Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_I12
(851 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q96MC6|HIAT1_HUMAN Hippocampus abundant transcript 1 pro... 114 4e-25
sp|P70187|HIAT1_MOUSE Hippocampus abundant transcript 1 pro... 114 4e-25
sp|P51564|TCR8_PASMU Tetracycline resistance protein, class... 36 0.12
sp|P33733|TCR4_SALOR Tetracycline resistance protein, class... 36 0.15
sp|P02982|TCR1_ECOLI Tetracycline resistance protein, class... 34 0.45
sp|Q07282|TCR5_ECOLI Tetracycline resistance protein, class... 34 0.59
sp|P51563|TCR7_VIBAN Tetracycline resistance protein, class... 34 0.59
sp|P02981|TCR3_ECOLI Tetracycline resistance protein, class... 33 1.3
>sp|Q96MC6|HIAT1_HUMAN Hippocampus abundant transcript 1 protein (Putative tetracycline
transporter-like protein)
Length = 490
Score = 114 bits (284), Expect = 4e-25
Identities = 56/112 (50%), Positives = 76/112 (67%)
Frame = +2
Query: 2 TYPAISAFLSKHADADQQGVAQGVLTGIRGLCNGLGPAVFGFTFYLFQVDLSGXXXXXXX 181
T+PA+SA +S+ ADADQQGV QG++TGIRGLCNGLGPA++GF FY+F V+L
Sbjct: 350 TFPAVSALVSRTADADQQGVVQGMITGIRGLCNGLGPALYGFIFYIFHVELK-ELPITGT 408
Query: 182 XXXXXLSNQYPFKSEKLLPGPPFAFGAILVLLAILVSTLIPNNPHAFVHISN 337
S Q+ F+ ++PGPPF FGA VLLA+LV+ IP + + + S+
Sbjct: 409 DLGTNTSPQHHFEQNSIIPGPPFLFGACSVLLALLVALFIPEHTNLSLRSSS 460
>sp|P70187|HIAT1_MOUSE Hippocampus abundant transcript 1 protein
Length = 490
Score = 114 bits (284), Expect = 4e-25
Identities = 56/112 (50%), Positives = 76/112 (67%)
Frame = +2
Query: 2 TYPAISAFLSKHADADQQGVAQGVLTGIRGLCNGLGPAVFGFTFYLFQVDLSGXXXXXXX 181
T+PA+SA +S+ ADADQQGV QG++TGIRGLCNGLGPA++GF FY+F V+L
Sbjct: 350 TFPAVSALVSRTADADQQGVVQGMITGIRGLCNGLGPALYGFIFYIFHVELK-ELPITGT 408
Query: 182 XXXXXLSNQYPFKSEKLLPGPPFAFGAILVLLAILVSTLIPNNPHAFVHISN 337
S Q+ F+ ++PGPPF FGA VLLA+LV+ IP + + + S+
Sbjct: 409 DLGTNTSPQHHFEQNSIIPGPPFLFGACSVLLALLVALFIPEHTNLSLRSSS 460
>sp|P51564|TCR8_PASMU Tetracycline resistance protein, class H (TETA(H))
Length = 400
Score = 36.2 bits (82), Expect = 0.12
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 8 PAISAFLSKHADADQQGVAQGVLTGIRGLCNGLGPAVFGFTF 133
PA+ +LSK D + QG QG L + + +GP +F F +
Sbjct: 317 PALQGYLSKSVDDNAQGKLQGTLVSLTNITGIIGPLLFAFIY 358
>sp|P33733|TCR4_SALOR Tetracycline resistance protein, class D (TETA(D))
Length = 394
Score = 35.8 bits (81), Expect = 0.15
Identities = 19/51 (37%), Positives = 23/51 (45%)
Frame = +2
Query: 8 PAISAFLSKHADADQQGVAQGVLTGIRGLCNGLGPAVFGFTFYLFQVDLSG 160
PA+ +S A A QG QGVL + L GP +F F F Q G
Sbjct: 314 PALQGIISAGASAANQGKLQGVLVSLTNLTGVAGPLLFAFIFSQTQQSADG 364
>sp|P02982|TCR1_ECOLI Tetracycline resistance protein, class A (TETA(A))
Length = 399
Score = 34.3 bits (77), Expect = 0.45
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +2
Query: 8 PAISAFLSKHADADQQGVAQGVLTGIRGLCNGLGPAVF 121
PA+ A LS+ D ++QG QG L + L + +GP +F
Sbjct: 318 PALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLF 355
>sp|Q07282|TCR5_ECOLI Tetracycline resistance protein, class E (TETA(E))
Length = 405
Score = 33.9 bits (76), Expect = 0.59
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +2
Query: 2 TYPAISAFLSKHADADQQGVAQGVLTGIRGLCNGLGPAVFGFTF 133
T PA+ +S QG QGVLT + L +GP VF F +
Sbjct: 315 TLPALQGIISVRVGQVAQGQLQGVLTSLTHLTAVIGPLVFAFLY 358
>sp|P51563|TCR7_VIBAN Tetracycline resistance protein, class G (TETA(G))
Length = 393
Score = 33.9 bits (76), Expect = 0.59
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +2
Query: 8 PAISAFLSKHADADQQGVAQGVLTGIRGLCNGLGPAVFGFT 130
PA+ A LS + +++QG QG LT + L + GP GFT
Sbjct: 316 PALQAMLSNNVSSNKQGALQGTLTSLTNLSSIAGP--LGFT 354
>sp|P02981|TCR3_ECOLI Tetracycline resistance protein, class C (TETA(C))
Length = 396
Score = 32.7 bits (73), Expect = 1.3
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 8 PAISAFLSKHADADQQGVAQGVLTGIRGLCNGLGPAV 118
PA+ A LS+ D D QG QG L + L + GP +
Sbjct: 318 PALQAMLSRQVDDDHQGQLQGSLAALTSLTSITGPLI 354
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,046,843
Number of Sequences: 369166
Number of extensions: 1571958
Number of successful extensions: 3979
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3970
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8390082510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)