Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_J24
(787 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8VH51|RNPC2_MOUSE RNA-binding region containing protein... 182 9e-46
sp|Q14498|RNPC2_HUMAN RNA-binding region containing protein... 180 3e-45
sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 (RNA-... 171 3e-42
sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytopla... 79 1e-14
sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotei... 76 1e-13
sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 (Poly... 76 1e-13
sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 (Poly... 74 5e-13
sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotei... 73 8e-13
sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprote... 72 2e-12
sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprote... 72 2e-12
>sp|Q8VH51|RNPC2_MOUSE RNA-binding region containing protein 2 (Coactivator of activating
protein 1 and estrogen receptors) (Coactivator of AP-1
and ERs) (Transcription coactivator CAPER)
Length = 530
Score = 182 bits (462), Expect = 9e-46
Identities = 102/236 (43%), Positives = 144/236 (61%), Gaps = 9/236 (3%)
Frame = +2
Query: 8 PIEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFSPVGKMDVVRLVLDNKTGKSRGVAFIQ 187
PI+ LT EE+DART++ QL+ R+R RDLE+FFS VGK+ VR++ D + +SRG+A+++
Sbjct: 141 PIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVE 200
Query: 188 FRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHP 367
F DV SV A+ L GQ+++GVPI ++ +EK RAA N+ GP +L V +LH
Sbjct: 201 FVDVSSVRLAIGLTGQRVLGVPIIVQASQAEKNRAA-AMANNLQKGSAGPMRLYVGSLHF 259
Query: 368 QINEQMIEEIFSPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQMNDFNLAGQ 544
I E M+ IF P+G+I+ ++LM D G S G FI F E AK +EQ+N F LAG+
Sbjct: 260 NITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 319
Query: 545 LLKIAPVVEEGGLNEFG--------ENQGVSMTAADRLGLMAKLAVGTGLQVVPKA 688
+K+ V E + E G+ + RL LMA+LA GTGLQ+ P A
Sbjct: 320 PMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAA 375
>sp|Q14498|RNPC2_HUMAN RNA-binding region containing protein 2 (Hepatocellular carcinoma
protein 1) (Splicing factor HCC1)
Length = 530
Score = 180 bits (457), Expect = 3e-45
Identities = 101/236 (42%), Positives = 144/236 (61%), Gaps = 9/236 (3%)
Frame = +2
Query: 8 PIEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFSPVGKMDVVRLVLDNKTGKSRGVAFIQ 187
PI+ LT EE+DART++ QL+ R+R RDLE+FFS VGK+ VR++ D + +S+G+A+++
Sbjct: 141 PIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVE 200
Query: 188 FRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHP 367
F DV SV A+ L GQ+++GVPI ++ +EK RAA N+ GP +L V +LH
Sbjct: 201 FVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAA-AMANNLQKGSAGPMRLYVGSLHF 259
Query: 368 QINEQMIEEIFSPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQMNDFNLAGQ 544
I E M+ IF P+G+I+ ++LM D G S G FI F E AK +EQ+N F LAG+
Sbjct: 260 NITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 319
Query: 545 LLKIAPVVEEGGLNEFG--------ENQGVSMTAADRLGLMAKLAVGTGLQVVPKA 688
+K+ V E + E G+ + RL LMA+LA GTGLQ+ P A
Sbjct: 320 PMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAA 375
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 (RNA-binding motif protein 23)
(RNA-binding region containing protein 4) (Splicing
factor SF2)
Length = 439
Score = 171 bits (432), Expect = 3e-42
Identities = 99/238 (41%), Positives = 147/238 (61%), Gaps = 6/238 (2%)
Frame = +2
Query: 8 PIEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFSPVGKMDVVRLVLDNKTGKSRGVAFIQ 187
P++ L+ EE+DART++ QL+ R+R RDLEDFFS VGK+ VR++ D + +S+G+A+++
Sbjct: 154 PVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVE 213
Query: 188 FRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHP 367
F +++SV A+ L GQ+L+GVPI ++ +EK R A N+ GP +L V +LH
Sbjct: 214 FCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLA-AMANNLQKGNGGPMRLYVGSLHF 272
Query: 368 QINEQMIEEIFSPYGKIDELRLMKDI-RGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQ 544
I E M+ IF P+GKID + LMKD G S G FI F E A+ +EQ+N F LAG+
Sbjct: 273 NITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGR 332
Query: 545 LLKIAPVVE--EGGLN---EFGENQGVSMTAADRLGLMAKLAVGTGLQVVPKANSVQA 703
+++ V E +GG + G+ + +A R LMAKLA G G+Q+ A + A
Sbjct: 333 PMRVGHVTERLDGGTDITFPDGDQELDLGSAGGRFQLMAKLAEGAGIQLPSTAAAAAA 390
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
Length = 577
Score = 79.3 bits (194), Expect = 1e-14
Identities = 52/177 (29%), Positives = 86/177 (48%)
Frame = +2
Query: 32 EKDARTIYIWQLSLRVRTRDLEDFFSPVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVN 211
E + ++Y+ L V L D FSP+G + +R+ D T S G A++ F D E+
Sbjct: 34 ENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGR 93
Query: 212 KALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIE 391
KA+ ++L PI+ R CR + S + +G + + NLHP I+ + +
Sbjct: 94 KAI----EQLNYTPIKGRL-----CRIMWSQRDPS-LRKKGSGNIFIKNLHPDIDNKALY 143
Query: 392 EIFSPYGKIDELRLMKDIRGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAP 562
+ FS +G I ++ D G S G F+ F + AK ++ +N L GQ + +AP
Sbjct: 144 DTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAP 200
Score = 62.0 bits (149), Expect = 2e-09
Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 8/189 (4%)
Frame = +2
Query: 17 QLTEEEKDARTIYIWQLSLRVRTRDLEDFFSPVGKMDVVRLVLDNKTGKSRGVAFIQFRD 196
QL E + +Y+ ++ ++ F+ G + L D GK +G F+ +
Sbjct: 210 QLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKD-ADGKLKGFGFVNYEK 268
Query: 197 VESVNKALD-LNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFR-------GPTKLCV 352
E KA++ LN +L G + + + R + Y +R L V
Sbjct: 269 HEDAVKAVEALNDSELNGEKLYVGRAQKKNERMH--VLKKQYEAYRLEKMAKYQGVNLFV 326
Query: 353 SNLHPQINEQMIEEIFSPYGKIDELRLMKDIRGTSLGTAFILFRKGENAKNVVEQMNDFN 532
NL ++++ +EE F+PYG I ++M+ G S G F+ F E A + + N
Sbjct: 327 KNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQI 386
Query: 533 LAGQLLKIA 559
+AG+ L +A
Sbjct: 387 VAGKPLYVA 395
Score = 52.8 bits (125), Expect = 1e-06
Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Frame = +2
Query: 269 VSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFSPYGKIDELRLMKD-I 445
+ ++ +AA G+ + S L V +L P ++E + +IFSP G + +R+ +D I
Sbjct: 17 IQDDQKQAATGSESQSVE--NSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAI 74
Query: 446 RGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKI 556
TSLG A++ F E + +EQ+N + G+L +I
Sbjct: 75 TKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRI 111
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)
(CArG-binding factor-A) (CBF-A)
Length = 285
Score = 75.9 bits (185), Expect = 1e-13
Identities = 50/167 (29%), Positives = 85/167 (50%), Gaps = 2/167 (1%)
Frame = +2
Query: 23 TEEEKDARTIYIWQLSLRVRTRDLEDFFSPVGKMDVVRLVLDNKTGKSRGVAFIQFRDVE 202
++ E+DA +++ LS +DL+D+F+ G++ + +D TG+SRG FI F+D
Sbjct: 68 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSS 127
Query: 203 SVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPT-KLCVSNLHPQINE 379
SV K LD +L G R + +K A + + P K+ V L+P+ E
Sbjct: 128 SVEKVLDQKEHRLDG-----RVIDPKKAMAMK----------KDPVKKIFVGGLNPEATE 172
Query: 380 QMIEEIFSPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQ 517
+ I E F +G+I+ + L D + G FI F++ + K V+E+
Sbjct: 173 EKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK 219
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 (Poly(A)-binding protein 4) (PABP
4) (Inducible poly(A)-binding protein) (iPABP)
(Activated-platelet protein 1) (APP-1)
Length = 644
Score = 75.9 bits (185), Expect = 1e-13
Identities = 47/169 (27%), Positives = 88/169 (52%), Gaps = 2/169 (1%)
Frame = +2
Query: 50 IYIWQLSLRVRTRDLEDFFSPVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALD-L 226
++I L + + L D FS G + ++V D S+G AF+ F E+ +KA++ +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 227 NGQKLMGVPIQIRTVSSEKCRAAE-GTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFS 403
NG L + + S K R AE G + T + + N +++++ ++E+FS
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEF------TNVYIKNFGEEVDDESLKELFS 212
Query: 404 PYGKIDELRLMKDIRGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLL 550
+GK +++M+D G S G F+ + K E+A VE+MN ++G+++
Sbjct: 213 QFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Score = 58.5 bits (140), Expect = 2e-08
Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 1/160 (0%)
Frame = +2
Query: 47 TIYIWQLSLRVRTRDLEDFFSPVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALD- 223
++Y+ L V L + FSP G + +R+ D T +S G A++ F+ +ALD
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 224 LNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFS 403
+N + G PI+I + G N + + NL I+ + + + FS
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGN-----------VFIKNLDKSIDNKALYDTFS 120
Query: 404 PYGKIDELRLMKDIRGTSLGTAFILFRKGENAKNVVEQMN 523
+G I +++ D G S G AF+ F E A +E+MN
Sbjct: 121 AFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Score = 38.1 bits (87), Expect = 0.028
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Frame = +2
Query: 5 RPIEQLTEEE---KDARTIYIWQLSLRVRTRDLEDFFSPVGKMDVVRLVLDNKTGKSRGV 175
R EQL +E +YI L + L FSP G + +++L++ G+S+G
Sbjct: 278 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGF 335
Query: 176 AFIQFRDVESVNKAL-DLNGQKLMGVPIQIRTVSSEKCRAAEGT 304
F+ F E KA+ ++NG+ + P+ + ++ R A T
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLT 379
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 (Poly(A)-binding protein 2) (PABP
2)
Length = 629
Score = 73.9 bits (180), Expect = 5e-13
Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 14/186 (7%)
Frame = +2
Query: 50 IYIWQLSLRVRTRDLEDFFSPVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALD-L 226
+Y+ L+ DL++ F GK+ ++ D + GKS+G F+ F + + +A++ L
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESL 275
Query: 227 NG-------------QKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHP 367
NG QK ++R + + A SS +Y V NL P
Sbjct: 276 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLY--------VKNLDP 327
Query: 368 QINEQMIEEIFSPYGKIDELRLMKDIRGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQL 547
I+++ ++EIFSP+G + ++M+D GTS G+ F+ F E A + Q L+G++
Sbjct: 328 SISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQ-----LSGKM 382
Query: 548 LKIAPV 565
++ P+
Sbjct: 383 IESKPL 388
Score = 65.9 bits (159), Expect = 1e-10
Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 1/162 (0%)
Frame = +2
Query: 41 ARTIYIWQLSLRVRTRDLEDFFSPVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKAL 220
A I+I L + + L D FS G + ++ +D+ +G+S+G F+Q+ + ES KA+
Sbjct: 123 AGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAI 181
Query: 221 D-LNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEI 397
+ LNG L + + + R + T N + T + V NL + ++
Sbjct: 182 EKLNGMLLNDKQVYVGPFLRRQER--DSTANKTKF-----TNVYVKNLAESTTDDDLKNA 234
Query: 398 FSPYGKIDELRLMKDIRGTSLGTAFILFRKGENAKNVVEQMN 523
F YGKI +MKD G S G F+ F ++A VE +N
Sbjct: 235 FGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 276
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B) (APOBEC-1
binding protein 1) (ABBP-1)
Length = 331
Score = 73.2 bits (178), Expect = 8e-13
Identities = 51/168 (30%), Positives = 85/168 (50%), Gaps = 3/168 (1%)
Frame = +2
Query: 23 TEEEKDARTIYIWQLSLRVRTRDLEDFFSPVGKMDVVRLVLDNKTGKSRGVAFIQFRDVE 202
++ E+DA +++ LS +DL+D+F+ G++ + +D TG+SRG FI F+D
Sbjct: 61 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAA 120
Query: 203 SVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPT-KLCVSNLHPQI-N 376
SV K LD +L G R + +K A + + P K+ V L+P+
Sbjct: 121 SVEKVLDQKEHRLDG-----RVIDPKKAMAMK----------KDPVKKIFVGGLNPESPT 165
Query: 377 EQMIEEIFSPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQ 517
E+ I E F +G+I+ + L D + G FI F++ E K V+E+
Sbjct: 166 EEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK 213
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) (AU-rich
element RNA-binding protein 1)
Length = 355
Score = 72.0 bits (175), Expect = 2e-12
Identities = 47/163 (28%), Positives = 79/163 (48%), Gaps = 1/163 (0%)
Frame = +2
Query: 32 EKDARTIYIWQLSLRVRTRDLEDFFSPVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVN 211
+++ ++I LS +DL+D+FS G++ L LD TG+SRG F+ F++ ESV+
Sbjct: 93 QREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 152
Query: 212 KALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIE 391
K +D KL G I + + K + K+ V L P E+ I
Sbjct: 153 KVMDQKEHKLNGKVIDPKRAKAMKTK-------------EPVKKIFVGGLSPDTPEEKIR 199
Query: 392 EIFSPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQ 517
E F +G+++ + L D + G FI F++ E K ++E+
Sbjct: 200 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) (AU-rich
element RNA-binding protein 1)
Length = 355
Score = 72.0 bits (175), Expect = 2e-12
Identities = 47/163 (28%), Positives = 79/163 (48%), Gaps = 1/163 (0%)
Frame = +2
Query: 32 EKDARTIYIWQLSLRVRTRDLEDFFSPVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVN 211
+++ ++I LS +DL+D+FS G++ L LD TG+SRG F+ F++ ESV+
Sbjct: 93 QREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 152
Query: 212 KALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIE 391
K +D KL G I + + K + K+ V L P E+ I
Sbjct: 153 KVMDQKEHKLNGKVIDPKRAKAMKTK-------------EPVKKIFVGGLSPDTPEEKIR 199
Query: 392 EIFSPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQ 517
E F +G+++ + L D + G FI F++ E K ++E+
Sbjct: 200 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,935,353
Number of Sequences: 369166
Number of extensions: 1707778
Number of successful extensions: 4487
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4382
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7405750800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)