Planaria EST Database


DrC_01772

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01772
         (777 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8R081|HNRPL_MOUSE  Heterogeneous nuclear ribonucleoprote...    87   5e-17
sp|P14866|HNRPL_HUMAN  Heterogeneous nuclear ribonucleoprote...    87   5e-17
sp|Q8WVV9|HNRLL_HUMAN  Heterogeneous nuclear ribonucleoprote...    80   8e-15
sp|Q921F4|HNRLL_MOUSE  Heterogeneous nuclear ribonucleoprote...    79   2e-14
sp|O95758|ROD1_HUMAN  Regulator of differentiation 1 (Rod1)        47   6e-05
sp|P26599|PTBP1_HUMAN  Polypyrimidine tract-binding protein ...    45   3e-04
sp|Q8BHD7|ROD1_MOUSE  Regulator of differentiation 1 (Rod1)        45   3e-04
sp|Q9Z118|ROD1_RAT  Regulator of differentiation 1 (Rod1)          45   3e-04
sp|Q00438|PTBP1_RAT  Polypyrimidine tract-binding protein 1 ...    44   6e-04
sp|Q29099|PTBP1_PIG  Polypyrimidine tract-binding protein 1 ...    43   0.001
>sp|Q8R081|HNRPL_MOUSE Heterogeneous nuclear ribonucleoprotein L (hnRNP L)
          Length = 555

 Score = 87.0 bits (214), Expect = 5e-17
 Identities = 64/200 (32%), Positives = 102/200 (51%), Gaps = 10/200 (5%)
 Frame = +2

Query: 11  SKIKSDNLFNLFCLYGNVEKIKMGVETGQKSAFVQMSNREAAEFCLI-LNGITIFNKQVE 187
           SK+  D +FN+FCLYGNVEK+K  +++   +A V+M++  A +  +  LN   +F +++ 
Sbjct: 358 SKMNCDRVFNVFCLYGNVEKVKF-MKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMN 416

Query: 188 ISISKFTEI---------TDSVPNKDPVESFNSDFYNRXXXXXXXXXXXXXXXQTLHFFN 340
           + +SK   I           S   KD  ES N+ F                    LHFFN
Sbjct: 417 VCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRF---STPEQAAKNRIQHPSNVLHFFN 473

Query: 341 VPSTFTAEEIADVFISAKVKDPSQVVIFPRKNNSQRGSLVTGLIEFDTISEAIEGVVMVN 520
            P   T E   ++     VK P+ V +F  K  S+R S  +GL+E+D+ S+A+E +  +N
Sbjct: 474 APLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSS--SGLLEWDSKSDALETLGFLN 529

Query: 521 HTRLLLPQVSHPFHIKLSFS 580
           H ++  P   +P+ +KL FS
Sbjct: 530 HYQMKNPNGPYPYTLKLCFS 549
>sp|P14866|HNRPL_HUMAN Heterogeneous nuclear ribonucleoprotein L (hnRNP L)
          Length = 558

 Score = 87.0 bits (214), Expect = 5e-17
 Identities = 64/200 (32%), Positives = 102/200 (51%), Gaps = 10/200 (5%)
 Frame = +2

Query: 11  SKIKSDNLFNLFCLYGNVEKIKMGVETGQKSAFVQMSNREAAEFCLI-LNGITIFNKQVE 187
           SK+  D +FN+FCLYGNVEK+K  +++   +A V+M++  A +  +  LN   +F +++ 
Sbjct: 361 SKMNGDRVFNVFCLYGNVEKVKF-MKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLN 419

Query: 188 ISISKFTEI---------TDSVPNKDPVESFNSDFYNRXXXXXXXXXXXXXXXQTLHFFN 340
           + +SK   I           S   KD  ES N+ F                    LHFFN
Sbjct: 420 VCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRF---STPEQAAKNRIQHPSNVLHFFN 476

Query: 341 VPSTFTAEEIADVFISAKVKDPSQVVIFPRKNNSQRGSLVTGLIEFDTISEAIEGVVMVN 520
            P   T E   ++     VK PS V +F  K  S+R S  +GL+E+++ S+A+E +  +N
Sbjct: 477 APLEVTEENFFEICDELGVKRPSSVKVFSGK--SERSS--SGLLEWESKSDALETLGFLN 532

Query: 521 HTRLLLPQVSHPFHIKLSFS 580
           H ++  P   +P+ +KL FS
Sbjct: 533 HYQMKNPNGPYPYTLKLCFS 552
>sp|Q8WVV9|HNRLL_HUMAN Heterogeneous nuclear ribonucleoprotein L-like (Stromal
           RNA-regulating factor) (BLOCK24 protein)
          Length = 542

 Score = 79.7 bits (195), Expect = 8e-15
 Identities = 53/196 (27%), Positives = 99/196 (50%), Gaps = 7/196 (3%)
 Frame = +2

Query: 14  KIKSDNLFNLFCLYGNVEKIKMGVETGQKSAFVQMSNREAAEFCLI-LNGITIFNKQVEI 190
           K+    +FNLFCLYGN+EK+K  ++T   +A V+M +  A E  +  LN + +F K++ +
Sbjct: 346 KMNCSRVFNLFCLYGNIEKVKF-MKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNV 404

Query: 191 SISKFTEITDS--VPNKDPVESFNSDFYNRXXXXXXXXXXXXXXXQ----TLHFFNVPST 352
            +SK   +  S     +D   S+     ++               Q     LH++NVP  
Sbjct: 405 CVSKQHSVVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLC 464

Query: 353 FTAEEIADVFISAKVKDPSQVVIFPRKNNSQRGSLVTGLIEFDTISEAIEGVVMVNHTRL 532
            T E    +    +V    +  +F  K +++    ++GL+E++  ++A+E +  +NH ++
Sbjct: 465 VTEETFTKLCNDHEVLTFIKYKVFDAKPSAKT---LSGLLEWECKTDAVEALTALNHYQI 521

Query: 533 LLPQVSHPFHIKLSFS 580
            +P  S+P+ +KL FS
Sbjct: 522 RVPNGSNPYTLKLCFS 537
>sp|Q921F4|HNRLL_MOUSE Heterogeneous nuclear ribonucleoprotein L-like
          Length = 591

 Score = 78.6 bits (192), Expect = 2e-14
 Identities = 53/196 (27%), Positives = 98/196 (50%), Gaps = 7/196 (3%)
 Frame = +2

Query: 14  KIKSDNLFNLFCLYGNVEKIKMGVETGQKSAFVQMSNREAAEFCLI-LNGITIFNKQVEI 190
           K+    +FNLFCLYGN+EK+K  ++T   +A V+M +  A E  +  LN + +F K++ +
Sbjct: 395 KMNCSRVFNLFCLYGNIEKVKF-MKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNV 453

Query: 191 SISKFTEITDS--VPNKDPVESFNSDFYNRXXXXXXXXXXXXXXXQ----TLHFFNVPST 352
            +SK   +  S     +D   S+     ++               Q     LH++NVP  
Sbjct: 454 CVSKQHSVVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLC 513

Query: 353 FTAEEIADVFISAKVKDPSQVVIFPRKNNSQRGSLVTGLIEFDTISEAIEGVVMVNHTRL 532
            T E    +    +V    +  +F  K +++    ++GL+E+   ++A+E +  +NH ++
Sbjct: 514 VTEETFTKLCNDHEVLPFIKYKVFDAKASAKT---LSGLLEWKCKTDAVEALTALNHYQI 570

Query: 533 LLPQVSHPFHIKLSFS 580
            +P  S+P+ +KL FS
Sbjct: 571 RVPNGSNPYTLKLCFS 586
>sp|O95758|ROD1_HUMAN Regulator of differentiation 1 (Rod1)
          Length = 521

 Score = 47.0 bits (110), Expect = 6e-05
 Identities = 45/198 (22%), Positives = 92/198 (46%), Gaps = 6/198 (3%)
 Frame = +2

Query: 17  IKSDNLFNLFCLYGNVEKIKMGVETGQKSAFVQMSNREAAEFCLI-LNGITIFNKQVEIS 193
           I    LF LF +YG+V ++K+ +   +++A VQM++   A+  +  L+G  ++ K +  +
Sbjct: 339 ITPHGLFILFGVYGDVHRVKI-MFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRAT 397

Query: 194 ISKFTEIT---DSVPNKDPVESF-NSDFYNRXXXXXXXXXXXXXXXQTLHFFNVPSTFTA 361
           +SK   +    +   ++   + F NS  +                  TLH  N+P + T 
Sbjct: 398 LSKHQAVQLpreGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTV 457

Query: 362 EEIADVFISAKVKDPSQVVIFPRKNNSQRGSLVTGLIEFDTISEAIEGVV-MVNHTRLLL 538
           +++ ++FI A      +   F +K+          LI+  ++ EAI+ ++ + NH     
Sbjct: 458 DDLKNLFIEAGCS--VKAFKFFQKDRKM------ALIQLGSVEEAIQALIELHNH----- 504

Query: 539 PQVSHPFHIKLSFSPTRI 592
             +    H+++SFS + I
Sbjct: 505 -DLGENHHLRVSFSKSTI 521
>sp|P26599|PTBP1_HUMAN Polypyrimidine tract-binding protein 1 (PTB) (Heterogeneous nuclear
           ribonucleoprotein I) (hnRNP I) (57 kDa RNA-binding
           protein PPTB-1)
          Length = 531

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 43/199 (21%), Positives = 93/199 (46%), Gaps = 6/199 (3%)
 Frame = +2

Query: 14  KIKSDNLFNLFCLYGNVEKIKMGVETGQKSAFVQMSNREAAEFCLI-LNGITIFNKQVEI 190
           ++   +LF LF +YG+V+++K+ +   +++A VQM++   A+  +  LNG  +  K + I
Sbjct: 348 RVTPQSLFILFGVYGDVQRVKI-LFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 406

Query: 191 SISKFTEIT---DSVPNKDPVESF-NSDFYNRXXXXXXXXXXXXXXXQTLHFFNVPSTFT 358
           ++SK   +    +   ++   + + NS  +                  TLH  N+P + +
Sbjct: 407 TLSKHQNVQLpreGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVS 466

Query: 359 AEEIADVFISAKVKDPSQVVIFPRKNNSQRGSLVTGLIEFDTISEAIEGVV-MVNHTRLL 535
            E++  +F S    +   V  F      ++      LI+  ++ EA++ ++ + NH    
Sbjct: 467 EEDLKVLFSS----NGGVVKGFKFFQKDRK----MALIQMGSVEEAVQALIDLHNH---- 514

Query: 536 LPQVSHPFHIKLSFSPTRI 592
              +    H+++SFS + I
Sbjct: 515 --DLGENHHLRVSFSKSTI 531
>sp|Q8BHD7|ROD1_MOUSE Regulator of differentiation 1 (Rod1)
          Length = 523

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 44/198 (22%), Positives = 91/198 (45%), Gaps = 6/198 (3%)
 Frame = +2

Query: 17  IKSDNLFNLFCLYGNVEKIKMGVETGQKSAFVQMSNREAAEFCLI-LNGITIFNKQVEIS 193
           I    LF LF +YG+V ++K+ +   +++A VQM++   A+  +  L+G  ++ K +  +
Sbjct: 341 ITPHGLFILFGVYGDVHRVKI-MFNKKENALVQMADASQAQLAMNHLSGQRLYGKVLRAT 399

Query: 194 ISKFTEIT---DSVPNKDPVESF-NSDFYNRXXXXXXXXXXXXXXXQTLHFFNVPSTFTA 361
           +SK   +    +   ++   + F NS  +                  TLH  N+P + T 
Sbjct: 400 LSKHQAVQLpreGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTM 459

Query: 362 EEIADVFISAKVKDPSQVVIFPRKNNSQRGSLVTGLIEFDTISEAIEGVV-MVNHTRLLL 538
           +++ ++F  A      +   F +K+          LI+  ++ EAI+ ++ + NH     
Sbjct: 460 DDLKNLFTEAGCS--VKAFKFFQKDRKM------ALIQLGSVEEAIQALIELHNH----- 506

Query: 539 PQVSHPFHIKLSFSPTRI 592
             +    H+++SFS + I
Sbjct: 507 -DLGENHHLRVSFSKSTI 523
>sp|Q9Z118|ROD1_RAT Regulator of differentiation 1 (Rod1)
          Length = 523

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 44/198 (22%), Positives = 91/198 (45%), Gaps = 6/198 (3%)
 Frame = +2

Query: 17  IKSDNLFNLFCLYGNVEKIKMGVETGQKSAFVQMSNREAAEFCLI-LNGITIFNKQVEIS 193
           I    LF LF +YG+V ++K+ +   +++A VQM++   A+  +  L+G  ++ K +  +
Sbjct: 341 ITPHGLFILFGVYGDVHRVKI-MFNKKENALVQMADASQAQIAMNHLSGQRLYGKVLRAT 399

Query: 194 ISKFTEIT---DSVPNKDPVESF-NSDFYNRXXXXXXXXXXXXXXXQTLHFFNVPSTFTA 361
           +SK   +    +   ++   + F NS  +                  TLH  N+P + T 
Sbjct: 400 LSKHQAVQLpreGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTM 459

Query: 362 EEIADVFISAKVKDPSQVVIFPRKNNSQRGSLVTGLIEFDTISEAIEGVV-MVNHTRLLL 538
           +++ ++F  A      +   F +K+          LI+  ++ EAI+ ++ + NH     
Sbjct: 460 DDLKNLFTEAGCS--VKAFKFFQKDRKM------ALIQLGSVEEAIQALIELHNH----- 506

Query: 539 PQVSHPFHIKLSFSPTRI 592
             +    H+++SFS + I
Sbjct: 507 -DLGENHHLRVSFSKSTI 523
>sp|Q00438|PTBP1_RAT Polypyrimidine tract-binding protein 1 (PTB) (Heterogeneous nuclear
           ribonucleoprotein I) (hnRNP I) (Pyrimidine-binding
           protein) (PYBP)
          Length = 555

 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 42/199 (21%), Positives = 93/199 (46%), Gaps = 6/199 (3%)
 Frame = +2

Query: 14  KIKSDNLFNLFCLYGNVEKIKMGVETGQKSAFVQMSNREAAEFCLI-LNGITIFNKQVEI 190
           ++   +LF LF +YG+V+++K+ +   +++A V+M++   A+  +  LNG  +  K V I
Sbjct: 372 RVTPQSLFILFGVYGDVQRVKI-LFNKKENALVEMADGSQAQLAMSHLNGHKLHGKSVRI 430

Query: 191 SISKFTEIT---DSVPNKDPVESFNSDFYNRXXXXXXXXXXXXXXXQ-TLHFFNVPSTFT 358
           ++SK   +    +   ++   + + S   +R                 TLH  N+P + +
Sbjct: 431 TLSKHQSVQLpreGQEDQGLTKDYGSSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVS 490

Query: 359 AEEIADVFISAKVKDPSQVVIFPRKNNSQRGSLVTGLIEFDTISEAIEGVV-MVNHTRLL 535
            +++  +F S    +   V  F      ++      LI+  ++ EA++ ++ + NH    
Sbjct: 491 EDDLKSLFSS----NGGVVKGFKFFQKDRK----MALIQMGSVEEAVQALIELHNH---- 538

Query: 536 LPQVSHPFHIKLSFSPTRI 592
              +    H+++SFS + I
Sbjct: 539 --DLGENHHLRVSFSKSTI 555
>sp|Q29099|PTBP1_PIG Polypyrimidine tract-binding protein 1 (PTB) (Heterogeneous nuclear
           ribonucleoprotein I) (hnRNP I)
          Length = 557

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 45/210 (21%), Positives = 91/210 (43%), Gaps = 17/210 (8%)
 Frame = +2

Query: 14  KIKSDNLFNLFCLYGNVEKIKMGVETGQKSAFVQMSNREAAEFCLI-LNGITIFNKQVEI 190
           ++   +LF LF +Y +V+++K+ +   +++A VQM++   A+  +  LNG  +  K V I
Sbjct: 374 RVTPQSLFILFGVYCDVQRVKI-LFNKKENALVQMADGSQAQLAMSHLNGHKLHGKPVRI 432

Query: 191 SISKFTEIT---DSVPNKDPVESF-NSDFYNRXXXXXXXXXXXXXXXQTLHFFNVPSTFT 358
           ++SK   +    +   ++   + + NS  +                  TLH  N+P + +
Sbjct: 433 TLSKHQNVQLpreGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSIS 492

Query: 359 AEEIADVFISAKVKDPSQVVIFPRKNNSQRGSLVTG-----------LIEFDTISEAIEG 505
            E++  +F                   S  G +V G           LI+  ++ EAI+ 
Sbjct: 493 EEDLKILF-------------------SSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQA 533

Query: 506 VV-MVNHTRLLLPQVSHPFHIKLSFSPTRI 592
           ++ + NH       +    H+++SFS + I
Sbjct: 534 LIDLHNH------DLGENHHLRVSFSKSTI 557
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,598,572
Number of Sequences: 369166
Number of extensions: 1450613
Number of successful extensions: 4057
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4048
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7260540000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)