Planaria EST Database


DrC_01754

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01754
         (681 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q91VY9|ZN622_MOUSE  Zinc finger protein 622                     87   3e-17
sp|Q969S3|ZN622_HUMAN  Zinc finger protein 622 (Zinc finger-...    78   2e-14
sp|P38344|YB9M_YEAST  45.8 kDa protein in SHM1-MRPL37 interg...    77   5e-14
sp|Q90Y35|ZN622_CHICK  Zinc finger protein 622 (Zn-finger pr...    66   1e-10
sp|Q7TM96|Z622_RAT  Zinc finger protein 622 (Ac1133) (Ac2-061)     63   8e-10
sp|Q9NRM2|ZN277_HUMAN  Zinc finger protein 277                     42   0.002
sp|Q9UTL5|TF3A_SCHPO  Transcription factor IIIA (Factor A) (...    34   0.31 
sp|P28167|ZFH2_DROME  Zinc finger protein 2 (Zinc finger hom...    34   0.41 
sp|Q9BQA5|MIZF_HUMAN  MBD2-interacting zinc finger protein (...    33   0.69 
sp|Q9HJD4|FEN_THEAC  Flap structure-specific endonuclease          33   0.69 
>sp|Q91VY9|ZN622_MOUSE Zinc finger protein 622
          Length = 476

 Score = 87.4 bits (215), Expect = 3e-17
 Identities = 68/231 (29%), Positives = 112/231 (48%), Gaps = 26/231 (11%)
 Frame = +1

Query: 1   DCLFCKLSFKTTEKNLNHMHQNHNFTLPYPQCISDLEGLMEYLVCLIDEYHVCLQCN--- 171
           DCLFC     +  KN+ HM + H+F +P  + +SDL+GL++YL   +    +CL CN   
Sbjct: 252 DCLFCSHHSSSLVKNVAHMTKVHSFFIPDIEYLSDLKGLIKYLGEKVGVGKICLWCNEKG 311

Query: 172 KQFDERRSVRSHMKHMNHMRLYFHLESGGD--DLCDFYSNLP-----QPVVNLNALS--- 321
           K F    +V++HM   +H +L+   ++  +  D  DF S+ P     Q    L ALS   
Sbjct: 312 KSFYSTEAVQAHMNDKSHCKLFTDGDAALEFADFYDFRSSYPDYKEGQDPAELEALSTDK 371

Query: 322 ----DNMEIEAVLPNGKRVGNRTMNVYFKQNLTGLTNPNNLSITSGPEKAKMSLISSGRY 489
               D+  +E +LP+G RVG+R++  Y+KQ   GL  P  +++    +     L      
Sbjct: 372 ILECDDETMELILPSGARVGHRSLMRYYKQRF-GL--PRAVTVARNQKAVGRVLQQYRAL 428

Query: 490 GQLATQTKITPKEKKYKTLEARYVQLRSSRY---------SNFQQHFRAQI 615
           G + +      +E+     + +YVQ   S++         +  Q HFRAQ+
Sbjct: 429 GWMGSTGAALMRER-----DMQYVQRMKSKWMLKIGMKNNATKQMHFRAQV 474
>sp|Q969S3|ZN622_HUMAN Zinc finger protein 622 (Zinc finger-like protein 9)
          Length = 477

 Score = 78.2 bits (191), Expect = 2e-14
 Identities = 47/150 (31%), Positives = 80/150 (53%), Gaps = 17/150 (11%)
 Frame = +1

Query: 1   DCLFCKLSFKTTEKNLNHMHQNHNFTLPYPQCISDLEGLMEYLVCLIDEYHVCLQCN--- 171
           DCLFC     +  KN+ HM ++H+F +P  + +SD++GL++YL   +    +CL CN   
Sbjct: 253 DCLFCSHHSSSLMKNVAHMTKDHSFFIPDIEYLSDIKGLIKYLGEKVGVGKICLWCNEKG 312

Query: 172 KQFDERRSVRSHMKHMNHMRLYFHLESGGD--DLCDFYSNLP------------QPVVNL 309
           K F    +V++HM   +H +L+   ++  +  D  DF S+ P            +     
Sbjct: 313 KSFYSTEAVQAHMNDKSHCKLFTDGDAALEFADFYDFRSSYPDHKEGEDPNKAEELPSEK 372

Query: 310 NALSDNMEIEAVLPNGKRVGNRTMNVYFKQ 399
           N   D+  +E +LP+G RVG+R++  Y+KQ
Sbjct: 373 NLEYDDETMELILPSGARVGHRSLMRYYKQ 402
>sp|P38344|YB9M_YEAST 45.8 kDa protein in SHM1-MRPL37 intergenic region
          Length = 393

 Score = 76.6 bits (187), Expect = 5e-14
 Identities = 61/237 (25%), Positives = 103/237 (43%), Gaps = 32/237 (13%)
 Frame = +1

Query: 4   CLFCKLS--FKTTEKNLNHMHQNHNFTLPYPQCISDLEGLMEYLVCLIDEYHVCLQCNKQ 177
           CLFC+ +  FK  E+NL HM + H F +P  + + D  GL++Y+   I   ++C+ CN Q
Sbjct: 164 CLFCEHNKHFKDVEENLEHMFRTHGFYIPEQKYLVDKIGLVKYMSEKIGLGNICIVCNYQ 223

Query: 178 FDERRSVRSHMKHMNHMRLYFHLESGGDDLCDFYS-NLPQPVVNLNALSDNME------- 333
                +VR HM    H ++ +  E    ++ +FY         N N   DN +       
Sbjct: 224 GRTLTAVRQHMLAKRHCKIPYESEDERLEISEFYDFTSSYANFNSNTTPDNEDDWEDVGS 283

Query: 334 -------------------IEAVLPNGKRVGNRTMNVYFKQNLTG---LTNPNNLSITSG 447
                              IE  LP G +VG+R++  Y+KQ+L     LT      + + 
Sbjct: 284 DEAGSDDEDLPQEYLYNDGIELHLPTGIKVGHRSLQRYYKQDLKPEVILTEGQGTLVAAE 343

Query: 448 PEKAKMSLISSGRYGQLATQTKITPKEKKYKTLEARYVQLRSSRYSNFQQHFRAQIL 618
                 +    G    + TQ ++   E+     + + +  RS+++ N Q H+R Q+L
Sbjct: 344 TRSFLPAFDKKG----VQTQQRVWQTER----FDKKRLDKRSAKFVNNQPHYRDQLL 392
>sp|Q90Y35|ZN622_CHICK Zinc finger protein 622 (Zn-finger protein C47)
          Length = 405

 Score = 65.9 bits (159), Expect = 1e-10
 Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 5/127 (3%)
 Frame = +1

Query: 1   DCLFCKLSFKTTEKNLNHMHQNHNFTLPYPQCISDLEGLMEYLVCLIDEYHVCLQCN--- 171
           DCLFC    +T  KN+ HM + H+F +P  + + DL GL++YL   I    +C+ CN   
Sbjct: 245 DCLFCSHHSRTLMKNVAHMTKVHSFFIPDIEYLVDLRGLIKYLGEKIGVGKICIWCNEKG 304

Query: 172 KQFDERRSVRSHMKHMNHMRLYFHLESGGD--DLCDFYSNLPQPVVNLNALSDNMEIEAV 345
           K F    +V++HM   +H +L+   ++  +  D  DF S+ P      +    +ME+ A 
Sbjct: 305 KSFYSTEAVQAHMNDKSHCKLFTDGDAALEFADFYDFRSSYPD-----HKEGQDMEVPAE 359

Query: 346 LPNGKRV 366
           LP+ + +
Sbjct: 360 LPSDREL 366
>sp|Q7TM96|Z622_RAT Zinc finger protein 622 (Ac1133) (Ac2-061)
          Length = 386

 Score = 62.8 bits (151), Expect = 8e-10
 Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 5/102 (4%)
 Frame = +1

Query: 1   DCLFCKLSFKTTEKNLNHMHQNHNFTLPYPQCISDLEGLMEYLVCLIDEYHVCLQCN--- 171
           DCLFC     +  KN+ HM + H+F +P  + +SDL+GL++YL   +    +CL CN   
Sbjct: 246 DCLFCSHHSSSLVKNVAHMTKVHSFFIPDIEYLSDLKGLIKYLGEKVGVGKICLWCNEKG 305

Query: 172 KQFDERRSVRSHMKHMNHMRLYFHLESGGD--DLCDFYSNLP 291
           K F    +V++HM   +H +L+   ++  +  D  DF S+ P
Sbjct: 306 KSFYSTEAVQAHMNDKSHCKLFTDGDAALEFADFYDFRSSYP 347
>sp|Q9NRM2|ZN277_HUMAN Zinc finger protein 277
          Length = 438

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +1

Query: 4   CLFCKLSFKTTEKN-LNHMHQNHNFTLPYPQCISDLEGLMEYLVCLIDEYHVCLQCNKQF 180
           C+FC   F       LNHM + H F +  P  I +    +  L   +D    CL C K F
Sbjct: 163 CMFCNEEFLGNRSVILNHMAREHAFNIGLPDNIVNCNEFLCTLQKKLDNLQ-CLYCEKTF 221

Query: 181 DERRSVRSHMKHMNHMRL 234
            ++ +++ HM+   H ++
Sbjct: 222 RDKNTLKDHMRKKQHRKI 239

 Score = 34.7 bits (78), Expect = 0.24
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
 Frame = +1

Query: 4   CLFCKLSFKTTEKNLNHMHQNHNFTLPYPQCISDLEGLMEYLVCLIDEYHV----CLQCN 171
           CLFC+   +T EK   HM   H F L   +    L    +  +       V    C  C+
Sbjct: 292 CLFCEKQAETIEKLYVHMEDAHEFDLLKIKSELGLNFYQQVKLVNFIRRQVHQCRCYGCH 351

Query: 172 KQFDERRSVRSHMKHMNHMRL 234
            +F  +  +R+HM+   H  L
Sbjct: 352 VKFKSKADLRTHMEETKHTSL 372
>sp|Q9UTL5|TF3A_SCHPO Transcription factor IIIA (Factor A) (TFIIIA)
          Length = 374

 Score = 34.3 bits (77), Expect = 0.31
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
 Frame = +1

Query: 13  CKLSFKTTEKNLNHMHQNH----NFTLPYPQCISDLEGLMEY--LVCLIDEYHV--CLQC 168
           C+L F T +K  NH+++ H    +++ P+  C+   EG  ++  L   I E HV  C  C
Sbjct: 151 CELRFATKQKLQNHVNRAHEKIISYSCPHESCVGH-EGFEKWSQLQNHIREAHVPSCSIC 209

Query: 169 NKQFDERRSVRSHM 210
            +QF     +R H+
Sbjct: 210 GRQFKTAAHLRHHV 223
>sp|P28167|ZFH2_DROME Zinc finger protein 2 (Zinc finger homeodomain protein 2)
          Length = 3005

 Score = 33.9 bits (76), Expect = 0.41
 Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 26/95 (27%)
 Frame = +1

Query: 4    CLFCKLSFKTTEKNLNHMHQNHNFTL----------------------PYPQCISDLEGL 117
            C  C+ SFK  E+ L H  QN +F+L                        P  IS  + L
Sbjct: 1440 CQQCEASFKHEEQLLKHAQQNQHFSLQNGEYLCLAASHISRPCFMTFRTIPTMISHFQDL 1499

Query: 118  MEYLVCLIDEYHV----CLQCNKQFDERRSVRSHM 210
              ++  +I E HV    C QC+  F  +  + +HM
Sbjct: 1500 --HMSLIISERHVYKYRCKQCSLAFKTQEKLTTHM 1532
>sp|Q9BQA5|MIZF_HUMAN MBD2-interacting zinc finger protein (Methyl-CpG-binding protein
           2-interacting zinc finger protein)
          Length = 517

 Score = 33.1 bits (74), Expect = 0.69
 Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 8/106 (7%)
 Frame = +1

Query: 13  CKLSFKTTEKNLNHMHQN-HNFTLPYPQCISDLEGLMEYLVCL-----IDEYHV-CLQCN 171
           C  +FK   K   H+  +     +  P C        ++L  +     +D+ H  C  C+
Sbjct: 176 CTCTFKDRSKLREHLRSHTQEKVVACPTCGGMFANNTKFLDHIRRQTSLDQQHFQCSHCS 235

Query: 172 KQFDERRSVRSHMK-HMNHMRLYFHLESGGDDLCDFYSNLPQPVVN 306
           K+F   R +R HM+ H+NH +           LCD    LP  + N
Sbjct: 236 KRFATERLLRDHMRNHVNHYKC---------PLCDMTCPLPSSLRN 272
>sp|Q9HJD4|FEN_THEAC Flap structure-specific endonuclease
          Length = 336

 Score = 33.1 bits (74), Expect = 0.69
 Identities = 38/154 (24%), Positives = 63/154 (40%), Gaps = 7/154 (4%)
 Frame = +1

Query: 193 SVRSHMKHMNHMRLYFHLESGGDDLCDFYSNL----PQPVVNLNALSDNMEIEAVLPNGK 360
           S R  MK      L   +E G +DL  +YS +    PQ V +   L D M I  V  +  
Sbjct: 92  SERQMMKEKAKAELEEAIERGEEDLRQYYSRINYITPQIVDDTKKLLDYMGIPYV--DAP 149

Query: 361 RVGNRTMNVYFKQNLTGLTNPNNLSITSGPEKAKMSLISSGRYGQLATQTKITPKEKKYK 540
             G    +   K+N+ G+ + +   +  G  K   +    GR        +  P++  YK
Sbjct: 150 SEGEAQASYMTKKNVDGVISQDYDCLLFGARKILRNFAIYGR--------RKVPRKNIYK 201

Query: 541 TLEARYV---QLRSSRYSNFQQHFRAQILM*TEY 633
           T+   Y+   ++ S+   N  Q     IL+ T++
Sbjct: 202 TVYPEYIILDEVLSANQINQDQLIGIGILVGTDF 235
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,805,819
Number of Sequences: 369166
Number of extensions: 1384852
Number of successful extensions: 4627
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4592
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5782011865
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)