Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_H17
(407 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9BVV7|CR055_HUMAN Protein C18orf55 93 2e-19
sp|Q5U2X7|CR055_RAT Protein C18orf55 homolog 74 1e-13
sp|O94618|YBK9_SCHPO Hypothetical protein C1289.09 in chrom... 45 7e-05
sp|Q04749|YMV8_YEAST Hypothetical 47.1 kDa protein in NCA1-... 30 2.5
sp|P51251|RPOC1_PORPU DNA-directed RNA polymerase beta' cha... 30 2.5
sp|Q9ZKB3|EDD_HELPJ Phosphogluconate dehydratase (6-phospho... 29 4.2
sp|P56111|EDD_HELPY Phosphogluconate dehydratase (6-phospho... 29 4.2
sp|Q9ZE55|Y092_RICPR Hypothetical protein RP092 28 5.5
sp|Q9MUN6|CYF_MESVI Apocytochrome f precursor 28 7.2
sp|P20512|YVAC_VACCC Hypothetical 14.4 kDa protein 28 9.3
>sp|Q9BVV7|CR055_HUMAN Protein C18orf55
Length = 248
Score = 92.8 bits (229), Expect = 2e-19
Identities = 46/120 (38%), Positives = 75/120 (62%), Gaps = 3/120 (2%)
Frame = +1
Query: 4 QELFSSESPEGIYDRTFKVCIQNDKISDIIGLNIKGFGETDRRGRRRHPAHTEWIDANKV 183
+ELFSS SP IY R + C + ++ + G ++KG+GE RRGRR+H TE++ + +
Sbjct: 130 KELFSSSSPSKIYGRALEKCRSHPEVIGVFGESVKGYGEVTRRGRRQHVRFTEYV-KDGL 188
Query: 184 RHIAMKFYLKGNL--GQATVFLEMKKDE-KNKYQYEYVMVETNSYPHRKIFLIDNRASVD 354
+H +KFY++G+ Q TV+ ++K++ +Y + Y+ VE SYP R I + DNR+ D
Sbjct: 189 KHTCVKFYIEGSEPGKQGTVYAQVKENPGSGEYDFRYIFVEIESYPRRTIIIEDNRSQDD 248
>sp|Q5U2X7|CR055_RAT Protein C18orf55 homolog
Length = 245
Score = 73.6 bits (179), Expect = 1e-13
Identities = 41/116 (35%), Positives = 71/116 (61%), Gaps = 3/116 (2%)
Frame = +1
Query: 4 QELFSSESPEGIYDRTFKVCIQNDKISDIIGLNIKGFGETDRRGRRRHPAHTEWIDANKV 183
+ELFSS SP IY + C + ++ + G +KG+GE RRGRR+H + TE+ + N +
Sbjct: 129 KELFSSSSPNIIYGKALGKCRTHPEVISVFGEPVKGYGEMSRRGRRQHVSFTEYAN-NGL 187
Query: 184 RHIAMKFYLKGNL--GQATVFLEMKKDEKN-KYQYEYVMVETNSYPHRKIFLIDNR 342
+ I +KFY++G+ Q TV E++++ ++ ++ + Y+ V+ P R I + DNR
Sbjct: 188 KRIRVKFYIEGSEPGKQGTVHAEVEENPRSGQFDFRYIFVDV--APKRSIVVEDNR 241
>sp|O94618|YBK9_SCHPO Hypothetical protein C1289.09 in chromosome II
Length = 223
Score = 44.7 bits (104), Expect = 7e-05
Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Frame = +1
Query: 43 DRTFKVCIQNDKISDIIGLNIKGFGETDRRGRRRHPAHTEWI-DANKVRHIAMKFYLKGN 219
D F++ N++ + G ++K GE RR H T + D + V H+ ++F+L GN
Sbjct: 103 DEAFELLKANEECRYVFGDHMKALGEATHPLRRTHGILTSRVWDHHGVEHLVLQFHLIGN 162
Query: 220 LGQATVFLEMKKDEKNKYQYEYVMVETNSYPHRKIFLIDNRASV 351
+ VF + + + Y++EY+ V+ +Y KI + D+ SV
Sbjct: 163 ERKGHVFGRL-VNVQGDYKWEYLFVDVANY--GKIIIFDHTNSV 203
>sp|Q04749|YMV8_YEAST Hypothetical 47.1 kDa protein in NCA1-HMS1 intergenic region
Length = 426
Score = 29.6 bits (65), Expect = 2.5
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +1
Query: 214 GNLGQATVFLEMKKDEKNKYQYEYVMVETNSYPHRKIFLID 336
GN G AT+ + ++KD ++ + +Y + N P R++ L++
Sbjct: 370 GNGGDATIGMGLRKDPDDENENKYKIKVNNGEPRRRVSLLN 410
>sp|P51251|RPOC1_PORPU DNA-directed RNA polymerase beta' chain (PEP) (Plastid-encoded RNA
polymerase beta' subunit) (RNA polymerase beta' subunit)
Length = 629
Score = 29.6 bits (65), Expect = 2.5
Identities = 22/66 (33%), Positives = 32/66 (48%)
Frame = +1
Query: 109 GFGETDRRGRRRHPAHTEWIDANKVRHIAMKFYLKGNLGQATVFLEMKKDEKNKYQYEYV 288
G T+ R RR A+ E A+ V H+ +YLKG+ + L++K E K Y +
Sbjct: 89 GVEVTESRVRRHRMAYIEL--ASPVTHV---WYLKGSTSYIALALDLKVKEVEKIVYFHS 143
Query: 289 MVETNS 306
V T S
Sbjct: 144 YVVTQS 149
>sp|Q9ZKB3|EDD_HELPJ Phosphogluconate dehydratase (6-phosphogluconate dehydratase)
Length = 608
Score = 28.9 bits (63), Expect = 4.2
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 208 LKGNLGQATVFLEMKKDEKNKYQYEYVMVETNS 306
LKGNLG+A + + KDE K + ++ +T S
Sbjct: 422 LKGNLGRAVIKISAIKDEHRKVKARAIVFKTQS 454
>sp|P56111|EDD_HELPY Phosphogluconate dehydratase (6-phosphogluconate dehydratase)
Length = 608
Score = 28.9 bits (63), Expect = 4.2
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 208 LKGNLGQATVFLEMKKDEKNKYQYEYVMVETNS 306
LKGNLG+A + + KDE K + ++ +T S
Sbjct: 422 LKGNLGRAVIKISAIKDEHRKVKARAIVFKTQS 454
>sp|Q9ZE55|Y092_RICPR Hypothetical protein RP092
Length = 334
Score = 28.5 bits (62), Expect = 5.5
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 169 DANKVRHIAMKFYLKGNLGQATVFLEMKKDEKNK 270
D+ + + +YLK N QATV+LE K +EK K
Sbjct: 79 DSKVYYQLGLIYYLKNNYRQATVYLE-KSNEKYK 111
>sp|Q9MUN6|CYF_MESVI Apocytochrome f precursor
Length = 313
Score = 28.1 bits (61), Expect = 7.2
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +1
Query: 100 NIKGFGETDRRGRRRHPAHTEWIDANKVRHIAMKFYLKGNLGQATVFLEMKKDEKNKYQ 276
N+ GFG+ D ++P +W+ A F + LGQ VFL +KK + + Q
Sbjct: 260 NVGGFGQMDTEVVLQNPVRIKWLIA---------FLILSTLGQ--VFLVLKKKQFERVQ 307
>sp|P20512|YVAC_VACCC Hypothetical 14.4 kDa protein
Length = 128
Score = 27.7 bits (60), Expect = 9.3
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +2
Query: 11 YFLLRAQKVFMIERSKFVFKMIKSPILLVSISKGLVRQIGVVEEDILLI 157
+FL + +F+ E SK + + + LVSIS ++ IGV + + +I
Sbjct: 27 WFLAKMIDIFLSEDSKILLVAVSIKMKLVSISNFILELIGVAKCTLYVI 75
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,689,993
Number of Sequences: 369166
Number of extensions: 917804
Number of successful extensions: 2191
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2189
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1859285150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)