Planaria EST Database


DrC_01747

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01747
         (279 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O16023|ESC_MUSDO  Polycomb protein Esc (Extra sex combs p...    30   1.3  
sp|P97499|TEP1_MOUSE  Telomerase protein component 1 (Telome...    30   2.3  
sp|O75477|SPFH1_HUMAN  SPFH domain protein 1 precursor (Prot...    29   2.9  
sp|Q91X78|SPFH1_MOUSE  SPFH domain protein 1 precursor (KE04...    29   2.9  
sp|Q5RCJ9|SPFH1_PONPY  SPFH domain protein 1 precursor             29   2.9  
sp|Q9GYS1|MES6_CAEEL  Polycomb protein mes-6 (Maternal-effec...    28   5.0  
sp|P63236|GADC_SHIFL  Probable glutamate/gamma-aminobutyrate...    28   5.0  
sp|Q6DT83|MATK_HOTPA  Maturase K (Intron maturase)                 28   5.0  
sp|P58229|GADC_ECO57  Probable glutamate/gamma-aminobutyrate...    28   5.0  
sp|Q8FHG6|GADC_ECOL6  Probable glutamate/gamma-aminobutyrate...    28   5.0  
>sp|O16023|ESC_MUSDO Polycomb protein Esc (Extra sex combs protein)
          Length = 428

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 77  IRQTRFTNEAKILLCACDGGVIARFDR 157
           +RQT F+ +A +L+  CD G + R++R
Sbjct: 394 VRQTAFSRDATVLVWVCDDGTVWRWNR 420
>sp|P97499|TEP1_MOUSE Telomerase protein component 1 (Telomerase-associated protein 1)
            (Telomerase protein 1) (p240) (p80 homolog)
          Length = 2629

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 47   LNNKNGLPVTIRQTRFTNEAKILLCACDG 133
            LNN NG PV+I Q +  +E+ +L    DG
Sbjct: 2464 LNNPNGSPVSITQAKPESESSLLCATSDG 2492
>sp|O75477|SPFH1_HUMAN SPFH domain protein 1 precursor (Protein KE04)
          Length = 346

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 74  TIRQTRFTNEAKILLCACDGGVIARFDRI*IYSLICKYDCF 196
           +++ T  T+E K + C   GGV+   DRI + +++  Y  F
Sbjct: 61  SVQTTLQTDEVKNVPCGTSGGVMIYIDRIEVVNMLAPYAVF 101
>sp|Q91X78|SPFH1_MOUSE SPFH domain protein 1 precursor (KE04 protein homolog)
          Length = 346

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 74  TIRQTRFTNEAKILLCACDGGVIARFDRI*IYSLICKYDCF 196
           +++ T  T+E K + C   GGV+   DRI + +++  Y  F
Sbjct: 61  SVQTTLQTDEVKNVPCGTSGGVMIYIDRIEVVNMLAPYAVF 101
>sp|Q5RCJ9|SPFH1_PONPY SPFH domain protein 1 precursor
          Length = 346

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 74  TIRQTRFTNEAKILLCACDGGVIARFDRI*IYSLICKYDCF 196
           +++ T  T+E K + C   GGV+   DRI + +++  Y  F
Sbjct: 61  SVQTTLQTDEVKNVPCGTSGGVMIYIDRIEVVNMLAPYAVF 101
>sp|Q9GYS1|MES6_CAEEL Polycomb protein mes-6 (Maternal-effect sterile 6 protein) (ESC
           homolog)
          Length = 459

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 74  TIRQTRFTNEAKILLCACDGGVIARFDRI 160
           T+RQ  F+   + L+   D G + RFDR+
Sbjct: 419 TVRQASFSTCGRFLVLVTDEGFVCRFDRV 447
>sp|P63236|GADC_SHIFL Probable glutamate/gamma-aminobutyrate antiporter (Extreme acid
           sensitivity protein)
 sp|P63235|GADC_ECOLI Probable glutamate/gamma-aminobutyrate antiporter (Extreme acid
           sensitivity protein)
          Length = 511

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 23  DLKPQEFILNNKNGLPVT--IRQTRFTNEAKILLCACDGG 136
           +L P  F   NKNG+PVT  I Q   T+ A I+L    GG
Sbjct: 323 NLLPAAFAKMNKNGVPVTLVISQLVITSIALIILTNTGGG 362
>sp|Q6DT83|MATK_HOTPA Maturase K (Intron maturase)
          Length = 509

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
 Frame = -2

Query: 233 QTNLSFQKRN*R-----GNNHIYK*VNISIYGRSEQSHLRRKHIREF 108
           ++  SF K+N R      N H+Y+  +I  + R++ SHL  K  R F
Sbjct: 199 KSRFSFSKQNKRFLFFFSNFHVYEYESILAFLRNQSSHLHSKSYRPF 245
>sp|P58229|GADC_ECO57 Probable glutamate/gamma-aminobutyrate antiporter (Extreme acid
           sensitivity protein)
          Length = 511

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 23  DLKPQEFILNNKNGLPVT--IRQTRFTNEAKILLCACDGG 136
           +L P  F   NKNG+PVT  I Q   T+ A I+L    GG
Sbjct: 323 NLLPAAFAKMNKNGVPVTLVISQLVITSIALIILTNTGGG 362
>sp|Q8FHG6|GADC_ECOL6 Probable glutamate/gamma-aminobutyrate antiporter (Extreme acid
           sensitivity protein)
          Length = 511

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 23  DLKPQEFILNNKNGLPVT--IRQTRFTNEAKILLCACDGG 136
           +L P  F   NKNG+PVT  I Q   T+ A I+L    GG
Sbjct: 323 NLLPAAFAKMNKNGVPVTLVISQLVITSIALIILTNTGGG 362
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,929,619
Number of Sequences: 369166
Number of extensions: 463395
Number of successful extensions: 1277
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1277
length of database: 68,354,980
effective HSP length: 62
effective length of database: 56,901,410
effective search space used: 1707042300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)