Planaria EST Database


DrC_01756

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01756
         (560 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LM02|SMT1_ARATH  Cycloartenol-C-24-methyltransferase (2...    40   0.003
sp|Q96WX4|ERG6_PNECA  Sterol 24-C-methyltransferase (Delta(2...    39   0.009
sp|Q6ZIX2|SMT1_ORYSA  Cycloartenol-C-24-methyltransferase 1 ...    38   0.020
sp|O14321|ERG6_SCHPO  Sterol 24-C-methyltransferase (Delta(2...    36   0.057
sp|Q71Y84|UBIE_LISMF  Menaquinone biosynthesis methyltransfe...    36   0.074
sp|Q8CSH9|UBIE_STAES  Menaquinone biosynthesis methyltransfe...    35   0.13 
sp|Q9RRT0|UBIE_DEIRA  Menaquinone biosynthesis methyltransfe...    34   0.22 
sp|P46326|YXBB_BACSU  Hypothetical protein yxbB                    33   0.48 
sp|O74198|ERG6_CANAL  Sterol 24-C-methyltransferase (Delta(2...    33   0.63 
sp|Q6FRZ7|ERG6_CANGA  Sterol 24-C-methyltransferase (Delta(2...    33   0.63 
>sp|Q9LM02|SMT1_ARATH Cycloartenol-C-24-methyltransferase (24-sterol C-methyltransferase
           1) (Sterol C-methyltransferase 1) (STEROL
           METHYLTRANSFERASE 1) (CEPHALOPOD protein)
          Length = 336

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
 Frame = +1

Query: 10  GFGVGYGLSKVVKIINEGKGKIYGTEMSDYCIQKFYKYLNKMDVNHKTIKLYKADVSDLP 189
           G G+G  L ++ +  N     + G   ++Y I +  K LN++    KT    KAD   +P
Sbjct: 102 GCGIGGPLREIARFSNS---VVTGLNNNEYQITRG-KELNRLAGVDKTCNFVKADFMKMP 157

Query: 190 IMSNSISVVYHVNCFYSWNNPIQSARGCL-EMYRVLRPG 303
              NS   VY +    + + P   A GC  E+YRVL+PG
Sbjct: 158 FPENSFDAVYAIEA--TCHAP--DAYGCYKEIYRVLKPG 192
>sp|Q96WX4|ERG6_PNECA Sterol 24-C-methyltransferase (Delta(24)-sterol
           C-methyltransferase)
          Length = 377

 Score = 38.9 bits (89), Expect = 0.009
 Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
 Frame = +1

Query: 73  IYGTEMSDYCIQKFYKYLNKMDVNHKTIKLYKADVSDLPIMSNSISVVYHVNCFYSWNNP 252
           I G   +DY IQ+   Y  K  ++ K +K  K D   +P   NS   +Y +         
Sbjct: 152 IVGLNNNDYQIQRAKYYSEKKGLSDK-LKFIKGDFMQMPFPENSFDKIYSIEATIH---- 206

Query: 253 IQSARGCL-EMYRVLRPGGQVVSTFNKSMFKKIFNQNIP 366
             S  G   E+YRVL+PGG + +++   M  K +++N P
Sbjct: 207 APSLEGVYSEIYRVLKPGG-LYASYEWVMLNK-YDENDP 243
>sp|Q6ZIX2|SMT1_ORYSA Cycloartenol-C-24-methyltransferase 1 (24-sterol
           C-methyltransferase 1) (Sterol C-methyltransferase 1)
          Length = 344

 Score = 37.7 bits (86), Expect = 0.020
 Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
 Frame = +1

Query: 10  GFGVGYGLSKVVKIINEGKGKIYGTEMSDYCIQKFYKYLNKMDVNHKTIKLYKADVSDLP 189
           G G+G  L ++ K        + G   ++Y I +  K LN++     T    KAD   +P
Sbjct: 108 GCGIGGPLREIAKF---SLASVTGLNNNEYQITRG-KELNRVAGVSGTCDFVKADFMKMP 163

Query: 190 IMSNSISVVYHVNCFYSWNNPIQSARGCL-EMYRVLRPG 303
              N+   VY +       +P+    GC  E+YRVL+PG
Sbjct: 164 FSDNTFDAVYAIEATCHAPDPV----GCYKEIYRVLKPG 198
>sp|O14321|ERG6_SCHPO Sterol 24-C-methyltransferase (Delta(24)-sterol
           C-methyltransferase)
          Length = 378

 Score = 36.2 bits (82), Expect = 0.057
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
 Frame = +1

Query: 4   ARGFGVGYGLSKVVKIINEGKG-KIYGTEMSDYCIQKFYKYLNKMDVNHKTIKLYKADVS 180
           +R   VG G+    + I E  G  + G   +DY I +   Y  K +++ K +   K D  
Sbjct: 126 SRVLDVGCGVGGPAREITEFTGCNLVGLNNNDYQISRCNNYAVKRNLDKKQV-FVKGDFM 184

Query: 181 DLPIMSNSISVVYHVNCFYSWNNPIQSARGCLEMYRVLRPGG 306
            +P   N+   VY +       + ++   G  E++RVL+PGG
Sbjct: 185 HMPFEDNTFDYVYAIEATVHAPS-LEGVYG--EIFRVLKPGG 223
>sp|Q71Y84|UBIE_LISMF Menaquinone biosynthesis methyltransferase ubiE
 sp|P67056|UBIE_LISIN Menaquinone biosynthesis methyltransferase ubiE
 sp|P67055|UBIE_LISMO Menaquinone biosynthesis methyltransferase ubiE
          Length = 237

 Score = 35.8 bits (81), Expect = 0.074
 Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
 Frame = +1

Query: 64  KGKIYGTEMSDYCIQKFYKYLNKMDVNHKTIKLYKADVSDLPIMSNSISVVYHVNCFYSW 243
           +G + G + S+  ++   + + + D+++  ++L   +  +LP   NS     +V   +  
Sbjct: 72  EGHVTGLDFSENMLKVGREKVKEADLHN--VELIHGNAMELPFPDNSFD---YVTIGFGL 126

Query: 244 NNPIQSARGCLEMYRVLRPGGQV----VSTFNKSMFKKIFNQNIPILNPL 381
            N     +   EMYRVL+PGGQ+     S  N   +K++FN     + P+
Sbjct: 127 RNVPDYMQVLREMYRVLKPGGQLACIDTSQPNIPGWKQVFNAYFRYVMPV 176
>sp|Q8CSH9|UBIE_STAES Menaquinone biosynthesis methyltransferase ubiE
 sp|Q5HP74|UBIE_STAEQ Menaquinone biosynthesis methyltransferase ubiE
          Length = 241

 Score = 35.0 bits (79), Expect = 0.13
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
 Frame = +1

Query: 64  KGKIYGTEMSDYCIQKFYKYLNKMDVNHKTIKLYKADVSDLPIMSNSISVVYHVNCFYSW 243
           KG++ G + S+  ++   +    ++     I+L   D  +LP   NS     +V   +  
Sbjct: 74  KGQVTGLDFSENMLEVGKQKTASLE----NIQLVHGDAMNLPFDDNSFD---YVTIGFGL 126

Query: 244 NNPIQSARGCLEMYRVLRPGGQVV----STFNKSMFKKIFNQNIPILNPL 381
            N         EM+RVL+PGG VV    S     +FK+I++     + P+
Sbjct: 127 RNVPDYLSALKEMHRVLKPGGMVVCLETSQPTLPLFKQIYSLYFKFVMPI 176
>sp|Q9RRT0|UBIE_DEIRA Menaquinone biosynthesis methyltransferase ubiE
          Length = 241

 Score = 34.3 bits (77), Expect = 0.22
 Identities = 22/75 (29%), Positives = 32/75 (42%)
 Frame = +1

Query: 91  SDYCIQKFYKYLNKMDVNHKTIKLYKADVSDLPIMSNSISVVYHVNCFYSWNNPIQSARG 270
           SD+  Q       K      +I+  + D   LP    S   V    C + + N     +G
Sbjct: 87  SDFVPQMLDLARQKAGAKQLSIRFEEGDALRLPYPDASFDAV---TCAFGFRNFADYTQG 143

Query: 271 CLEMYRVLRPGGQVV 315
             EM+RVL PGG++V
Sbjct: 144 LAEMWRVLTPGGRLV 158
>sp|P46326|YXBB_BACSU Hypothetical protein yxbB
          Length = 244

 Score = 33.1 bits (74), Expect = 0.48
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +1

Query: 172 DVSDLPIMSNSISVVYHVNCFYSWNNPIQSARGCLEMYRVLRPGGQVV--STFN 327
           DV  L         +   +C + W + ++  + C   YRVL PGG++V   TFN
Sbjct: 94  DVHHLSYADQYADFIVSYSCLHHWEDVVKGLKEC---YRVLAPGGKIVILDTFN 144
>sp|O74198|ERG6_CANAL Sterol 24-C-methyltransferase (Delta(24)-sterol
           C-methyltransferase)
          Length = 376

 Score = 32.7 bits (73), Expect = 0.63
 Identities = 22/79 (27%), Positives = 37/79 (46%)
 Frame = +1

Query: 70  KIYGTEMSDYCIQKFYKYLNKMDVNHKTIKLYKADVSDLPIMSNSISVVYHVNCFYSWNN 249
           +I G   +DY I++   Y  K  ++HK +   K D   +     S   VY +    + + 
Sbjct: 147 EIVGLNNNDYQIERANHYAKKYHLDHK-LSYVKGDFMQMDFEPESFDAVYAIEA--TVHA 203

Query: 250 PIQSARGCLEMYRVLRPGG 306
           P+       E+Y+VL+PGG
Sbjct: 204 PVLEG-VYSEIYKVLKPGG 221
>sp|Q6FRZ7|ERG6_CANGA Sterol 24-C-methyltransferase (Delta(24)-sterol
           C-methyltransferase)
          Length = 372

 Score = 32.7 bits (73), Expect = 0.63
 Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
 Frame = +1

Query: 19  VGYGLSKVVKIINEGKG-KIYGTEMSDYCIQKFYKYLNKMDVNHKTIKLYKADVSDLPIM 195
           VG G+    + I    G  I G   +DY IQK   Y  K ++    +   K D  ++   
Sbjct: 126 VGCGVGGPARTIARFTGCNIIGLNNNDYQIQKAKYYAKKYNLQDH-MDFVKGDFMNMEFE 184

Query: 196 SNSISVVYHVNCFYSWNNP-IQSARGCLEMYRVLRPGG 306
            NS   VY +    + + P ++   G  E+Y+VL+PGG
Sbjct: 185 PNSFDKVYAIEA--TCHAPKLEGVYG--EIYKVLKPGG 218
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,586,636
Number of Sequences: 369166
Number of extensions: 1180303
Number of successful extensions: 3125
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3121
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4029688280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)