Planaria EST Database


DrC_01746

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01746
         (413 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5ZL19|STX6_CHICK  Syntaxin-6                                   94   8e-20
sp|Q9JKK1|STX6_MOUSE  Syntaxin-6                                   94   1e-19
sp|Q63635|STX6_RAT  Syntaxin-6                                     94   1e-19
sp|O43752|STX6_HUMAN  Syntaxin-6                                   92   3e-19
sp|O60499|STX10_HUMAN  Syntaxin-10 (Syn10)                         89   5e-18
sp|P83528|STX5_CAEEL  Putative syntaxin C15C7.1                    87   1e-17
sp|O88983|STX8_MOUSE  Syntaxin-8 (Syntaxin-like protein 3I35)      52   4e-07
sp|Q9Z2Q7|STX8_RAT  Syntaxin-8                                     52   4e-07
sp|Q9UNK0|STX8_HUMAN  Syntaxin-8                                   52   6e-07
sp|Q9SF29|SY71_ARATH  Syntaxin 71 (AtSYP71)                        48   9e-06
>sp|Q5ZL19|STX6_CHICK Syntaxin-6
          Length = 254

 Score = 94.4 bits (233), Expect = 8e-20
 Identities = 43/87 (49%), Positives = 65/87 (74%), Gaps = 1/87 (1%)
 Frame = +3

Query: 66  NENFDQIRNQQEQLL-ENQDKQIDQLGSSVSVLKNISQKMNDELDSQALLLDDVGQEMDK 242
           N +F + +  Q+QL+ E QD+Q++ +  S+ VLKN+SQ++  EL+ QA++LDD   E+D 
Sbjct: 150 NSHFIEEQQAQQQLIVEQQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLDDFSHELDS 209

Query: 243 TESRMDASMKKMARLLHLTSDRRQWCA 323
           T SR+D  MKK+A++ H+TSDRRQWCA
Sbjct: 210 THSRLDNVMKKLAKVSHMTSDRRQWCA 236
>sp|Q9JKK1|STX6_MOUSE Syntaxin-6
          Length = 255

 Score = 93.6 bits (231), Expect = 1e-19
 Identities = 42/87 (48%), Positives = 66/87 (75%), Gaps = 1/87 (1%)
 Frame = +3

Query: 66  NENFDQIRNQQEQLL-ENQDKQIDQLGSSVSVLKNISQKMNDELDSQALLLDDVGQEMDK 242
           N +F + +  Q+QL+ E QD+Q++ +  S+ VLKN+SQ++  EL+ QA++LDD   E++ 
Sbjct: 151 NSHFIEEQQAQQQLIVEQQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLDDFSHELES 210

Query: 243 TESRMDASMKKMARLLHLTSDRRQWCA 323
           T+SR+D  MKK+A++ H+TSDRRQWCA
Sbjct: 211 TQSRLDNVMKKLAKVSHMTSDRRQWCA 237
>sp|Q63635|STX6_RAT Syntaxin-6
          Length = 255

 Score = 93.6 bits (231), Expect = 1e-19
 Identities = 42/87 (48%), Positives = 66/87 (75%), Gaps = 1/87 (1%)
 Frame = +3

Query: 66  NENFDQIRNQQEQLL-ENQDKQIDQLGSSVSVLKNISQKMNDELDSQALLLDDVGQEMDK 242
           N +F + +  Q+QL+ E QD+Q++ +  S+ VLKN+SQ++  EL+ QA++LDD   E++ 
Sbjct: 151 NSHFIEEQQAQQQLIVEQQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLDDFSHELES 210

Query: 243 TESRMDASMKKMARLLHLTSDRRQWCA 323
           T+SR+D  MKK+A++ H+TSDRRQWCA
Sbjct: 211 TQSRLDNVMKKLAKVSHMTSDRRQWCA 237
>sp|O43752|STX6_HUMAN Syntaxin-6
          Length = 255

 Score = 92.4 bits (228), Expect = 3e-19
 Identities = 42/95 (44%), Positives = 68/95 (71%), Gaps = 1/95 (1%)
 Frame = +3

Query: 42  IDDMKDSCNENFDQIRNQQEQLL-ENQDKQIDQLGSSVSVLKNISQKMNDELDSQALLLD 218
           +D      N +F + +  Q+QL+ E QD+Q++ +  S+ VLKN+SQ++  EL+ QA++L+
Sbjct: 143 LDRELQRANSHFIEEQQAQQQLIVEQQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLE 202

Query: 219 DVGQEMDKTESRMDASMKKMARLLHLTSDRRQWCA 323
           D   E++ T+SR+D  MKK+A++ H+TSDRRQWCA
Sbjct: 203 DFSHELESTQSRLDNVMKKLAKVSHMTSDRRQWCA 237
>sp|O60499|STX10_HUMAN Syntaxin-10 (Syn10)
          Length = 249

 Score = 88.6 bits (218), Expect = 5e-18
 Identities = 36/76 (47%), Positives = 59/76 (77%)
 Frame = +3

Query: 96  QEQLLENQDKQIDQLGSSVSVLKNISQKMNDELDSQALLLDDVGQEMDKTESRMDASMKK 275
           Q+ +++ QD+Q++ +  S+ VLK++S ++ +ELD Q ++LD   QEMD T+SRMD  ++K
Sbjct: 156 QQLIMDEQDQQLEMVSGSIQVLKHMSGRVGEELDEQGIMLDAFAQEMDHTQSRMDGVLRK 215

Query: 276 MARLLHLTSDRRQWCA 323
           +A++ H+TSDRRQWCA
Sbjct: 216 LAKVSHMTSDRRQWCA 231
>sp|P83528|STX5_CAEEL Putative syntaxin C15C7.1
          Length = 122

 Score = 87.4 bits (215), Expect = 1e-17
 Identities = 41/93 (44%), Positives = 66/93 (70%)
 Frame = +3

Query: 36  INIDDMKDSCNENFDQIRNQQEQLLENQDKQIDQLGSSVSVLKNISQKMNDELDSQALLL 215
           I+++DM  S N    QI  +QEQ+++ QD +++ +G+SV  L+ +S  + DELD Q+ +L
Sbjct: 14  ISLEDMPSSAN----QILTRQEQIIQEQDDELELVGNSVRTLRGMSSMIGDELDQQSTML 69

Query: 216 DDVGQEMDKTESRMDASMKKMARLLHLTSDRRQ 314
           DD+GQEM+ +E+R+D +MKKMA+L HL  +  Q
Sbjct: 70  DDLGQEMEYSETRLDTAMKKMAKLTHLEDESSQ 102
>sp|O88983|STX8_MOUSE Syntaxin-8 (Syntaxin-like protein 3I35)
          Length = 236

 Score = 52.4 bits (124), Expect = 4e-07
 Identities = 21/68 (30%), Positives = 44/68 (64%)
 Frame = +3

Query: 75  FDQIRNQQEQLLENQDKQIDQLGSSVSVLKNISQKMNDELDSQALLLDDVGQEMDKTESR 254
           FD+IR QQ+++++ QD  +D L S +S  K + Q++ +ELD Q  ++DD+   ++ T+ +
Sbjct: 137 FDEIRQQQQKIIQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEK 196

Query: 255 MDASMKKM 278
           +    +++
Sbjct: 197 LRTEARRV 204
>sp|Q9Z2Q7|STX8_RAT Syntaxin-8
          Length = 236

 Score = 52.4 bits (124), Expect = 4e-07
 Identities = 21/68 (30%), Positives = 44/68 (64%)
 Frame = +3

Query: 75  FDQIRNQQEQLLENQDKQIDQLGSSVSVLKNISQKMNDELDSQALLLDDVGQEMDKTESR 254
           FD+IR QQ+++++ QD  +D L S +S  K + Q++ +ELD Q  ++DD+   ++ T+ +
Sbjct: 137 FDEIRQQQQKIIQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEK 196

Query: 255 MDASMKKM 278
           +    +++
Sbjct: 197 LRTEARRV 204
>sp|Q9UNK0|STX8_HUMAN Syntaxin-8
          Length = 236

 Score = 51.6 bits (122), Expect = 6e-07
 Identities = 21/61 (34%), Positives = 41/61 (67%)
 Frame = +3

Query: 75  FDQIRNQQEQLLENQDKQIDQLGSSVSVLKNISQKMNDELDSQALLLDDVGQEMDKTESR 254
           FD+IR QQ+++++ QD  +D L S +S  K + Q++ +ELD Q  ++DD+   ++ T+ +
Sbjct: 137 FDEIRQQQQKIIQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEK 196

Query: 255 M 257
           +
Sbjct: 197 L 197
>sp|Q9SF29|SY71_ARATH Syntaxin 71 (AtSYP71)
          Length = 266

 Score = 47.8 bits (112), Expect = 9e-06
 Identities = 24/92 (26%), Positives = 47/92 (51%)
 Frame = +3

Query: 45  DDMKDSCNENFDQIRNQQEQLLENQDKQIDQLGSSVSVLKNISQKMNDELDSQALLLDDV 224
           DD     NE+  Q R + E     Q++ +D +   +  LKN++  MN+ELD Q  L+D++
Sbjct: 155 DDYFQESNES-SQFRQEYEMRKIKQEQGLDMISEGLDALKNMASDMNEELDRQVPLMDEI 213

Query: 225 GQEMDKTESRMDASMKKMARLLHLTSDRRQWC 320
             ++D+  S +  +  ++   ++     R +C
Sbjct: 214 DTKVDRATSDLKNTNVRLKDTVNQLRSSRNFC 245
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,638,021
Number of Sequences: 369166
Number of extensions: 659931
Number of successful extensions: 2937
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2920
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1902516170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)