Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_K18
(681 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q91VY9|ZN622_MOUSE Zinc finger protein 622 87 3e-17
sp|Q969S3|ZN622_HUMAN Zinc finger protein 622 (Zinc finger-... 78 2e-14
sp|P38344|YB9M_YEAST 45.8 kDa protein in SHM1-MRPL37 interg... 77 5e-14
sp|Q90Y35|ZN622_CHICK Zinc finger protein 622 (Zn-finger pr... 66 1e-10
sp|Q7TM96|Z622_RAT Zinc finger protein 622 (Ac1133) (Ac2-061) 63 8e-10
sp|Q9NRM2|ZN277_HUMAN Zinc finger protein 277 42 0.002
sp|Q9UTL5|TF3A_SCHPO Transcription factor IIIA (Factor A) (... 34 0.31
sp|P28167|ZFH2_DROME Zinc finger protein 2 (Zinc finger hom... 34 0.41
sp|Q9BQA5|MIZF_HUMAN MBD2-interacting zinc finger protein (... 33 0.69
sp|Q9HJD4|FEN_THEAC Flap structure-specific endonuclease 33 0.69
>sp|Q91VY9|ZN622_MOUSE Zinc finger protein 622
Length = 476
Score = 87.4 bits (215), Expect = 3e-17
Identities = 68/231 (29%), Positives = 112/231 (48%), Gaps = 26/231 (11%)
Frame = +1
Query: 1 DCLFCKLSFKTTEKNLNHMHQNHNFTLPYPQCISDLEGLMEYLVCLIDEYHVCLQCN--- 171
DCLFC + KN+ HM + H+F +P + +SDL+GL++YL + +CL CN
Sbjct: 252 DCLFCSHHSSSLVKNVAHMTKVHSFFIPDIEYLSDLKGLIKYLGEKVGVGKICLWCNEKG 311
Query: 172 KQFDERRSVRSHMKHMNHMRLYFHLESGGD--DLCDFYSNLP-----QPVVNLNALS--- 321
K F +V++HM +H +L+ ++ + D DF S+ P Q L ALS
Sbjct: 312 KSFYSTEAVQAHMNDKSHCKLFTDGDAALEFADFYDFRSSYPDYKEGQDPAELEALSTDK 371
Query: 322 ----DNMEIEAVLPNGKRVGNRTMNVYFKQNLTGLTNPNNLSITSGPEKAKMSLISSGRY 489
D+ +E +LP+G RVG+R++ Y+KQ GL P +++ + L
Sbjct: 372 ILECDDETMELILPSGARVGHRSLMRYYKQRF-GL--PRAVTVARNQKAVGRVLQQYRAL 428
Query: 490 GQLATQTKITPKEKKYKTLEARYVQLRSSRY---------SNFQQHFRAQI 615
G + + +E+ + +YVQ S++ + Q HFRAQ+
Sbjct: 429 GWMGSTGAALMRER-----DMQYVQRMKSKWMLKIGMKNNATKQMHFRAQV 474
>sp|Q969S3|ZN622_HUMAN Zinc finger protein 622 (Zinc finger-like protein 9)
Length = 477
Score = 78.2 bits (191), Expect = 2e-14
Identities = 47/150 (31%), Positives = 80/150 (53%), Gaps = 17/150 (11%)
Frame = +1
Query: 1 DCLFCKLSFKTTEKNLNHMHQNHNFTLPYPQCISDLEGLMEYLVCLIDEYHVCLQCN--- 171
DCLFC + KN+ HM ++H+F +P + +SD++GL++YL + +CL CN
Sbjct: 253 DCLFCSHHSSSLMKNVAHMTKDHSFFIPDIEYLSDIKGLIKYLGEKVGVGKICLWCNEKG 312
Query: 172 KQFDERRSVRSHMKHMNHMRLYFHLESGGD--DLCDFYSNLP------------QPVVNL 309
K F +V++HM +H +L+ ++ + D DF S+ P +
Sbjct: 313 KSFYSTEAVQAHMNDKSHCKLFTDGDAALEFADFYDFRSSYPDHKEGEDPNKAEELPSEK 372
Query: 310 NALSDNMEIEAVLPNGKRVGNRTMNVYFKQ 399
N D+ +E +LP+G RVG+R++ Y+KQ
Sbjct: 373 NLEYDDETMELILPSGARVGHRSLMRYYKQ 402
>sp|P38344|YB9M_YEAST 45.8 kDa protein in SHM1-MRPL37 intergenic region
Length = 393
Score = 76.6 bits (187), Expect = 5e-14
Identities = 61/237 (25%), Positives = 103/237 (43%), Gaps = 32/237 (13%)
Frame = +1
Query: 4 CLFCKLS--FKTTEKNLNHMHQNHNFTLPYPQCISDLEGLMEYLVCLIDEYHVCLQCNKQ 177
CLFC+ + FK E+NL HM + H F +P + + D GL++Y+ I ++C+ CN Q
Sbjct: 164 CLFCEHNKHFKDVEENLEHMFRTHGFYIPEQKYLVDKIGLVKYMSEKIGLGNICIVCNYQ 223
Query: 178 FDERRSVRSHMKHMNHMRLYFHLESGGDDLCDFYS-NLPQPVVNLNALSDNME------- 333
+VR HM H ++ + E ++ +FY N N DN +
Sbjct: 224 GRTLTAVRQHMLAKRHCKIPYESEDERLEISEFYDFTSSYANFNSNTTPDNEDDWEDVGS 283
Query: 334 -------------------IEAVLPNGKRVGNRTMNVYFKQNLTG---LTNPNNLSITSG 447
IE LP G +VG+R++ Y+KQ+L LT + +
Sbjct: 284 DEAGSDDEDLPQEYLYNDGIELHLPTGIKVGHRSLQRYYKQDLKPEVILTEGQGTLVAAE 343
Query: 448 PEKAKMSLISSGRYGQLATQTKITPKEKKYKTLEARYVQLRSSRYSNFQQHFRAQIL 618
+ G + TQ ++ E+ + + + RS+++ N Q H+R Q+L
Sbjct: 344 TRSFLPAFDKKG----VQTQQRVWQTER----FDKKRLDKRSAKFVNNQPHYRDQLL 392
>sp|Q90Y35|ZN622_CHICK Zinc finger protein 622 (Zn-finger protein C47)
Length = 405
Score = 65.9 bits (159), Expect = 1e-10
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 5/127 (3%)
Frame = +1
Query: 1 DCLFCKLSFKTTEKNLNHMHQNHNFTLPYPQCISDLEGLMEYLVCLIDEYHVCLQCN--- 171
DCLFC +T KN+ HM + H+F +P + + DL GL++YL I +C+ CN
Sbjct: 245 DCLFCSHHSRTLMKNVAHMTKVHSFFIPDIEYLVDLRGLIKYLGEKIGVGKICIWCNEKG 304
Query: 172 KQFDERRSVRSHMKHMNHMRLYFHLESGGD--DLCDFYSNLPQPVVNLNALSDNMEIEAV 345
K F +V++HM +H +L+ ++ + D DF S+ P + +ME+ A
Sbjct: 305 KSFYSTEAVQAHMNDKSHCKLFTDGDAALEFADFYDFRSSYPD-----HKEGQDMEVPAE 359
Query: 346 LPNGKRV 366
LP+ + +
Sbjct: 360 LPSDREL 366
>sp|Q7TM96|Z622_RAT Zinc finger protein 622 (Ac1133) (Ac2-061)
Length = 386
Score = 62.8 bits (151), Expect = 8e-10
Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 5/102 (4%)
Frame = +1
Query: 1 DCLFCKLSFKTTEKNLNHMHQNHNFTLPYPQCISDLEGLMEYLVCLIDEYHVCLQCN--- 171
DCLFC + KN+ HM + H+F +P + +SDL+GL++YL + +CL CN
Sbjct: 246 DCLFCSHHSSSLVKNVAHMTKVHSFFIPDIEYLSDLKGLIKYLGEKVGVGKICLWCNEKG 305
Query: 172 KQFDERRSVRSHMKHMNHMRLYFHLESGGD--DLCDFYSNLP 291
K F +V++HM +H +L+ ++ + D DF S+ P
Sbjct: 306 KSFYSTEAVQAHMNDKSHCKLFTDGDAALEFADFYDFRSSYP 347
>sp|Q9NRM2|ZN277_HUMAN Zinc finger protein 277
Length = 438
Score = 41.6 bits (96), Expect = 0.002
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +1
Query: 4 CLFCKLSFKTTEKN-LNHMHQNHNFTLPYPQCISDLEGLMEYLVCLIDEYHVCLQCNKQF 180
C+FC F LNHM + H F + P I + + L +D CL C K F
Sbjct: 163 CMFCNEEFLGNRSVILNHMAREHAFNIGLPDNIVNCNEFLCTLQKKLDNLQ-CLYCEKTF 221
Query: 181 DERRSVRSHMKHMNHMRL 234
++ +++ HM+ H ++
Sbjct: 222 RDKNTLKDHMRKKQHRKI 239
Score = 34.7 bits (78), Expect = 0.24
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Frame = +1
Query: 4 CLFCKLSFKTTEKNLNHMHQNHNFTLPYPQCISDLEGLMEYLVCLIDEYHV----CLQCN 171
CLFC+ +T EK HM H F L + L + + V C C+
Sbjct: 292 CLFCEKQAETIEKLYVHMEDAHEFDLLKIKSELGLNFYQQVKLVNFIRRQVHQCRCYGCH 351
Query: 172 KQFDERRSVRSHMKHMNHMRL 234
+F + +R+HM+ H L
Sbjct: 352 VKFKSKADLRTHMEETKHTSL 372
>sp|Q9UTL5|TF3A_SCHPO Transcription factor IIIA (Factor A) (TFIIIA)
Length = 374
Score = 34.3 bits (77), Expect = 0.31
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Frame = +1
Query: 13 CKLSFKTTEKNLNHMHQNH----NFTLPYPQCISDLEGLMEY--LVCLIDEYHV--CLQC 168
C+L F T +K NH+++ H +++ P+ C+ EG ++ L I E HV C C
Sbjct: 151 CELRFATKQKLQNHVNRAHEKIISYSCPHESCVGH-EGFEKWSQLQNHIREAHVPSCSIC 209
Query: 169 NKQFDERRSVRSHM 210
+QF +R H+
Sbjct: 210 GRQFKTAAHLRHHV 223
>sp|P28167|ZFH2_DROME Zinc finger protein 2 (Zinc finger homeodomain protein 2)
Length = 3005
Score = 33.9 bits (76), Expect = 0.41
Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 26/95 (27%)
Frame = +1
Query: 4 CLFCKLSFKTTEKNLNHMHQNHNFTL----------------------PYPQCISDLEGL 117
C C+ SFK E+ L H QN +F+L P IS + L
Sbjct: 1440 CQQCEASFKHEEQLLKHAQQNQHFSLQNGEYLCLAASHISRPCFMTFRTIPTMISHFQDL 1499
Query: 118 MEYLVCLIDEYHV----CLQCNKQFDERRSVRSHM 210
++ +I E HV C QC+ F + + +HM
Sbjct: 1500 --HMSLIISERHVYKYRCKQCSLAFKTQEKLTTHM 1532
>sp|Q9BQA5|MIZF_HUMAN MBD2-interacting zinc finger protein (Methyl-CpG-binding protein
2-interacting zinc finger protein)
Length = 517
Score = 33.1 bits (74), Expect = 0.69
Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 8/106 (7%)
Frame = +1
Query: 13 CKLSFKTTEKNLNHMHQN-HNFTLPYPQCISDLEGLMEYLVCL-----IDEYHV-CLQCN 171
C +FK K H+ + + P C ++L + +D+ H C C+
Sbjct: 176 CTCTFKDRSKLREHLRSHTQEKVVACPTCGGMFANNTKFLDHIRRQTSLDQQHFQCSHCS 235
Query: 172 KQFDERRSVRSHMK-HMNHMRLYFHLESGGDDLCDFYSNLPQPVVN 306
K+F R +R HM+ H+NH + LCD LP + N
Sbjct: 236 KRFATERLLRDHMRNHVNHYKC---------PLCDMTCPLPSSLRN 272
>sp|Q9HJD4|FEN_THEAC Flap structure-specific endonuclease
Length = 336
Score = 33.1 bits (74), Expect = 0.69
Identities = 38/154 (24%), Positives = 63/154 (40%), Gaps = 7/154 (4%)
Frame = +1
Query: 193 SVRSHMKHMNHMRLYFHLESGGDDLCDFYSNL----PQPVVNLNALSDNMEIEAVLPNGK 360
S R MK L +E G +DL +YS + PQ V + L D M I V +
Sbjct: 92 SERQMMKEKAKAELEEAIERGEEDLRQYYSRINYITPQIVDDTKKLLDYMGIPYV--DAP 149
Query: 361 RVGNRTMNVYFKQNLTGLTNPNNLSITSGPEKAKMSLISSGRYGQLATQTKITPKEKKYK 540
G + K+N+ G+ + + + G K + GR + P++ YK
Sbjct: 150 SEGEAQASYMTKKNVDGVISQDYDCLLFGARKILRNFAIYGR--------RKVPRKNIYK 201
Query: 541 TLEARYV---QLRSSRYSNFQQHFRAQILM*TEY 633
T+ Y+ ++ S+ N Q IL+ T++
Sbjct: 202 TVYPEYIILDEVLSANQINQDQLIGIGILVGTDF 235
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,805,819
Number of Sequences: 369166
Number of extensions: 1384852
Number of successful extensions: 4627
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4592
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5782011865
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)