Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_M10
(840 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P19538|CID_DROME Cubitus interruptus protein 34 0.44
sp|P11430|PEL1_ERWCA Pectate lyase I precursor (PEL I) (PLA) 32 2.2
sp|Q58688|YC92_METJA Hypothetical protein MJ1292 31 4.9
sp|P34483|YMJ8_CAEEL Hypothetical protein F59B2.8 in chromo... 30 6.4
>sp|P19538|CID_DROME Cubitus interruptus protein
Length = 1397
Score = 34.3 bits (77), Expect = 0.44
Identities = 23/75 (30%), Positives = 29/75 (38%)
Frame = +3
Query: 102 EQLDYNKKWYDDTAHLPKRHFVTPLKINFGCYIGKRPRAISDNHFWGDTNVVYLNKLGDV 281
E L Y DDT HL K H P+ N I+ NH+ +N+ Y NK
Sbjct: 1087 EMLQYLNLVKDDTNHLEKEHQAVPVGSNVS-------ETIASNHYREQSNIYYTNK---Q 1136
Query: 282 IFDPNRKIKFQSGDT 326
I P + Q T
Sbjct: 1137 ILTPPSNVDIQPNTT 1151
>sp|P11430|PEL1_ERWCA Pectate lyase I precursor (PEL I) (PLA)
Length = 374
Score = 32.0 bits (71), Expect = 2.2
Identities = 29/116 (25%), Positives = 47/116 (40%)
Frame = +3
Query: 189 GCYIGKRPRAISDNHFWGDTNVVYLNKLGDVIFDPNRKIKFQSGDTYKFGCNNNMHEQIP 368
G G R + + W D N ++ + P+ F+S K G N
Sbjct: 147 GAKDGDAIRIDNSPNVWIDHNEIFAKNF-ECAGTPDNDTTFESAVDIKKGATNVTVSYNY 205
Query: 369 LIGLFNKEGLSGTQVEPTGALCQLQINANIFNEIGSKKPIYNKHNALQGNNAYEEI 536
+ G+ K GLSG+ TG L + NI++++ S+ P+ NN Y+ I
Sbjct: 206 IHGV-KKVGLSGSSNTDTGR--DLTYHHNIYSDVNSRLPLQRGGKVHAYNNLYDGI 258
>sp|Q58688|YC92_METJA Hypothetical protein MJ1292
Length = 552
Score = 30.8 bits (68), Expect = 4.9
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +3
Query: 120 KKWYDDTAHLPKRHFVTPLKINFGCYIGK---RPRAISDNHF 236
K W + PK + P+K+NF Y GK +A+SDNH+
Sbjct: 200 KSWTPNVYVPPKSKIIIPIKVNF-YYSGKYTITVKAVSDNHY 240
>sp|P34483|YMJ8_CAEEL Hypothetical protein F59B2.8 in chromosome III
Length = 435
Score = 30.4 bits (67), Expect = 6.4
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Frame = +3
Query: 21 TSTEYYM---GRFYPPEVKTTEDF--MLSPYHEQLDYNKKWYDDTAHL 149
TS+ Y++ RF PE K E ML+PY+EQL +K YDD+ +L
Sbjct: 336 TSSLYFLVWTERF--PEKKRLEKLPKMLAPYYEQLVQLRKEYDDSCNL 381
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,651,087
Number of Sequences: 369166
Number of extensions: 2075702
Number of successful extensions: 5022
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5021
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8197207050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)