Planaria EST Database


DrC_01739

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01739
         (407 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9BVV7|CR055_HUMAN  Protein C18orf55                            93   2e-19
sp|Q5U2X7|CR055_RAT  Protein C18orf55 homolog                      74   1e-13
sp|O94618|YBK9_SCHPO  Hypothetical protein C1289.09 in chrom...    45   7e-05
sp|Q04749|YMV8_YEAST  Hypothetical 47.1 kDa protein in NCA1-...    30   2.5  
sp|P51251|RPOC1_PORPU  DNA-directed RNA polymerase beta' cha...    30   2.5  
sp|Q9ZKB3|EDD_HELPJ  Phosphogluconate dehydratase (6-phospho...    29   4.2  
sp|P56111|EDD_HELPY  Phosphogluconate dehydratase (6-phospho...    29   4.2  
sp|Q9ZE55|Y092_RICPR  Hypothetical protein RP092                   28   5.5  
sp|Q9MUN6|CYF_MESVI  Apocytochrome f precursor                     28   7.2  
sp|P20512|YVAC_VACCC  Hypothetical 14.4 kDa protein                28   9.3  
>sp|Q9BVV7|CR055_HUMAN Protein C18orf55
          Length = 248

 Score = 92.8 bits (229), Expect = 2e-19
 Identities = 46/120 (38%), Positives = 75/120 (62%), Gaps = 3/120 (2%)
 Frame = +1

Query: 4   QELFSSESPEGIYDRTFKVCIQNDKISDIIGLNIKGFGETDRRGRRRHPAHTEWIDANKV 183
           +ELFSS SP  IY R  + C  + ++  + G ++KG+GE  RRGRR+H   TE++  + +
Sbjct: 130 KELFSSSSPSKIYGRALEKCRSHPEVIGVFGESVKGYGEVTRRGRRQHVRFTEYV-KDGL 188

Query: 184 RHIAMKFYLKGNL--GQATVFLEMKKDE-KNKYQYEYVMVETNSYPHRKIFLIDNRASVD 354
           +H  +KFY++G+    Q TV+ ++K++    +Y + Y+ VE  SYP R I + DNR+  D
Sbjct: 189 KHTCVKFYIEGSEPGKQGTVYAQVKENPGSGEYDFRYIFVEIESYPRRTIIIEDNRSQDD 248
>sp|Q5U2X7|CR055_RAT Protein C18orf55 homolog
          Length = 245

 Score = 73.6 bits (179), Expect = 1e-13
 Identities = 41/116 (35%), Positives = 71/116 (61%), Gaps = 3/116 (2%)
 Frame = +1

Query: 4   QELFSSESPEGIYDRTFKVCIQNDKISDIIGLNIKGFGETDRRGRRRHPAHTEWIDANKV 183
           +ELFSS SP  IY +    C  + ++  + G  +KG+GE  RRGRR+H + TE+ + N +
Sbjct: 129 KELFSSSSPNIIYGKALGKCRTHPEVISVFGEPVKGYGEMSRRGRRQHVSFTEYAN-NGL 187

Query: 184 RHIAMKFYLKGNL--GQATVFLEMKKDEKN-KYQYEYVMVETNSYPHRKIFLIDNR 342
           + I +KFY++G+    Q TV  E++++ ++ ++ + Y+ V+    P R I + DNR
Sbjct: 188 KRIRVKFYIEGSEPGKQGTVHAEVEENPRSGQFDFRYIFVDV--APKRSIVVEDNR 241
>sp|O94618|YBK9_SCHPO Hypothetical protein C1289.09 in chromosome II
          Length = 223

 Score = 44.7 bits (104), Expect = 7e-05
 Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
 Frame = +1

Query: 43  DRTFKVCIQNDKISDIIGLNIKGFGETDRRGRRRHPAHTEWI-DANKVRHIAMKFYLKGN 219
           D  F++   N++   + G ++K  GE     RR H   T  + D + V H+ ++F+L GN
Sbjct: 103 DEAFELLKANEECRYVFGDHMKALGEATHPLRRTHGILTSRVWDHHGVEHLVLQFHLIGN 162

Query: 220 LGQATVFLEMKKDEKNKYQYEYVMVETNSYPHRKIFLIDNRASV 351
             +  VF  +  + +  Y++EY+ V+  +Y   KI + D+  SV
Sbjct: 163 ERKGHVFGRL-VNVQGDYKWEYLFVDVANY--GKIIIFDHTNSV 203
>sp|Q04749|YMV8_YEAST Hypothetical 47.1 kDa protein in NCA1-HMS1 intergenic region
          Length = 426

 Score = 29.6 bits (65), Expect = 2.5
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = +1

Query: 214 GNLGQATVFLEMKKDEKNKYQYEYVMVETNSYPHRKIFLID 336
           GN G AT+ + ++KD  ++ + +Y +   N  P R++ L++
Sbjct: 370 GNGGDATIGMGLRKDPDDENENKYKIKVNNGEPRRRVSLLN 410
>sp|P51251|RPOC1_PORPU DNA-directed RNA polymerase beta' chain (PEP) (Plastid-encoded RNA
           polymerase beta' subunit) (RNA polymerase beta' subunit)
          Length = 629

 Score = 29.6 bits (65), Expect = 2.5
 Identities = 22/66 (33%), Positives = 32/66 (48%)
 Frame = +1

Query: 109 GFGETDRRGRRRHPAHTEWIDANKVRHIAMKFYLKGNLGQATVFLEMKKDEKNKYQYEYV 288
           G   T+ R RR   A+ E   A+ V H+   +YLKG+     + L++K  E  K  Y + 
Sbjct: 89  GVEVTESRVRRHRMAYIEL--ASPVTHV---WYLKGSTSYIALALDLKVKEVEKIVYFHS 143

Query: 289 MVETNS 306
            V T S
Sbjct: 144 YVVTQS 149
>sp|Q9ZKB3|EDD_HELPJ Phosphogluconate dehydratase (6-phosphogluconate dehydratase)
          Length = 608

 Score = 28.9 bits (63), Expect = 4.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 208 LKGNLGQATVFLEMKKDEKNKYQYEYVMVETNS 306
           LKGNLG+A + +   KDE  K +   ++ +T S
Sbjct: 422 LKGNLGRAVIKISAIKDEHRKVKARAIVFKTQS 454
>sp|P56111|EDD_HELPY Phosphogluconate dehydratase (6-phosphogluconate dehydratase)
          Length = 608

 Score = 28.9 bits (63), Expect = 4.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 208 LKGNLGQATVFLEMKKDEKNKYQYEYVMVETNS 306
           LKGNLG+A + +   KDE  K +   ++ +T S
Sbjct: 422 LKGNLGRAVIKISAIKDEHRKVKARAIVFKTQS 454
>sp|Q9ZE55|Y092_RICPR Hypothetical protein RP092
          Length = 334

 Score = 28.5 bits (62), Expect = 5.5
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 169 DANKVRHIAMKFYLKGNLGQATVFLEMKKDEKNK 270
           D+     + + +YLK N  QATV+LE K +EK K
Sbjct: 79  DSKVYYQLGLIYYLKNNYRQATVYLE-KSNEKYK 111
>sp|Q9MUN6|CYF_MESVI Apocytochrome f precursor
          Length = 313

 Score = 28.1 bits (61), Expect = 7.2
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +1

Query: 100 NIKGFGETDRRGRRRHPAHTEWIDANKVRHIAMKFYLKGNLGQATVFLEMKKDEKNKYQ 276
           N+ GFG+ D     ++P   +W+ A         F +   LGQ  VFL +KK +  + Q
Sbjct: 260 NVGGFGQMDTEVVLQNPVRIKWLIA---------FLILSTLGQ--VFLVLKKKQFERVQ 307
>sp|P20512|YVAC_VACCC Hypothetical 14.4 kDa protein
          Length = 128

 Score = 27.7 bits (60), Expect = 9.3
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +2

Query: 11  YFLLRAQKVFMIERSKFVFKMIKSPILLVSISKGLVRQIGVVEEDILLI 157
           +FL +   +F+ E SK +   +   + LVSIS  ++  IGV +  + +I
Sbjct: 27  WFLAKMIDIFLSEDSKILLVAVSIKMKLVSISNFILELIGVAKCTLYVI 75
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,689,993
Number of Sequences: 369166
Number of extensions: 917804
Number of successful extensions: 2191
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2189
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1859285150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)