Planaria EST Database


DrC_01774

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01774
         (706 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q09227|YP89_CAEEL  Hypothetical protein C08B11.9 in chrom...   110   4e-24
sp|P43432|IL12B_MOUSE  Interleukin-12 beta chain precursor (...    36   0.11 
sp|Q8CNW5|EZRA_STAES  Septation ring formation regulator ezrA      34   0.43 
sp|P25805|CYSP_PLAFA  Trophozoite cysteine proteinase precur...    33   0.96 
sp|Q9UVG6|VPS15_PICPA  Putative serine/threonine-protein kin...    32   1.3  
sp|P18177|TOXB_CLODI  Toxin B                                      32   1.6  
sp|O51221|HFLK_BORBU  HflK protein                                 31   2.8  
sp|Q50327|ATPF_MYCPN  ATP synthase B chain precursor               30   4.8  
sp|P59583|WRK32_ARATH  Probable WRKY transcription factor 32...    30   6.2  
sp|Q59051|YG57_METJA  Putative protease MJ1657                     30   8.2  
>sp|Q09227|YP89_CAEEL Hypothetical protein C08B11.9 in chromosome II (1207-1)
          Length = 186

 Score =  110 bits (275), Expect = 4e-24
 Identities = 58/128 (45%), Positives = 81/128 (63%), Gaps = 2/128 (1%)
 Frame = +1

Query: 175 DDLVELAIQVQSSNKFVNENASSKLKEIVDQMQYLRNKAVEILKEAKRDCDLHNVKCNFI 354
           DDLV LA Q+ S+ + V   A  +LK+I DQM+ L   A  +L++A+RD  LHNV CN  
Sbjct: 44  DDLVALANQLNSARQLVKGRACDRLKQIADQMEQLHMAARAVLEDAQRDEHLHNVPCNME 103

Query: 355 KKPGSTYYLYQRTNG-DKYFSMISPEEWG-SSMPNSFVGSYRLENDHSWTSSENIVQRNE 528
           K+PG  Y+LYQ+    +KYFSM++P EWG       ++GSYRLE D SWT    + + + 
Sbjct: 104 KQPGRIYHLYQKQGSMNKYFSMLAPNEWGYQEKKEEYLGSYRLEYDRSWTP---VGEMDR 160

Query: 529 KDELIKRI 552
           KDE + R+
Sbjct: 161 KDEEVARL 168
>sp|P43432|IL12B_MOUSE Interleukin-12 beta chain precursor (IL-12B) (Cytotoxic lymphocyte
           maturation factor 40 kDa subunit) (CLMF p40)
          Length = 335

 Score = 35.8 bits (81), Expect = 0.11
 Identities = 21/71 (29%), Positives = 44/71 (61%), Gaps = 9/71 (12%)
 Frame = +1

Query: 115 RKDFMEYSVNVR-NATKPSSPDDL-VELAIQVQSSNKFVNENASSKLKEIVD-------Q 267
           ++D+ +YSV+ + + T P++ + L +ELA++ +  NK+ N + S  +++I+        Q
Sbjct: 181 QRDYEKYSVSCQEDVTCPTAEETLPIELALEARQQNKYENYSTSFFIRDIIKPDPPKNLQ 240

Query: 268 MQYLRNKAVEI 300
           M+ L+N  VE+
Sbjct: 241 MKPLKNSQVEV 251
>sp|Q8CNW5|EZRA_STAES Septation ring formation regulator ezrA
          Length = 564

 Score = 33.9 bits (76), Expect = 0.43
 Identities = 33/161 (20%), Positives = 73/161 (45%), Gaps = 12/161 (7%)
 Frame = +1

Query: 121 DFMEYSVNVRNA---TKPSSPDDL---------VELAIQVQSSNKFVNENASSKLKEIVD 264
           D +EY V  +N    TK    DDL         ++  I+    N ++NE+ +  +++  +
Sbjct: 296 DLIEYEVKAKNEVEETKDIITDDLFKAKDMNYTLQTEIEYVRENYYINESDAQSVRQFEN 355

Query: 265 QMQYLRNKAVEILKEAKRDCDLHNVKCNFIKKPGSTYYLYQRTNGDKYFSMISPEEWGSS 444
           ++Q L +   +ILKE  +          + +   +  YL      + + S+I+ E+    
Sbjct: 356 EIQSLISVYDDILKETSKSA------VRYSEVQDNLQYL------EDHVSVINKEQ--DK 401

Query: 445 MPNSFVGSYRLENDHSWTSSENIVQRNEKDELIKRIIDSDL 567
           + N  +   +L  D +      +  +++K+E+ +R++ S+L
Sbjct: 402 LQNHLI---QLREDEAEAEDNLLRVQSKKEEVYRRLLASNL 439
>sp|P25805|CYSP_PLAFA Trophozoite cysteine proteinase precursor (TCP)
          Length = 569

 Score = 32.7 bits (73), Expect = 0.96
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = +1

Query: 142 NVRNATKPSSPDDLVELA-IQVQSSNKFVNENASSKLKEIVDQMQYLRNKAVEILKEAKR 318
           N++N +  S  ++ + L  I ++   KF+NEN     KE+ + +  L      IL+E K 
Sbjct: 124 NIKNDSIKSKKEEYINLERILLEKYKKFINENNEENRKELSNILHKLLEINKLILREEKD 183

Query: 319 DCDLHNVKCNFIKK 360
           D  ++ +  N+ +K
Sbjct: 184 DKKVYLINDNYDEK 197
>sp|Q9UVG6|VPS15_PICPA Putative serine/threonine-protein kinase VPS15 (Vacuolar protein
           sorting protein 15)
          Length = 1340

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 19/98 (19%), Positives = 45/98 (45%)
 Frame = +1

Query: 223 VNENASSKLKEIVDQMQYLRNKAVEILKEAKRDCDLHNVKCNFIKKPGSTYYLYQRTNGD 402
           V  N+   L E V+++++LR K +++      +  + +V+  ++ +P     LY+R +  
Sbjct: 57  VKPNSGLDLSEWVEKLEFLRLKLLDVPNVIPYNLVIDSVRAGYLIRPFQQRTLYERVSIQ 116

Query: 403 KYFSMISPEEWGSSMPNSFVGSYRLENDHSWTSSENIV 516
            Y   I  +     + ++ +  +     H    SEN++
Sbjct: 117 PYLEPIEKKWIAFQLIHAVMECHERGQYHGDIKSENVL 154
>sp|P18177|TOXB_CLODI Toxin B
          Length = 2366

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 25/108 (23%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
 Frame = +1

Query: 70  FNKFYNKPLLINFNKRKDFMEYSVNVRNATKPSSPDDLVELAIQVQSSNKFVNENASSKL 249
           +NKF+ K + I ++K+K+F    +N   A +  +P+ +++  ++   SN++         
Sbjct: 168 YNKFFRKRMEIIYDKQKNF----INYYKAQREENPELIIDDIVKTYLSNEY--------S 215

Query: 250 KEIVDQMQYLRNKAVEILKEAKRDCDLHNVKCNFIK-KPGSTYYLYQR 390
           KEI +   Y+     +I + +  D        NF + K G ++ LY++
Sbjct: 216 KEIDELNTYIEESLNKITQNSGNDVR------NFEEFKNGESFNLYEQ 257
>sp|O51221|HFLK_BORBU HflK protein
          Length = 311

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 19/76 (25%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
 Frame = +1

Query: 94  LLINFNKRKDFMEYSVNVRNATKPSSP--DDLVELAIQVQSSNKFVNENASSKLKEIVDQ 267
           ++ N+N   D ++  V +RNA  P     +   ++ I +Q  NK++NE      KE    
Sbjct: 175 IIDNYNLGIDVVQ--VQIRNALPPKGKVYEAFEDVNIAIQDKNKYINEGR----KEFNQI 228

Query: 268 MQYLRNKAVEILKEAK 315
           +  ++ +A+++++EA+
Sbjct: 229 VPKIKGEALKVIEEAR 244
>sp|Q50327|ATPF_MYCPN ATP synthase B chain precursor
          Length = 207

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
 Frame = +1

Query: 88  KPLLINFNKRKDFMEYSVNVRNATKPSSPDDLVELAIQVQSSNKFVNENASSKLKEIVDQ 267
           KP     N+RK  +E  VN  N+ +  +       A+  Q++ +  +EN+    KEIVDQ
Sbjct: 71  KPTQKFLNQRKALLEEQVNQANSLEQQAQ------ALLQQANQR--HENSLVVAKEIVDQ 122

Query: 268 MQY--LRNKAVEILKEAKRDCDL 330
             Y  L+ K+ EI K+A R  +L
Sbjct: 123 ANYEALQLKS-EIEKKANRQANL 144
>sp|P59583|WRK32_ARATH Probable WRKY transcription factor 32 (WRKY DNA-binding protein 32)
          Length = 466

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
 Frame = +1

Query: 112 KRKDFMEYSVNVRNATKPSSPDDLVELAIQVQSSNKFVNENASSKLKE---IVDQMQYLR 282
           ++  F    + V  A +P S DD V   + +  S    + +    + E   +VD+ ++  
Sbjct: 227 RKTSFSpreIRVTTAIRPVSEDDTVVEELSIVPSGSDPSASTKEYICESQTLVDRKRHCE 286

Query: 283 NKAVEILKEAKRDCDLHNVKCNFIKKPGSTYYLYQRTNGD 402
           N+AVE  +  +R    ++   + + KPG          GD
Sbjct: 287 NEAVEEPEPKRRLKKDNSQSSDSVSKPGKKNKFVVHAAGD 326
>sp|Q59051|YG57_METJA Putative protease MJ1657
          Length = 332

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
 Frame = +1

Query: 214 NKFVNENASSKLKEIVD------QMQYLRNKAVEILKEAKRDCDLHNVKCNFIKK 360
           N ++NE     L E++D         YL N+A++   E  + C+    KCNF K+
Sbjct: 268 NAYLNERWDGNLMELLDCpreLEHFYYLDNRALDGAIEYWKSCNKLCSKCNFCKE 322
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,800,182
Number of Sequences: 369166
Number of extensions: 1264101
Number of successful extensions: 3587
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3583
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6170718545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)