Planaria EST Database


DrC_01762

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01762
         (840 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P19538|CID_DROME  Cubitus interruptus protein                   34   0.44 
sp|P11430|PEL1_ERWCA  Pectate lyase I precursor (PEL I) (PLA)      32   2.2  
sp|Q58688|YC92_METJA  Hypothetical protein MJ1292                  31   4.9  
sp|P34483|YMJ8_CAEEL  Hypothetical protein F59B2.8 in chromo...    30   6.4  
>sp|P19538|CID_DROME Cubitus interruptus protein
          Length = 1397

 Score = 34.3 bits (77), Expect = 0.44
 Identities = 23/75 (30%), Positives = 29/75 (38%)
 Frame = +3

Query: 102  EQLDYNKKWYDDTAHLPKRHFVTPLKINFGCYIGKRPRAISDNHFWGDTNVVYLNKLGDV 281
            E L Y     DDT HL K H   P+  N           I+ NH+   +N+ Y NK    
Sbjct: 1087 EMLQYLNLVKDDTNHLEKEHQAVPVGSNVS-------ETIASNHYREQSNIYYTNK---Q 1136

Query: 282  IFDPNRKIKFQSGDT 326
            I  P   +  Q   T
Sbjct: 1137 ILTPPSNVDIQPNTT 1151
>sp|P11430|PEL1_ERWCA Pectate lyase I precursor (PEL I) (PLA)
          Length = 374

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 29/116 (25%), Positives = 47/116 (40%)
 Frame = +3

Query: 189 GCYIGKRPRAISDNHFWGDTNVVYLNKLGDVIFDPNRKIKFQSGDTYKFGCNNNMHEQIP 368
           G   G   R  +  + W D N ++     +    P+    F+S    K G  N       
Sbjct: 147 GAKDGDAIRIDNSPNVWIDHNEIFAKNF-ECAGTPDNDTTFESAVDIKKGATNVTVSYNY 205

Query: 369 LIGLFNKEGLSGTQVEPTGALCQLQINANIFNEIGSKKPIYNKHNALQGNNAYEEI 536
           + G+  K GLSG+    TG    L  + NI++++ S+ P+         NN Y+ I
Sbjct: 206 IHGV-KKVGLSGSSNTDTGR--DLTYHHNIYSDVNSRLPLQRGGKVHAYNNLYDGI 258
>sp|Q58688|YC92_METJA Hypothetical protein MJ1292
          Length = 552

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +3

Query: 120 KKWYDDTAHLPKRHFVTPLKINFGCYIGK---RPRAISDNHF 236
           K W  +    PK   + P+K+NF  Y GK     +A+SDNH+
Sbjct: 200 KSWTPNVYVPPKSKIIIPIKVNF-YYSGKYTITVKAVSDNHY 240
>sp|P34483|YMJ8_CAEEL Hypothetical protein F59B2.8 in chromosome III
          Length = 435

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
 Frame = +3

Query: 21  TSTEYYM---GRFYPPEVKTTEDF--MLSPYHEQLDYNKKWYDDTAHL 149
           TS+ Y++    RF  PE K  E    ML+PY+EQL   +K YDD+ +L
Sbjct: 336 TSSLYFLVWTERF--PEKKRLEKLPKMLAPYYEQLVQLRKEYDDSCNL 381
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,651,087
Number of Sequences: 369166
Number of extensions: 2075702
Number of successful extensions: 5022
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5021
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8197207050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)