Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_O24
(706 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q09227|YP89_CAEEL Hypothetical protein C08B11.9 in chrom... 110 4e-24
sp|P43432|IL12B_MOUSE Interleukin-12 beta chain precursor (... 36 0.11
sp|Q8CNW5|EZRA_STAES Septation ring formation regulator ezrA 34 0.43
sp|P25805|CYSP_PLAFA Trophozoite cysteine proteinase precur... 33 0.96
sp|Q9UVG6|VPS15_PICPA Putative serine/threonine-protein kin... 32 1.3
sp|P18177|TOXB_CLODI Toxin B 32 1.6
sp|O51221|HFLK_BORBU HflK protein 31 2.8
sp|Q50327|ATPF_MYCPN ATP synthase B chain precursor 30 4.8
sp|P59583|WRK32_ARATH Probable WRKY transcription factor 32... 30 6.2
sp|Q59051|YG57_METJA Putative protease MJ1657 30 8.2
>sp|Q09227|YP89_CAEEL Hypothetical protein C08B11.9 in chromosome II (1207-1)
Length = 186
Score = 110 bits (275), Expect = 4e-24
Identities = 58/128 (45%), Positives = 81/128 (63%), Gaps = 2/128 (1%)
Frame = +1
Query: 175 DDLVELAIQVQSSNKFVNENASSKLKEIVDQMQYLRNKAVEILKEAKRDCDLHNVKCNFI 354
DDLV LA Q+ S+ + V A +LK+I DQM+ L A +L++A+RD LHNV CN
Sbjct: 44 DDLVALANQLNSARQLVKGRACDRLKQIADQMEQLHMAARAVLEDAQRDEHLHNVPCNME 103
Query: 355 KKPGSTYYLYQRTNG-DKYFSMISPEEWG-SSMPNSFVGSYRLENDHSWTSSENIVQRNE 528
K+PG Y+LYQ+ +KYFSM++P EWG ++GSYRLE D SWT + + +
Sbjct: 104 KQPGRIYHLYQKQGSMNKYFSMLAPNEWGYQEKKEEYLGSYRLEYDRSWTP---VGEMDR 160
Query: 529 KDELIKRI 552
KDE + R+
Sbjct: 161 KDEEVARL 168
>sp|P43432|IL12B_MOUSE Interleukin-12 beta chain precursor (IL-12B) (Cytotoxic lymphocyte
maturation factor 40 kDa subunit) (CLMF p40)
Length = 335
Score = 35.8 bits (81), Expect = 0.11
Identities = 21/71 (29%), Positives = 44/71 (61%), Gaps = 9/71 (12%)
Frame = +1
Query: 115 RKDFMEYSVNVR-NATKPSSPDDL-VELAIQVQSSNKFVNENASSKLKEIVD-------Q 267
++D+ +YSV+ + + T P++ + L +ELA++ + NK+ N + S +++I+ Q
Sbjct: 181 QRDYEKYSVSCQEDVTCPTAEETLPIELALEARQQNKYENYSTSFFIRDIIKPDPPKNLQ 240
Query: 268 MQYLRNKAVEI 300
M+ L+N VE+
Sbjct: 241 MKPLKNSQVEV 251
>sp|Q8CNW5|EZRA_STAES Septation ring formation regulator ezrA
Length = 564
Score = 33.9 bits (76), Expect = 0.43
Identities = 33/161 (20%), Positives = 73/161 (45%), Gaps = 12/161 (7%)
Frame = +1
Query: 121 DFMEYSVNVRNA---TKPSSPDDL---------VELAIQVQSSNKFVNENASSKLKEIVD 264
D +EY V +N TK DDL ++ I+ N ++NE+ + +++ +
Sbjct: 296 DLIEYEVKAKNEVEETKDIITDDLFKAKDMNYTLQTEIEYVRENYYINESDAQSVRQFEN 355
Query: 265 QMQYLRNKAVEILKEAKRDCDLHNVKCNFIKKPGSTYYLYQRTNGDKYFSMISPEEWGSS 444
++Q L + +ILKE + + + + YL + + S+I+ E+
Sbjct: 356 EIQSLISVYDDILKETSKSA------VRYSEVQDNLQYL------EDHVSVINKEQ--DK 401
Query: 445 MPNSFVGSYRLENDHSWTSSENIVQRNEKDELIKRIIDSDL 567
+ N + +L D + + +++K+E+ +R++ S+L
Sbjct: 402 LQNHLI---QLREDEAEAEDNLLRVQSKKEEVYRRLLASNL 439
>sp|P25805|CYSP_PLAFA Trophozoite cysteine proteinase precursor (TCP)
Length = 569
Score = 32.7 bits (73), Expect = 0.96
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +1
Query: 142 NVRNATKPSSPDDLVELA-IQVQSSNKFVNENASSKLKEIVDQMQYLRNKAVEILKEAKR 318
N++N + S ++ + L I ++ KF+NEN KE+ + + L IL+E K
Sbjct: 124 NIKNDSIKSKKEEYINLERILLEKYKKFINENNEENRKELSNILHKLLEINKLILREEKD 183
Query: 319 DCDLHNVKCNFIKK 360
D ++ + N+ +K
Sbjct: 184 DKKVYLINDNYDEK 197
>sp|Q9UVG6|VPS15_PICPA Putative serine/threonine-protein kinase VPS15 (Vacuolar protein
sorting protein 15)
Length = 1340
Score = 32.3 bits (72), Expect = 1.3
Identities = 19/98 (19%), Positives = 45/98 (45%)
Frame = +1
Query: 223 VNENASSKLKEIVDQMQYLRNKAVEILKEAKRDCDLHNVKCNFIKKPGSTYYLYQRTNGD 402
V N+ L E V+++++LR K +++ + + +V+ ++ +P LY+R +
Sbjct: 57 VKPNSGLDLSEWVEKLEFLRLKLLDVPNVIPYNLVIDSVRAGYLIRPFQQRTLYERVSIQ 116
Query: 403 KYFSMISPEEWGSSMPNSFVGSYRLENDHSWTSSENIV 516
Y I + + ++ + + H SEN++
Sbjct: 117 PYLEPIEKKWIAFQLIHAVMECHERGQYHGDIKSENVL 154
>sp|P18177|TOXB_CLODI Toxin B
Length = 2366
Score = 32.0 bits (71), Expect = 1.6
Identities = 25/108 (23%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Frame = +1
Query: 70 FNKFYNKPLLINFNKRKDFMEYSVNVRNATKPSSPDDLVELAIQVQSSNKFVNENASSKL 249
+NKF+ K + I ++K+K+F +N A + +P+ +++ ++ SN++
Sbjct: 168 YNKFFRKRMEIIYDKQKNF----INYYKAQREENPELIIDDIVKTYLSNEY--------S 215
Query: 250 KEIVDQMQYLRNKAVEILKEAKRDCDLHNVKCNFIK-KPGSTYYLYQR 390
KEI + Y+ +I + + D NF + K G ++ LY++
Sbjct: 216 KEIDELNTYIEESLNKITQNSGNDVR------NFEEFKNGESFNLYEQ 257
>sp|O51221|HFLK_BORBU HflK protein
Length = 311
Score = 31.2 bits (69), Expect = 2.8
Identities = 19/76 (25%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +1
Query: 94 LLINFNKRKDFMEYSVNVRNATKPSSP--DDLVELAIQVQSSNKFVNENASSKLKEIVDQ 267
++ N+N D ++ V +RNA P + ++ I +Q NK++NE KE
Sbjct: 175 IIDNYNLGIDVVQ--VQIRNALPPKGKVYEAFEDVNIAIQDKNKYINEGR----KEFNQI 228
Query: 268 MQYLRNKAVEILKEAK 315
+ ++ +A+++++EA+
Sbjct: 229 VPKIKGEALKVIEEAR 244
>sp|Q50327|ATPF_MYCPN ATP synthase B chain precursor
Length = 207
Score = 30.4 bits (67), Expect = 4.8
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Frame = +1
Query: 88 KPLLINFNKRKDFMEYSVNVRNATKPSSPDDLVELAIQVQSSNKFVNENASSKLKEIVDQ 267
KP N+RK +E VN N+ + + A+ Q++ + +EN+ KEIVDQ
Sbjct: 71 KPTQKFLNQRKALLEEQVNQANSLEQQAQ------ALLQQANQR--HENSLVVAKEIVDQ 122
Query: 268 MQY--LRNKAVEILKEAKRDCDL 330
Y L+ K+ EI K+A R +L
Sbjct: 123 ANYEALQLKS-EIEKKANRQANL 144
>sp|P59583|WRK32_ARATH Probable WRKY transcription factor 32 (WRKY DNA-binding protein 32)
Length = 466
Score = 30.0 bits (66), Expect = 6.2
Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Frame = +1
Query: 112 KRKDFMEYSVNVRNATKPSSPDDLVELAIQVQSSNKFVNENASSKLKE---IVDQMQYLR 282
++ F + V A +P S DD V + + S + + + E +VD+ ++
Sbjct: 227 RKTSFSpreIRVTTAIRPVSEDDTVVEELSIVPSGSDPSASTKEYICESQTLVDRKRHCE 286
Query: 283 NKAVEILKEAKRDCDLHNVKCNFIKKPGSTYYLYQRTNGD 402
N+AVE + +R ++ + + KPG GD
Sbjct: 287 NEAVEEPEPKRRLKKDNSQSSDSVSKPGKKNKFVVHAAGD 326
>sp|Q59051|YG57_METJA Putative protease MJ1657
Length = 332
Score = 29.6 bits (65), Expect = 8.2
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Frame = +1
Query: 214 NKFVNENASSKLKEIVD------QMQYLRNKAVEILKEAKRDCDLHNVKCNFIKK 360
N ++NE L E++D YL N+A++ E + C+ KCNF K+
Sbjct: 268 NAYLNERWDGNLMELLDCpreLEHFYYLDNRALDGAIEYWKSCNKLCSKCNFCKE 322
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,800,182
Number of Sequences: 369166
Number of extensions: 1264101
Number of successful extensions: 3587
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3583
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6170718545
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)