Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_A11
(589 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O00180|KCNK1_HUMAN Potassium channel subfamily K member ... 30 4.5
sp|O08581|KCNK1_MOUSE Potassium channel subfamily K member ... 30 4.5
sp|P32739|NAD2_CAEEL Sodium-dependent high-affinity dicarbo... 29 7.6
sp|P20923|FRDC_PROVU Fumarate reductase subunit C (Fumarate... 29 7.6
sp|Q94RJ2|NU5M_CHIMO NADH-ubiquinone oxidoreductase chain 5... 29 7.6
sp|P63762|FTWH_MYCTU Hypothetical ftsW-like protein Rv2154c... 29 9.9
>sp|O00180|KCNK1_HUMAN Potassium channel subfamily K member 1 (Inward rectifying potassium
channel protein TWIK-1) (Potassium channel KCNO1)
Length = 336
Score = 30.0 bits (66), Expect = 4.5
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Frame = +2
Query: 38 EQNSCTFKNNTDQFLVTTIFIQSDGVLVSYGSTFVGLWGGVICMFFGMTVLT----GCSR 205
E++ C + +QFL + + GV V ++ W +FF TVL+ G +
Sbjct: 65 EEHECLSEQQLEQFLGRVLEASNYGVSVLSNASGNWNWDFTSALFFASTVLSTTGYGHTV 124
Query: 206 KIVNLGFFLNFVAMLIMVPAVILSVIQLIAWFTVPVLTWNLIDLYFYVR 352
+ + G + +I +P +L + ++ TV V + LYF++R
Sbjct: 125 PLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVHVTRRPV--LYFHIR 171
>sp|O08581|KCNK1_MOUSE Potassium channel subfamily K member 1 (Inward rectifying potassium
channel protein TWIK-1)
Length = 336
Score = 30.0 bits (66), Expect = 4.5
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Frame = +2
Query: 38 EQNSCTFKNNTDQFLVTTIFIQSDGVLVSYGSTFVGLWGGVICMFFGMTVLT----GCSR 205
E++ C + +QFL + + GV V ++ W +FF TVL+ G +
Sbjct: 65 EEHECLSEPQLEQFLGRVLEASNYGVSVLSNASGNWNWDFTSALFFASTVLSTTGYGHTV 124
Query: 206 KIVNLGFFLNFVAMLIMVPAVILSVIQLIAWFTVPVLTWNLIDLYFYVR 352
+ + G + +I +P +L + L+ TV V + LYF++R
Sbjct: 125 PLSDGGKAFCIIYSVIGIPFTLLFLTALVQRVTVHVTRRPV--LYFHIR 171
>sp|P32739|NAD2_CAEEL Sodium-dependent high-affinity dicarboxylate transporter 2
(Na(+)/dicarboxylate cotransporter 2) (NaDC-2) (ceNaDC2)
Length = 551
Score = 29.3 bits (64), Expect = 7.6
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 17/113 (15%)
Frame = -2
Query: 291 IS*ITLRITAGTIISIATKFKKNPKL-TIFLE-----------HPVSTVIPKNMQ----- 163
+S + L++T TII I T+F N +IF+ HP+ +P +
Sbjct: 421 MSSLPLQLTVTTIIVIMTEFASNVSTGSIFIPISLGVAESMGVHPLYLALPTTVACSFAF 480
Query: 162 ITPPHKPTNVLPYETNTPSD*MKIVVTKN*SVLFLNVQEFCSHLIITSLSMNT 4
+ P P N + Y+T S IV LN+ + ++ITSL+MNT
Sbjct: 481 MLPISTPPNAVVYDTKVISMVEMIVCG-----FLLNI----ACILITSLNMNT 524
>sp|P20923|FRDC_PROVU Fumarate reductase subunit C (Fumarate reductase 15 kDa hydrophobic
protein)
Length = 131
Score = 29.3 bits (64), Expect = 7.6
Identities = 16/68 (23%), Positives = 29/68 (42%)
Frame = +2
Query: 128 GSTFVGLWGGVICMFFGMTVLTGCSRKIVNLGFFLNFVAMLIMVPAVILSVIQLIAWFTV 307
G+ LW ++ +F + G +GF N + MLI + +I +V WF +
Sbjct: 31 GTCLPQLWFSLVVLFGVFALKNGPESWAGFVGFLSNPILMLINIVTLIATVFHTATWFKL 90
Query: 308 PVLTWNLI 331
N++
Sbjct: 91 APKAVNIV 98
>sp|Q94RJ2|NU5M_CHIMO NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
5)
Length = 612
Score = 29.3 bits (64), Expect = 7.6
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +2
Query: 161 ICMFFGMTVLTGCSRKIVNLGFFLNFVAMLIMVPAVILSVIQLIAWFTVPVLTWNL---I 331
+C F L ++ + L FF++ + + + + I ++I I+W +P+ NL
Sbjct: 24 LCQKFFDKNLEKHTKWAIKLSFFISLIPLTLFIDQGIQTIIMNISWIHLPLFNINLSFKF 83
Query: 332 DLY 340
D+Y
Sbjct: 84 DMY 86
>sp|P63762|FTWH_MYCTU Hypothetical ftsW-like protein Rv2154c/MT2213
sp|P63763|FTWH_MYCBO Hypothetical ftsW-like protein Mb2178c
Length = 524
Score = 28.9 bits (63), Expect = 9.9
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +2
Query: 134 TFVGLWGGVICMFFGMTVLTGCSRKIVNLGFFLNFVAM-LIMVPAVILSVIQLIAWFTV 307
T VGL GG +C+ + + R+I GF + V + L++VP + WF V
Sbjct: 101 TLVGLIGGYVCLRMSVRFM----RRIAFSGFAITIVMLVLVLVPGIGKEANGSRGWFVV 155
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,415,979
Number of Sequences: 369166
Number of extensions: 1123176
Number of successful extensions: 2951
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2951
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4406202450
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)