Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_J04
(413 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5ZL19|STX6_CHICK Syntaxin-6 94 8e-20
sp|Q9JKK1|STX6_MOUSE Syntaxin-6 94 1e-19
sp|Q63635|STX6_RAT Syntaxin-6 94 1e-19
sp|O43752|STX6_HUMAN Syntaxin-6 92 3e-19
sp|O60499|STX10_HUMAN Syntaxin-10 (Syn10) 89 5e-18
sp|P83528|STX5_CAEEL Putative syntaxin C15C7.1 87 1e-17
sp|O88983|STX8_MOUSE Syntaxin-8 (Syntaxin-like protein 3I35) 52 4e-07
sp|Q9Z2Q7|STX8_RAT Syntaxin-8 52 4e-07
sp|Q9UNK0|STX8_HUMAN Syntaxin-8 52 6e-07
sp|Q9SF29|SY71_ARATH Syntaxin 71 (AtSYP71) 48 9e-06
>sp|Q5ZL19|STX6_CHICK Syntaxin-6
Length = 254
Score = 94.4 bits (233), Expect = 8e-20
Identities = 43/87 (49%), Positives = 65/87 (74%), Gaps = 1/87 (1%)
Frame = +3
Query: 66 NENFDQIRNQQEQLL-ENQDKQIDQLGSSVSVLKNISQKMNDELDSQALLLDDVGQEMDK 242
N +F + + Q+QL+ E QD+Q++ + S+ VLKN+SQ++ EL+ QA++LDD E+D
Sbjct: 150 NSHFIEEQQAQQQLIVEQQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLDDFSHELDS 209
Query: 243 TESRMDASMKKMARLLHLTSDRRQWCA 323
T SR+D MKK+A++ H+TSDRRQWCA
Sbjct: 210 THSRLDNVMKKLAKVSHMTSDRRQWCA 236
>sp|Q9JKK1|STX6_MOUSE Syntaxin-6
Length = 255
Score = 93.6 bits (231), Expect = 1e-19
Identities = 42/87 (48%), Positives = 66/87 (75%), Gaps = 1/87 (1%)
Frame = +3
Query: 66 NENFDQIRNQQEQLL-ENQDKQIDQLGSSVSVLKNISQKMNDELDSQALLLDDVGQEMDK 242
N +F + + Q+QL+ E QD+Q++ + S+ VLKN+SQ++ EL+ QA++LDD E++
Sbjct: 151 NSHFIEEQQAQQQLIVEQQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLDDFSHELES 210
Query: 243 TESRMDASMKKMARLLHLTSDRRQWCA 323
T+SR+D MKK+A++ H+TSDRRQWCA
Sbjct: 211 TQSRLDNVMKKLAKVSHMTSDRRQWCA 237
>sp|Q63635|STX6_RAT Syntaxin-6
Length = 255
Score = 93.6 bits (231), Expect = 1e-19
Identities = 42/87 (48%), Positives = 66/87 (75%), Gaps = 1/87 (1%)
Frame = +3
Query: 66 NENFDQIRNQQEQLL-ENQDKQIDQLGSSVSVLKNISQKMNDELDSQALLLDDVGQEMDK 242
N +F + + Q+QL+ E QD+Q++ + S+ VLKN+SQ++ EL+ QA++LDD E++
Sbjct: 151 NSHFIEEQQAQQQLIVEQQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLDDFSHELES 210
Query: 243 TESRMDASMKKMARLLHLTSDRRQWCA 323
T+SR+D MKK+A++ H+TSDRRQWCA
Sbjct: 211 TQSRLDNVMKKLAKVSHMTSDRRQWCA 237
>sp|O43752|STX6_HUMAN Syntaxin-6
Length = 255
Score = 92.4 bits (228), Expect = 3e-19
Identities = 42/95 (44%), Positives = 68/95 (71%), Gaps = 1/95 (1%)
Frame = +3
Query: 42 IDDMKDSCNENFDQIRNQQEQLL-ENQDKQIDQLGSSVSVLKNISQKMNDELDSQALLLD 218
+D N +F + + Q+QL+ E QD+Q++ + S+ VLKN+SQ++ EL+ QA++L+
Sbjct: 143 LDRELQRANSHFIEEQQAQQQLIVEQQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLE 202
Query: 219 DVGQEMDKTESRMDASMKKMARLLHLTSDRRQWCA 323
D E++ T+SR+D MKK+A++ H+TSDRRQWCA
Sbjct: 203 DFSHELESTQSRLDNVMKKLAKVSHMTSDRRQWCA 237
>sp|O60499|STX10_HUMAN Syntaxin-10 (Syn10)
Length = 249
Score = 88.6 bits (218), Expect = 5e-18
Identities = 36/76 (47%), Positives = 59/76 (77%)
Frame = +3
Query: 96 QEQLLENQDKQIDQLGSSVSVLKNISQKMNDELDSQALLLDDVGQEMDKTESRMDASMKK 275
Q+ +++ QD+Q++ + S+ VLK++S ++ +ELD Q ++LD QEMD T+SRMD ++K
Sbjct: 156 QQLIMDEQDQQLEMVSGSIQVLKHMSGRVGEELDEQGIMLDAFAQEMDHTQSRMDGVLRK 215
Query: 276 MARLLHLTSDRRQWCA 323
+A++ H+TSDRRQWCA
Sbjct: 216 LAKVSHMTSDRRQWCA 231
>sp|P83528|STX5_CAEEL Putative syntaxin C15C7.1
Length = 122
Score = 87.4 bits (215), Expect = 1e-17
Identities = 41/93 (44%), Positives = 66/93 (70%)
Frame = +3
Query: 36 INIDDMKDSCNENFDQIRNQQEQLLENQDKQIDQLGSSVSVLKNISQKMNDELDSQALLL 215
I+++DM S N QI +QEQ+++ QD +++ +G+SV L+ +S + DELD Q+ +L
Sbjct: 14 ISLEDMPSSAN----QILTRQEQIIQEQDDELELVGNSVRTLRGMSSMIGDELDQQSTML 69
Query: 216 DDVGQEMDKTESRMDASMKKMARLLHLTSDRRQ 314
DD+GQEM+ +E+R+D +MKKMA+L HL + Q
Sbjct: 70 DDLGQEMEYSETRLDTAMKKMAKLTHLEDESSQ 102
>sp|O88983|STX8_MOUSE Syntaxin-8 (Syntaxin-like protein 3I35)
Length = 236
Score = 52.4 bits (124), Expect = 4e-07
Identities = 21/68 (30%), Positives = 44/68 (64%)
Frame = +3
Query: 75 FDQIRNQQEQLLENQDKQIDQLGSSVSVLKNISQKMNDELDSQALLLDDVGQEMDKTESR 254
FD+IR QQ+++++ QD +D L S +S K + Q++ +ELD Q ++DD+ ++ T+ +
Sbjct: 137 FDEIRQQQQKIIQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEK 196
Query: 255 MDASMKKM 278
+ +++
Sbjct: 197 LRTEARRV 204
>sp|Q9Z2Q7|STX8_RAT Syntaxin-8
Length = 236
Score = 52.4 bits (124), Expect = 4e-07
Identities = 21/68 (30%), Positives = 44/68 (64%)
Frame = +3
Query: 75 FDQIRNQQEQLLENQDKQIDQLGSSVSVLKNISQKMNDELDSQALLLDDVGQEMDKTESR 254
FD+IR QQ+++++ QD +D L S +S K + Q++ +ELD Q ++DD+ ++ T+ +
Sbjct: 137 FDEIRQQQQKIIQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEK 196
Query: 255 MDASMKKM 278
+ +++
Sbjct: 197 LRTEARRV 204
>sp|Q9UNK0|STX8_HUMAN Syntaxin-8
Length = 236
Score = 51.6 bits (122), Expect = 6e-07
Identities = 21/61 (34%), Positives = 41/61 (67%)
Frame = +3
Query: 75 FDQIRNQQEQLLENQDKQIDQLGSSVSVLKNISQKMNDELDSQALLLDDVGQEMDKTESR 254
FD+IR QQ+++++ QD +D L S +S K + Q++ +ELD Q ++DD+ ++ T+ +
Sbjct: 137 FDEIRQQQQKIIQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEK 196
Query: 255 M 257
+
Sbjct: 197 L 197
>sp|Q9SF29|SY71_ARATH Syntaxin 71 (AtSYP71)
Length = 266
Score = 47.8 bits (112), Expect = 9e-06
Identities = 24/92 (26%), Positives = 47/92 (51%)
Frame = +3
Query: 45 DDMKDSCNENFDQIRNQQEQLLENQDKQIDQLGSSVSVLKNISQKMNDELDSQALLLDDV 224
DD NE+ Q R + E Q++ +D + + LKN++ MN+ELD Q L+D++
Sbjct: 155 DDYFQESNES-SQFRQEYEMRKIKQEQGLDMISEGLDALKNMASDMNEELDRQVPLMDEI 213
Query: 225 GQEMDKTESRMDASMKKMARLLHLTSDRRQWC 320
++D+ S + + ++ ++ R +C
Sbjct: 214 DTKVDRATSDLKNTNVRLKDTVNQLRSSRNFC 245
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,638,021
Number of Sequences: 369166
Number of extensions: 659931
Number of successful extensions: 2937
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2920
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1902516170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)