosome III
Length = 385
Score = 30.4 bits (67), Expect = 7.0
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 156 PFYRNYLFIDLSVYNERLPFIFNKVFHSLIIFKIIFL 46
P R F+ L++ R+PF+F F + II K IFL
Sbjct: 194 PVARRMTFLKLAIQVLRIPFLFFIAFRAFIIPKFIFL 230
>sp|P57631|HFLK_BUCAI HflK protein
Length = 406
Score = 30.4 bits (67), Expect = 7.0
Identities = 16/66 (24%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = -1
Query: 281 CNSNAFRQSSEILQICEESEFVYFV--MVDKHSSLNDSPNKLSFPFIGIICLLTFLYTTR 108
C+ N + + +L I F+Y + ++ K + ++S K+++PF II + F++
Sbjct: 26 CSDNKHEKKTTVLDI---KNFLYNLKNIITKKTDSSNSSKKITYPFSIIIFISFFIWGVS 82
Query: 107 GFHSFS 90
GF++ +
Sbjct: 83 GFYTIT 88
>sp|Q9UZ07|LEU21_PYRAB 3-isopropylmalate dehydratase large subunit 1 (Isopropylmalate
isomerase 1) (Alpha-IPM isomerase 1) (IPMI 1)
Length = 423
Score = 30.0 bits (66), Expect = 9.1
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +1
Query: 40 YIQKDDFKYYQRMKYFVENEWKPLVVYRKVNKQIIPI 150
Y +D KYY+ ++Y V N W+P+V + + + +PI
Sbjct: 249 YKSDEDAKYYKVIEYDVTN-WEPVVAFPHLPENTVPI 284
>sp|Q8ZTV1|RS4_PYRAE 30S ribosomal protein S4P
Length = 159
Score = 30.0 bits (66), Expect = 9.1
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = +1
Query: 511 QDLLLEQVFVCGSIGFMEFVDLKLLRTIMNWISPNGCFKLSFAAENKTKFGRDILEEAYL 690
+ LLLE++ + G G +L L R + WI+ LS AE + E+ Y
Sbjct: 22 KQLLLEELQLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERAPLEMPFKEKLYK 81
Query: 691 NG 696
G
Sbjct: 82 MG 83
>sp|P09959|SWI6_YEAST Regulatory protein SWI6 (Cell-cycle box factor, chain SWI6)
(Trans-acting activator of HO endonuclease gene) (MBF
subunit P90)
Length = 803
Score = 30.0 bits (66), Expect = 9.1
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +1
Query: 154 GNESLFGESLSDECLSTITKYTNS-DSSQICNISDDCRNALLLQKGLKGYLVTHQVLYTT 330
G+ L+G+++ + CL K N+ DS + D L+L+ + ++ H ++ +
Sbjct: 341 GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSG 400
Query: 331 IIQKSSCLKYVNKILQSNHTSIVELQN 411
+ S+ KY IL IV+ QN
Sbjct: 401 MTGCSAAAKYYLDILMG---WIVKKQN 424
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,156,632
Number of Sequences: 369166
Number of extensions: 2028639
Number of successful extensions: 5431
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5429
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9030416440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)