Planaria EST Database


DrC_01780

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01780
         (589 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O00180|KCNK1_HUMAN  Potassium channel subfamily K member ...    30   4.5  
sp|O08581|KCNK1_MOUSE  Potassium channel subfamily K member ...    30   4.5  
sp|P32739|NAD2_CAEEL  Sodium-dependent high-affinity dicarbo...    29   7.6  
sp|P20923|FRDC_PROVU  Fumarate reductase subunit C (Fumarate...    29   7.6  
sp|Q94RJ2|NU5M_CHIMO  NADH-ubiquinone oxidoreductase chain 5...    29   7.6  
sp|P63762|FTWH_MYCTU  Hypothetical ftsW-like protein Rv2154c...    29   9.9  
>sp|O00180|KCNK1_HUMAN Potassium channel subfamily K member 1 (Inward rectifying potassium
           channel protein TWIK-1) (Potassium channel KCNO1)
          Length = 336

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
 Frame = +2

Query: 38  EQNSCTFKNNTDQFLVTTIFIQSDGVLVSYGSTFVGLWGGVICMFFGMTVLT----GCSR 205
           E++ C  +   +QFL   +   + GV V   ++    W     +FF  TVL+    G + 
Sbjct: 65  EEHECLSEQQLEQFLGRVLEASNYGVSVLSNASGNWNWDFTSALFFASTVLSTTGYGHTV 124

Query: 206 KIVNLGFFLNFVAMLIMVPAVILSVIQLIAWFTVPVLTWNLIDLYFYVR 352
            + + G     +  +I +P  +L +  ++   TV V    +  LYF++R
Sbjct: 125 PLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVHVTRRPV--LYFHIR 171
>sp|O08581|KCNK1_MOUSE Potassium channel subfamily K member 1 (Inward rectifying potassium
           channel protein TWIK-1)
          Length = 336

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
 Frame = +2

Query: 38  EQNSCTFKNNTDQFLVTTIFIQSDGVLVSYGSTFVGLWGGVICMFFGMTVLT----GCSR 205
           E++ C  +   +QFL   +   + GV V   ++    W     +FF  TVL+    G + 
Sbjct: 65  EEHECLSEPQLEQFLGRVLEASNYGVSVLSNASGNWNWDFTSALFFASTVLSTTGYGHTV 124

Query: 206 KIVNLGFFLNFVAMLIMVPAVILSVIQLIAWFTVPVLTWNLIDLYFYVR 352
            + + G     +  +I +P  +L +  L+   TV V    +  LYF++R
Sbjct: 125 PLSDGGKAFCIIYSVIGIPFTLLFLTALVQRVTVHVTRRPV--LYFHIR 171
>sp|P32739|NAD2_CAEEL Sodium-dependent high-affinity dicarboxylate transporter 2
           (Na(+)/dicarboxylate cotransporter 2) (NaDC-2) (ceNaDC2)
          Length = 551

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 17/113 (15%)
 Frame = -2

Query: 291 IS*ITLRITAGTIISIATKFKKNPKL-TIFLE-----------HPVSTVIPKNMQ----- 163
           +S + L++T  TII I T+F  N    +IF+            HP+   +P  +      
Sbjct: 421 MSSLPLQLTVTTIIVIMTEFASNVSTGSIFIPISLGVAESMGVHPLYLALPTTVACSFAF 480

Query: 162 ITPPHKPTNVLPYETNTPSD*MKIVVTKN*SVLFLNVQEFCSHLIITSLSMNT 4
           + P   P N + Y+T   S    IV         LN+    + ++ITSL+MNT
Sbjct: 481 MLPISTPPNAVVYDTKVISMVEMIVCG-----FLLNI----ACILITSLNMNT 524
>sp|P20923|FRDC_PROVU Fumarate reductase subunit C (Fumarate reductase 15 kDa hydrophobic
           protein)
          Length = 131

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 16/68 (23%), Positives = 29/68 (42%)
 Frame = +2

Query: 128 GSTFVGLWGGVICMFFGMTVLTGCSRKIVNLGFFLNFVAMLIMVPAVILSVIQLIAWFTV 307
           G+    LW  ++ +F    +  G       +GF  N + MLI +  +I +V     WF +
Sbjct: 31  GTCLPQLWFSLVVLFGVFALKNGPESWAGFVGFLSNPILMLINIVTLIATVFHTATWFKL 90

Query: 308 PVLTWNLI 331
                N++
Sbjct: 91  APKAVNIV 98
>sp|Q94RJ2|NU5M_CHIMO NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
           5)
          Length = 612

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +2

Query: 161 ICMFFGMTVLTGCSRKIVNLGFFLNFVAMLIMVPAVILSVIQLIAWFTVPVLTWNL---I 331
           +C  F    L   ++  + L FF++ + + + +   I ++I  I+W  +P+   NL    
Sbjct: 24  LCQKFFDKNLEKHTKWAIKLSFFISLIPLTLFIDQGIQTIIMNISWIHLPLFNINLSFKF 83

Query: 332 DLY 340
           D+Y
Sbjct: 84  DMY 86
>sp|P63762|FTWH_MYCTU Hypothetical ftsW-like protein Rv2154c/MT2213
 sp|P63763|FTWH_MYCBO Hypothetical ftsW-like protein Mb2178c
          Length = 524

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +2

Query: 134 TFVGLWGGVICMFFGMTVLTGCSRKIVNLGFFLNFVAM-LIMVPAVILSVIQLIAWFTV 307
           T VGL GG +C+   +  +    R+I   GF +  V + L++VP +         WF V
Sbjct: 101 TLVGLIGGYVCLRMSVRFM----RRIAFSGFAITIVMLVLVLVPGIGKEANGSRGWFVV 155
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,415,979
Number of Sequences: 369166
Number of extensions: 1123176
Number of successful extensions: 2951
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2951
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4406202450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)