Planaria EST Database


DrC_01744

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01744
         (851 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q96MC6|HIAT1_HUMAN  Hippocampus abundant transcript 1 pro...   114   4e-25
sp|P70187|HIAT1_MOUSE  Hippocampus abundant transcript 1 pro...   114   4e-25
sp|P51564|TCR8_PASMU  Tetracycline resistance protein, class...    36   0.12 
sp|P33733|TCR4_SALOR  Tetracycline resistance protein, class...    36   0.15 
sp|P02982|TCR1_ECOLI  Tetracycline resistance protein, class...    34   0.45 
sp|Q07282|TCR5_ECOLI  Tetracycline resistance protein, class...    34   0.59 
sp|P51563|TCR7_VIBAN  Tetracycline resistance protein, class...    34   0.59 
sp|P02981|TCR3_ECOLI  Tetracycline resistance protein, class...    33   1.3  
>sp|Q96MC6|HIAT1_HUMAN Hippocampus abundant transcript 1 protein (Putative tetracycline
           transporter-like protein)
          Length = 490

 Score =  114 bits (284), Expect = 4e-25
 Identities = 56/112 (50%), Positives = 76/112 (67%)
 Frame = +2

Query: 2   TYPAISAFLSKHADADQQGVAQGVLTGIRGLCNGLGPAVFGFTFYLFQVDLSGXXXXXXX 181
           T+PA+SA +S+ ADADQQGV QG++TGIRGLCNGLGPA++GF FY+F V+L         
Sbjct: 350 TFPAVSALVSRTADADQQGVVQGMITGIRGLCNGLGPALYGFIFYIFHVELK-ELPITGT 408

Query: 182 XXXXXLSNQYPFKSEKLLPGPPFAFGAILVLLAILVSTLIPNNPHAFVHISN 337
                 S Q+ F+   ++PGPPF FGA  VLLA+LV+  IP + +  +  S+
Sbjct: 409 DLGTNTSPQHHFEQNSIIPGPPFLFGACSVLLALLVALFIPEHTNLSLRSSS 460
>sp|P70187|HIAT1_MOUSE Hippocampus abundant transcript 1 protein
          Length = 490

 Score =  114 bits (284), Expect = 4e-25
 Identities = 56/112 (50%), Positives = 76/112 (67%)
 Frame = +2

Query: 2   TYPAISAFLSKHADADQQGVAQGVLTGIRGLCNGLGPAVFGFTFYLFQVDLSGXXXXXXX 181
           T+PA+SA +S+ ADADQQGV QG++TGIRGLCNGLGPA++GF FY+F V+L         
Sbjct: 350 TFPAVSALVSRTADADQQGVVQGMITGIRGLCNGLGPALYGFIFYIFHVELK-ELPITGT 408

Query: 182 XXXXXLSNQYPFKSEKLLPGPPFAFGAILVLLAILVSTLIPNNPHAFVHISN 337
                 S Q+ F+   ++PGPPF FGA  VLLA+LV+  IP + +  +  S+
Sbjct: 409 DLGTNTSPQHHFEQNSIIPGPPFLFGACSVLLALLVALFIPEHTNLSLRSSS 460
>sp|P51564|TCR8_PASMU Tetracycline resistance protein, class H (TETA(H))
          Length = 400

 Score = 36.2 bits (82), Expect = 0.12
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 8   PAISAFLSKHADADQQGVAQGVLTGIRGLCNGLGPAVFGFTF 133
           PA+  +LSK  D + QG  QG L  +  +   +GP +F F +
Sbjct: 317 PALQGYLSKSVDDNAQGKLQGTLVSLTNITGIIGPLLFAFIY 358
>sp|P33733|TCR4_SALOR Tetracycline resistance protein, class D (TETA(D))
          Length = 394

 Score = 35.8 bits (81), Expect = 0.15
 Identities = 19/51 (37%), Positives = 23/51 (45%)
 Frame = +2

Query: 8   PAISAFLSKHADADQQGVAQGVLTGIRGLCNGLGPAVFGFTFYLFQVDLSG 160
           PA+   +S  A A  QG  QGVL  +  L    GP +F F F   Q    G
Sbjct: 314 PALQGIISAGASAANQGKLQGVLVSLTNLTGVAGPLLFAFIFSQTQQSADG 364
>sp|P02982|TCR1_ECOLI Tetracycline resistance protein, class A (TETA(A))
          Length = 399

 Score = 34.3 bits (77), Expect = 0.45
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +2

Query: 8   PAISAFLSKHADADQQGVAQGVLTGIRGLCNGLGPAVF 121
           PA+ A LS+  D ++QG  QG L  +  L + +GP +F
Sbjct: 318 PALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLF 355
>sp|Q07282|TCR5_ECOLI Tetracycline resistance protein, class E (TETA(E))
          Length = 405

 Score = 33.9 bits (76), Expect = 0.59
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +2

Query: 2   TYPAISAFLSKHADADQQGVAQGVLTGIRGLCNGLGPAVFGFTF 133
           T PA+   +S       QG  QGVLT +  L   +GP VF F +
Sbjct: 315 TLPALQGIISVRVGQVAQGQLQGVLTSLTHLTAVIGPLVFAFLY 358
>sp|P51563|TCR7_VIBAN Tetracycline resistance protein, class G (TETA(G))
          Length = 393

 Score = 33.9 bits (76), Expect = 0.59
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +2

Query: 8   PAISAFLSKHADADQQGVAQGVLTGIRGLCNGLGPAVFGFT 130
           PA+ A LS +  +++QG  QG LT +  L +  GP   GFT
Sbjct: 316 PALQAMLSNNVSSNKQGALQGTLTSLTNLSSIAGP--LGFT 354
>sp|P02981|TCR3_ECOLI Tetracycline resistance protein, class C (TETA(C))
          Length = 396

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 8   PAISAFLSKHADADQQGVAQGVLTGIRGLCNGLGPAV 118
           PA+ A LS+  D D QG  QG L  +  L +  GP +
Sbjct: 318 PALQAMLSRQVDDDHQGQLQGSLAALTSLTSITGPLI 354
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,046,843
Number of Sequences: 369166
Number of extensions: 1571958
Number of successful extensions: 3979
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3970
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8390082510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)