Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_J06
(279 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O16023|ESC_MUSDO Polycomb protein Esc (Extra sex combs p... 30 1.3
sp|P97499|TEP1_MOUSE Telomerase protein component 1 (Telome... 30 2.3
sp|O75477|SPFH1_HUMAN SPFH domain protein 1 precursor (Prot... 29 2.9
sp|Q91X78|SPFH1_MOUSE SPFH domain protein 1 precursor (KE04... 29 2.9
sp|Q5RCJ9|SPFH1_PONPY SPFH domain protein 1 precursor 29 2.9
sp|Q9GYS1|MES6_CAEEL Polycomb protein mes-6 (Maternal-effec... 28 5.0
sp|P63236|GADC_SHIFL Probable glutamate/gamma-aminobutyrate... 28 5.0
sp|Q6DT83|MATK_HOTPA Maturase K (Intron maturase) 28 5.0
sp|P58229|GADC_ECO57 Probable glutamate/gamma-aminobutyrate... 28 5.0
sp|Q8FHG6|GADC_ECOL6 Probable glutamate/gamma-aminobutyrate... 28 5.0
>sp|O16023|ESC_MUSDO Polycomb protein Esc (Extra sex combs protein)
Length = 428
Score = 30.4 bits (67), Expect = 1.3
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 77 IRQTRFTNEAKILLCACDGGVIARFDR 157
+RQT F+ +A +L+ CD G + R++R
Sbjct: 394 VRQTAFSRDATVLVWVCDDGTVWRWNR 420
>sp|P97499|TEP1_MOUSE Telomerase protein component 1 (Telomerase-associated protein 1)
(Telomerase protein 1) (p240) (p80 homolog)
Length = 2629
Score = 29.6 bits (65), Expect = 2.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 47 LNNKNGLPVTIRQTRFTNEAKILLCACDG 133
LNN NG PV+I Q + +E+ +L DG
Sbjct: 2464 LNNPNGSPVSITQAKPESESSLLCATSDG 2492
>sp|O75477|SPFH1_HUMAN SPFH domain protein 1 precursor (Protein KE04)
Length = 346
Score = 29.3 bits (64), Expect = 2.9
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 74 TIRQTRFTNEAKILLCACDGGVIARFDRI*IYSLICKYDCF 196
+++ T T+E K + C GGV+ DRI + +++ Y F
Sbjct: 61 SVQTTLQTDEVKNVPCGTSGGVMIYIDRIEVVNMLAPYAVF 101
>sp|Q91X78|SPFH1_MOUSE SPFH domain protein 1 precursor (KE04 protein homolog)
Length = 346
Score = 29.3 bits (64), Expect = 2.9
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 74 TIRQTRFTNEAKILLCACDGGVIARFDRI*IYSLICKYDCF 196
+++ T T+E K + C GGV+ DRI + +++ Y F
Sbjct: 61 SVQTTLQTDEVKNVPCGTSGGVMIYIDRIEVVNMLAPYAVF 101
>sp|Q5RCJ9|SPFH1_PONPY SPFH domain protein 1 precursor
Length = 346
Score = 29.3 bits (64), Expect = 2.9
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 74 TIRQTRFTNEAKILLCACDGGVIARFDRI*IYSLICKYDCF 196
+++ T T+E K + C GGV+ DRI + +++ Y F
Sbjct: 61 SVQTTLQTDEVKNVPCGTSGGVMIYIDRIEVVNMLAPYAVF 101
>sp|Q9GYS1|MES6_CAEEL Polycomb protein mes-6 (Maternal-effect sterile 6 protein) (ESC
homolog)
Length = 459
Score = 28.5 bits (62), Expect = 5.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 74 TIRQTRFTNEAKILLCACDGGVIARFDRI 160
T+RQ F+ + L+ D G + RFDR+
Sbjct: 419 TVRQASFSTCGRFLVLVTDEGFVCRFDRV 447
>sp|P63236|GADC_SHIFL Probable glutamate/gamma-aminobutyrate antiporter (Extreme acid
sensitivity protein)
sp|P63235|GADC_ECOLI Probable glutamate/gamma-aminobutyrate antiporter (Extreme acid
sensitivity protein)
Length = 511
Score = 28.5 bits (62), Expect = 5.0
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +2
Query: 23 DLKPQEFILNNKNGLPVT--IRQTRFTNEAKILLCACDGG 136
+L P F NKNG+PVT I Q T+ A I+L GG
Sbjct: 323 NLLPAAFAKMNKNGVPVTLVISQLVITSIALIILTNTGGG 362
>sp|Q6DT83|MATK_HOTPA Maturase K (Intron maturase)
Length = 509
Score = 28.5 bits (62), Expect = 5.0
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = -2
Query: 233 QTNLSFQKRN*R-----GNNHIYK*VNISIYGRSEQSHLRRKHIREF 108
++ SF K+N R N H+Y+ +I + R++ SHL K R F
Sbjct: 199 KSRFSFSKQNKRFLFFFSNFHVYEYESILAFLRNQSSHLHSKSYRPF 245
>sp|P58229|GADC_ECO57 Probable glutamate/gamma-aminobutyrate antiporter (Extreme acid
sensitivity protein)
Length = 511
Score = 28.5 bits (62), Expect = 5.0
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +2
Query: 23 DLKPQEFILNNKNGLPVT--IRQTRFTNEAKILLCACDGG 136
+L P F NKNG+PVT I Q T+ A I+L GG
Sbjct: 323 NLLPAAFAKMNKNGVPVTLVISQLVITSIALIILTNTGGG 362
>sp|Q8FHG6|GADC_ECOL6 Probable glutamate/gamma-aminobutyrate antiporter (Extreme acid
sensitivity protein)
Length = 511
Score = 28.5 bits (62), Expect = 5.0
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +2
Query: 23 DLKPQEFILNNKNGLPVT--IRQTRFTNEAKILLCACDGG 136
+L P F NKNG+PVT I Q T+ A I+L GG
Sbjct: 323 NLLPAAFAKMNKNGVPVTLVISQLVITSIALIILTNTGGG 362
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,929,619
Number of Sequences: 369166
Number of extensions: 463395
Number of successful extensions: 1277
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1277
length of database: 68,354,980
effective HSP length: 62
effective length of database: 56,901,410
effective search space used: 1707042300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)