Planaria EST Database


DrC_01751

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01751
         (787 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8VH51|RNPC2_MOUSE  RNA-binding region containing protein...   182   9e-46
sp|Q14498|RNPC2_HUMAN  RNA-binding region containing protein...   180   3e-45
sp|Q86U06|RBM23_HUMAN  Probable RNA-binding protein 23 (RNA-...   171   3e-42
sp|P04147|PABP_YEAST  Polyadenylate-binding protein, cytopla...    79   1e-14
sp|Q99020|ROAA_MOUSE  Heterogeneous nuclear ribonucleoprotei...    76   1e-13
sp|Q13310|PABP4_HUMAN  Polyadenylate-binding protein 4 (Poly...    76   1e-13
sp|P42731|PABP2_ARATH  Polyadenylate-binding protein 2 (Poly...    74   5e-13
sp|Q99729|ROAA_HUMAN  Heterogeneous nuclear ribonucleoprotei...    73   8e-13
sp|Q14103|HNRPD_HUMAN  Heterogeneous nuclear ribonucleoprote...    72   2e-12
sp|Q60668|HNRPD_MOUSE  Heterogeneous nuclear ribonucleoprote...    72   2e-12
>sp|Q8VH51|RNPC2_MOUSE RNA-binding region containing protein 2 (Coactivator of activating
           protein 1 and estrogen receptors) (Coactivator of AP-1
           and ERs) (Transcription coactivator CAPER)
          Length = 530

 Score =  182 bits (462), Expect = 9e-46
 Identities = 102/236 (43%), Positives = 144/236 (61%), Gaps = 9/236 (3%)
 Frame = +2

Query: 8   PIEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFSPVGKMDVVRLVLDNKTGKSRGVAFIQ 187
           PI+ LT EE+DART++  QL+ R+R RDLE+FFS VGK+  VR++ D  + +SRG+A+++
Sbjct: 141 PIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVE 200

Query: 188 FRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHP 367
           F DV SV  A+ L GQ+++GVPI ++   +EK RAA    N+      GP +L V +LH 
Sbjct: 201 FVDVSSVRLAIGLTGQRVLGVPIIVQASQAEKNRAA-AMANNLQKGSAGPMRLYVGSLHF 259

Query: 368 QINEQMIEEIFSPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQMNDFNLAGQ 544
            I E M+  IF P+G+I+ ++LM D   G S G  FI F   E AK  +EQ+N F LAG+
Sbjct: 260 NITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 319

Query: 545 LLKIAPVVEEGGLNEFG--------ENQGVSMTAADRLGLMAKLAVGTGLQVVPKA 688
            +K+  V E    +           E  G+ +    RL LMA+LA GTGLQ+ P A
Sbjct: 320 PMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAA 375
>sp|Q14498|RNPC2_HUMAN RNA-binding region containing protein 2 (Hepatocellular carcinoma
           protein 1) (Splicing factor HCC1)
          Length = 530

 Score =  180 bits (457), Expect = 3e-45
 Identities = 101/236 (42%), Positives = 144/236 (61%), Gaps = 9/236 (3%)
 Frame = +2

Query: 8   PIEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFSPVGKMDVVRLVLDNKTGKSRGVAFIQ 187
           PI+ LT EE+DART++  QL+ R+R RDLE+FFS VGK+  VR++ D  + +S+G+A+++
Sbjct: 141 PIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVE 200

Query: 188 FRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHP 367
           F DV SV  A+ L GQ+++GVPI ++   +EK RAA    N+      GP +L V +LH 
Sbjct: 201 FVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAA-AMANNLQKGSAGPMRLYVGSLHF 259

Query: 368 QINEQMIEEIFSPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQMNDFNLAGQ 544
            I E M+  IF P+G+I+ ++LM D   G S G  FI F   E AK  +EQ+N F LAG+
Sbjct: 260 NITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 319

Query: 545 LLKIAPVVEEGGLNEFG--------ENQGVSMTAADRLGLMAKLAVGTGLQVVPKA 688
            +K+  V E    +           E  G+ +    RL LMA+LA GTGLQ+ P A
Sbjct: 320 PMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAA 375
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 (RNA-binding motif protein 23)
           (RNA-binding region containing protein 4) (Splicing
           factor SF2)
          Length = 439

 Score =  171 bits (432), Expect = 3e-42
 Identities = 99/238 (41%), Positives = 147/238 (61%), Gaps = 6/238 (2%)
 Frame = +2

Query: 8   PIEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFSPVGKMDVVRLVLDNKTGKSRGVAFIQ 187
           P++ L+ EE+DART++  QL+ R+R RDLEDFFS VGK+  VR++ D  + +S+G+A+++
Sbjct: 154 PVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVE 213

Query: 188 FRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHP 367
           F +++SV  A+ L GQ+L+GVPI ++   +EK R A    N+      GP +L V +LH 
Sbjct: 214 FCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLA-AMANNLQKGNGGPMRLYVGSLHF 272

Query: 368 QINEQMIEEIFSPYGKIDELRLMKDI-RGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQ 544
            I E M+  IF P+GKID + LMKD   G S G  FI F   E A+  +EQ+N F LAG+
Sbjct: 273 NITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGR 332

Query: 545 LLKIAPVVE--EGGLN---EFGENQGVSMTAADRLGLMAKLAVGTGLQVVPKANSVQA 703
            +++  V E  +GG +     G+ +    +A  R  LMAKLA G G+Q+   A +  A
Sbjct: 333 PMRVGHVTERLDGGTDITFPDGDQELDLGSAGGRFQLMAKLAEGAGIQLPSTAAAAAA 390
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
           (Poly(A)-binding protein) (PABP) (ARS consensus binding
           protein ACBP-67) (Polyadenylate tail-binding protein)
          Length = 577

 Score = 79.3 bits (194), Expect = 1e-14
 Identities = 52/177 (29%), Positives = 86/177 (48%)
 Frame = +2

Query: 32  EKDARTIYIWQLSLRVRTRDLEDFFSPVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVN 211
           E  + ++Y+  L   V    L D FSP+G +  +R+  D  T  S G A++ F D E+  
Sbjct: 34  ENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGR 93

Query: 212 KALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIE 391
           KA+    ++L   PI+ R      CR      + S +  +G   + + NLHP I+ + + 
Sbjct: 94  KAI----EQLNYTPIKGRL-----CRIMWSQRDPS-LRKKGSGNIFIKNLHPDIDNKALY 143

Query: 392 EIFSPYGKIDELRLMKDIRGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAP 562
           + FS +G I   ++  D  G S G  F+ F +   AK  ++ +N   L GQ + +AP
Sbjct: 144 DTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAP 200

 Score = 62.0 bits (149), Expect = 2e-09
 Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 8/189 (4%)
 Frame = +2

Query: 17  QLTEEEKDARTIYIWQLSLRVRTRDLEDFFSPVGKMDVVRLVLDNKTGKSRGVAFIQFRD 196
           QL E +     +Y+  ++        ++ F+  G +    L  D   GK +G  F+ +  
Sbjct: 210 QLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKD-ADGKLKGFGFVNYEK 268

Query: 197 VESVNKALD-LNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFR-------GPTKLCV 352
            E   KA++ LN  +L G  + +     +  R     +   Y  +R           L V
Sbjct: 269 HEDAVKAVEALNDSELNGEKLYVGRAQKKNERMH--VLKKQYEAYRLEKMAKYQGVNLFV 326

Query: 353 SNLHPQINEQMIEEIFSPYGKIDELRLMKDIRGTSLGTAFILFRKGENAKNVVEQMNDFN 532
            NL   ++++ +EE F+PYG I   ++M+   G S G  F+ F   E A   + + N   
Sbjct: 327 KNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQI 386

Query: 533 LAGQLLKIA 559
           +AG+ L +A
Sbjct: 387 VAGKPLYVA 395

 Score = 52.8 bits (125), Expect = 1e-06
 Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
 Frame = +2

Query: 269 VSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFSPYGKIDELRLMKD-I 445
           +  ++ +AA G+ + S         L V +L P ++E  + +IFSP G +  +R+ +D I
Sbjct: 17  IQDDQKQAATGSESQSVE--NSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAI 74

Query: 446 RGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKI 556
             TSLG A++ F   E  +  +EQ+N   + G+L +I
Sbjct: 75  TKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRI 111
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)
           (CArG-binding factor-A) (CBF-A)
          Length = 285

 Score = 75.9 bits (185), Expect = 1e-13
 Identities = 50/167 (29%), Positives = 85/167 (50%), Gaps = 2/167 (1%)
 Frame = +2

Query: 23  TEEEKDARTIYIWQLSLRVRTRDLEDFFSPVGKMDVVRLVLDNKTGKSRGVAFIQFRDVE 202
           ++ E+DA  +++  LS     +DL+D+F+  G++    + +D  TG+SRG  FI F+D  
Sbjct: 68  SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSS 127

Query: 203 SVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPT-KLCVSNLHPQINE 379
           SV K LD    +L G     R +  +K  A +          + P  K+ V  L+P+  E
Sbjct: 128 SVEKVLDQKEHRLDG-----RVIDPKKAMAMK----------KDPVKKIFVGGLNPEATE 172

Query: 380 QMIEEIFSPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQ 517
           + I E F  +G+I+ + L  D +     G  FI F++ +  K V+E+
Sbjct: 173 EKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK 219
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 (Poly(A)-binding protein 4) (PABP
           4) (Inducible poly(A)-binding protein) (iPABP)
           (Activated-platelet protein 1) (APP-1)
          Length = 644

 Score = 75.9 bits (185), Expect = 1e-13
 Identities = 47/169 (27%), Positives = 88/169 (52%), Gaps = 2/169 (1%)
 Frame = +2

Query: 50  IYIWQLSLRVRTRDLEDFFSPVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALD-L 226
           ++I  L   +  + L D FS  G +   ++V D     S+G AF+ F   E+ +KA++ +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158

Query: 227 NGQKLMGVPIQIRTVSSEKCRAAE-GTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFS 403
           NG  L    + +    S K R AE G     +      T + + N   +++++ ++E+FS
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEF------TNVYIKNFGEEVDDESLKELFS 212

Query: 404 PYGKIDELRLMKDIRGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLL 550
            +GK   +++M+D  G S G  F+ + K E+A   VE+MN   ++G+++
Sbjct: 213 QFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261

 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 1/160 (0%)
 Frame = +2

Query: 47  TIYIWQLSLRVRTRDLEDFFSPVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALD- 223
           ++Y+  L   V    L + FSP G +  +R+  D  T +S G A++ F+      +ALD 
Sbjct: 12  SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71

Query: 224 LNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFS 403
           +N   + G PI+I     +      G  N           + + NL   I+ + + + FS
Sbjct: 72  MNFDVIKGKPIRIMWSQRDPSLRKSGVGN-----------VFIKNLDKSIDNKALYDTFS 120

Query: 404 PYGKIDELRLMKDIRGTSLGTAFILFRKGENAKNVVEQMN 523
            +G I   +++ D  G S G AF+ F   E A   +E+MN
Sbjct: 121 AFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159

 Score = 38.1 bits (87), Expect = 0.028
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
 Frame = +2

Query: 5   RPIEQLTEEE---KDARTIYIWQLSLRVRTRDLEDFFSPVGKMDVVRLVLDNKTGKSRGV 175
           R  EQL +E         +YI  L   +    L   FSP G +   +++L++  G+S+G 
Sbjct: 278 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGF 335

Query: 176 AFIQFRDVESVNKAL-DLNGQKLMGVPIQIRTVSSEKCRAAEGT 304
            F+ F   E   KA+ ++NG+ +   P+ +     ++ R A  T
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLT 379
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 (Poly(A)-binding protein 2) (PABP
           2)
          Length = 629

 Score = 73.9 bits (180), Expect = 5e-13
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 14/186 (7%)
 Frame = +2

Query: 50  IYIWQLSLRVRTRDLEDFFSPVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALD-L 226
           +Y+  L+      DL++ F   GK+    ++ D + GKS+G  F+ F + +   +A++ L
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESL 275

Query: 227 NG-------------QKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHP 367
           NG             QK      ++R    +  + A     SS +Y        V NL P
Sbjct: 276 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLY--------VKNLDP 327

Query: 368 QINEQMIEEIFSPYGKIDELRLMKDIRGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQL 547
            I+++ ++EIFSP+G +   ++M+D  GTS G+ F+ F   E A   + Q     L+G++
Sbjct: 328 SISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQ-----LSGKM 382

Query: 548 LKIAPV 565
           ++  P+
Sbjct: 383 IESKPL 388

 Score = 65.9 bits (159), Expect = 1e-10
 Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 1/162 (0%)
 Frame = +2

Query: 41  ARTIYIWQLSLRVRTRDLEDFFSPVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKAL 220
           A  I+I  L   +  + L D FS  G +   ++ +D+ +G+S+G  F+Q+ + ES  KA+
Sbjct: 123 AGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAI 181

Query: 221 D-LNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEI 397
           + LNG  L    + +      + R  + T N +       T + V NL     +  ++  
Sbjct: 182 EKLNGMLLNDKQVYVGPFLRRQER--DSTANKTKF-----TNVYVKNLAESTTDDDLKNA 234

Query: 398 FSPYGKIDELRLMKDIRGTSLGTAFILFRKGENAKNVVEQMN 523
           F  YGKI    +MKD  G S G  F+ F   ++A   VE +N
Sbjct: 235 FGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 276
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B) (APOBEC-1
           binding protein 1) (ABBP-1)
          Length = 331

 Score = 73.2 bits (178), Expect = 8e-13
 Identities = 51/168 (30%), Positives = 85/168 (50%), Gaps = 3/168 (1%)
 Frame = +2

Query: 23  TEEEKDARTIYIWQLSLRVRTRDLEDFFSPVGKMDVVRLVLDNKTGKSRGVAFIQFRDVE 202
           ++ E+DA  +++  LS     +DL+D+F+  G++    + +D  TG+SRG  FI F+D  
Sbjct: 61  SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAA 120

Query: 203 SVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPT-KLCVSNLHPQI-N 376
           SV K LD    +L G     R +  +K  A +          + P  K+ V  L+P+   
Sbjct: 121 SVEKVLDQKEHRLDG-----RVIDPKKAMAMK----------KDPVKKIFVGGLNPESPT 165

Query: 377 EQMIEEIFSPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQ 517
           E+ I E F  +G+I+ + L  D +     G  FI F++ E  K V+E+
Sbjct: 166 EEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK 213
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) (AU-rich
           element RNA-binding protein 1)
          Length = 355

 Score = 72.0 bits (175), Expect = 2e-12
 Identities = 47/163 (28%), Positives = 79/163 (48%), Gaps = 1/163 (0%)
 Frame = +2

Query: 32  EKDARTIYIWQLSLRVRTRDLEDFFSPVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVN 211
           +++   ++I  LS     +DL+D+FS  G++    L LD  TG+SRG  F+ F++ ESV+
Sbjct: 93  QREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 152

Query: 212 KALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIE 391
           K +D    KL G  I  +   + K +                 K+ V  L P   E+ I 
Sbjct: 153 KVMDQKEHKLNGKVIDPKRAKAMKTK-------------EPVKKIFVGGLSPDTPEEKIR 199

Query: 392 EIFSPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQ 517
           E F  +G+++ + L  D +     G  FI F++ E  K ++E+
Sbjct: 200 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) (AU-rich
           element RNA-binding protein 1)
          Length = 355

 Score = 72.0 bits (175), Expect = 2e-12
 Identities = 47/163 (28%), Positives = 79/163 (48%), Gaps = 1/163 (0%)
 Frame = +2

Query: 32  EKDARTIYIWQLSLRVRTRDLEDFFSPVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVN 211
           +++   ++I  LS     +DL+D+FS  G++    L LD  TG+SRG  F+ F++ ESV+
Sbjct: 93  QREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 152

Query: 212 KALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIE 391
           K +D    KL G  I  +   + K +                 K+ V  L P   E+ I 
Sbjct: 153 KVMDQKEHKLNGKVIDPKRAKAMKTK-------------EPVKKIFVGGLSPDTPEEKIR 199

Query: 392 EIFSPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQ 517
           E F  +G+++ + L  D +     G  FI F++ E  K ++E+
Sbjct: 200 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,935,353
Number of Sequences: 369166
Number of extensions: 1707778
Number of successful extensions: 4487
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4382
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7405750800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)